View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9604_low_26 (Length: 289)
Name: NF9604_low_26
Description: NF9604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9604_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 11 - 273
Target Start/End: Original strand, 39724237 - 39724508
Alignment:
| Q |
11 |
agcacagaaataattcattagaggtatatatgacaacataataaaatgaacaactacaggtataaaaacaaggacaaacaaatcagacattttttcctta |
110 |
Q |
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| T |
39724237 |
agcacataaataattcattagaggtatatatgacaacataataaaatgaacaactacaggtataaaaacaaggacaaacaaatcagacattttttcctta |
39724336 |
T |
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| Q |
111 |
attatttgtttccttcaatattacatttttcacaatnnnnnnnnnnnnnnntgacatcatttcaactacataaccctctcgatcgatttccaacttgt-- |
208 |
Q |
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| T |
39724337 |
attatttgtttccttcaatattacatttttcacaat-----aaaaaaaaaatgacatcatttcaactacataaccctctcgatcgatttccaacttgttg |
39724431 |
T |
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| Q |
209 |
------------tgatatctagacaacttgagtgacaccacttgaagccatgccatgttgtgtagtatcatctttgt |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39724432 |
aattttctcatatgatatctagacaacttgagtgacaccacttgaagccatgccatgttgtgtagtatcatctttgt |
39724508 |
T |
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