View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9604_low_25 (Length: 312)
Name: NF9604_low_25
Description: NF9604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9604_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 6 - 295
Target Start/End: Complemental strand, 17134433 - 17134142
Alignment:
| Q |
6 |
aaaaactcgctcgttgttgagtttttatgtgagtagaaggaaggagaggtgttgcacttataggtgaggagtcaa-gatcggttacaaaattgatggctg |
104 |
Q |
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| T |
17134433 |
aaaaacttgctcgttgttgagtttttatgtgagtagaaggaaggagagctgttgcacttatagttgaggagttaaagatcgattacaaaattgatggttg |
17134334 |
T |
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| Q |
105 |
agaacatttgggcattacaaaaccaacttagtgatctcccctcatt-aagatcaaaatggacaagagacatatgattgtgaaaactttatttttcaaatt |
203 |
Q |
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||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
17134333 |
agaacatttggccattacaaaaccaacttagtgatcttccctcatttaagatcaaaatggataagagacatatgattgtgaaaactttatttttcaaatt |
17134234 |
T |
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| Q |
204 |
tgcaacaaatatagacaactatttattgaaggtgggagtaactctctaacaatgtacatgatccattattacaactttagtagagagtaact |
295 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17134233 |
tgcaataaatatagacaactatttattgaaggtgggagtaactctctaacaatgtacatgatccattattacaactttagtagagagtaact |
17134142 |
T |
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