View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9604_low_23 (Length: 341)
Name: NF9604_low_23
Description: NF9604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9604_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 19 - 326
Target Start/End: Original strand, 2490337 - 2490644
Alignment:
| Q |
19 |
aacaacaatcagaataccctgaaattcaatagtattttaagcacgtttaatcactatatcgttcatctttgattaccaggattatggttgggctaccgtc |
118 |
Q |
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| T |
2490337 |
aacaacaatcagaataccctgaaattccatagtattttaagcacgtttaatcactatatcgttcatctttgattaccaggattatggttgggctaccgtc |
2490436 |
T |
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| Q |
119 |
tgcagagaacagagaaaatatattgaggacccttttggctaaagagaaggtgcacgggggacttgattttaaggaactcgcaactatgactgaaggatat |
218 |
Q |
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| T |
2490437 |
cgcagagaacagagaaaatatattgaggacccttttggctaaagagaaggtgcacgggggacttgattttaaggaactcgcaactatgactgaaggatat |
2490536 |
T |
|
| Q |
219 |
agtggaagtgatctgaaggtttttctctattattgttttcctatggccgtaacttaactatcgtgttacaatctacaaatgcttttcttatgtttagttt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2490537 |
agtggaagtgatctgaaggtttttctctattattgttttcctatggccgtaacttaactatcgtgttacaatctacaaatgcttttcttatgtttagttt |
2490636 |
T |
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| Q |
319 |
ctgatgtc |
326 |
Q |
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|||||||| |
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| T |
2490637 |
ctgatgtc |
2490644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 45989453 - 45989493
Alignment:
| Q |
199 |
caactatgactgaaggatatagtggaagtgatctgaaggtt |
239 |
Q |
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| T |
45989453 |
caactatgacagaaggatatagtggaagtgatcttaaggtt |
45989493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 44936073 - 44936113
Alignment:
| Q |
199 |
caactatgactgaaggatatagtggaagtgatctgaaggtt |
239 |
Q |
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| T |
44936073 |
caactatgacagaaggatatagcggaagtgatcttaaggtt |
44936113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 240
Target Start/End: Complemental strand, 41589925 - 41589784
Alignment:
| Q |
99 |
attatggttgggctaccgtctgcagagaacagagaaaatatattgaggacccttttggctaaagagaaggtgcacgggggacttgattttaaggaactcg |
198 |
Q |
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|||||||| || ||||| |||| |||||||| ||||| || || ||||| |||||| | ||||| |||||| || | | |||||||||||||||| | |
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| T |
41589925 |
attatggtaggactaccatctgttgagaacagggaaaagattttaaggactcttttgtcaaaagaaaaggtggacaaagaaattgattttaaggaacttg |
41589826 |
T |
|
| Q |
199 |
caactatgactgaaggatatagtggaagtgatctgaaggttt |
240 |
Q |
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| T |
41589825 |
cgaccatgacagacggatataccggaagtgatttaaaggttt |
41589784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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