View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9604_low_28 (Length: 286)
Name: NF9604_low_28
Description: NF9604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9604_low_28 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 10536 - 10277
Alignment:
| Q |
18 |
ctaagcacaccatttgcaaatctttcaggattgaactcgtgtgcatcggccccccaaatatcaatttcatgctgcaatattgggattggaatctgaatat |
117 |
Q |
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| T |
10536 |
ctaagcacaccatttgcaaatctttcaggattgaactcgtgtgcatcggccccccaaatatcaatgtcatgctgcaatattgggattggaatctgaatat |
10437 |
T |
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| Q |
118 |
tcattccttttggaactttgataccttttatgttaatatcttggaaagctgctctggtgagaaatactgctggcggataaagcctcaaagtctcttgaat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10436 |
tcattccttttggaactttgataccttttatgttaatatcttggaaagctgttctggtgagaaatactgctggcggataaagcctcaaagtctcttgaat |
10337 |
T |
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| Q |
218 |
caccatggttaactgcaaacgcaacaattttatagaagatttact--atgcataagaata |
275 |
Q |
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| T |
10336 |
caccatggttaactgcaaacgcaacaattttatagaagatttacttaatgcataagaata |
10277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 149; Significance: 9e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 19208274 - 19208058
Alignment:
| Q |
20 |
aagcacaccatttgcaaatctttcaggattgaactcgtgtgcatcggccccccaaatatcaatttcatgctgcaatattgggattggaatctgaatattc |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| || || |||||||| | ||||||||||| ||||| |
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| T |
19208274 |
aagcacaccatttgcaaatctttcaggattgaactcgtgtgcatcgggcccccagatatcaatgtcttgttgcaatatcgcaattggaatctgcatatta |
19208175 |
T |
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| Q |
120 |
attccttttggaactttgataccttttatgttaatatcttggaaagctgctctggtgagaaatactgctggcggataaagcctcaaagtctcttgaatca |
219 |
Q |
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| T |
19208174 |
attccttttggaactttgataccttttaaattaatatcttggaatgatgttctggtgataaatactgctggtggataaagcctcaaagtctcttgaatca |
19208075 |
T |
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| Q |
220 |
ccatggttaactgcaaa |
236 |
Q |
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||||||||||||||||| |
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| T |
19208074 |
ccatggttaactgcaaa |
19208058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 25197741 - 25197525
Alignment:
| Q |
20 |
aagcacaccatttgcaaatctttcaggattgaactcgtgtgcatcggccccccaaatatcaatttcatgctgcaatattgggattggaatctgaatattc |
119 |
Q |
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|||||||||||||| |||||||||||| ||||| |||||||||||| ||||||| ||||| | || | ||| ||||| |||||||||||||||||| | |
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| T |
25197741 |
aagcacaccatttgaaaatctttcaggtttgaattcgtgtgcatcgaccccccatatatccttgtcttcctgaaatatcgggattggaatctgaatagtg |
25197642 |
T |
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| Q |
120 |
attccttttggaactttgataccttttatgttaatatcttggaaagctgctctggtgagaaatactgctggcggataaagcctcaaagtctcttgaatca |
219 |
Q |
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||||||||||||| |||||||||||||| | | ||||| || | || ||| | | ||| | | | || | ||||||||| |||||||||||||||| |
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| T |
25197641 |
attccttttggaattttgataccttttaaatcataatcttttaatgttgttcttgcggcaaacaatacaggtgaataaagccttaaagtctcttgaatca |
25197542 |
T |
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| Q |
220 |
ccatggttaactgcaaa |
236 |
Q |
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|||| |||||||||||| |
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| T |
25197541 |
ccattgttaactgcaaa |
25197525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 234
Target Start/End: Complemental strand, 1763275 - 1763063
Alignment:
| Q |
22 |
gcacaccatttgcaaatctttcaggattgaactcgtgtgcatcggccccccaaatatcaatttcatgctgcaatattgggattggaatctgaatattcat |
121 |
Q |
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|||| ||||||||||||||||| |||||||||| |||||||| ||||||| || || || ||||||||||| |||||||| |||| |||||| |
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| T |
1763275 |
gcactccatttgcaaatctttccggattgaacttatgtgcatcatgtccccaaagctctgggtcttgatgcaatattggcattggaatttgaagattcat |
1763176 |
T |
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| Q |
122 |
tccttttggaactttgataccttttatgttaatatcttggaaagctgctctggtgagaaatactgctggcggataaagcctcaaagtctcttgaatcacc |
221 |
Q |
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||||||||||| || ||||||||| | ||||| |||| ||||| ||| | ||| |||||| |||||||||||||| ||||||||||||||| |
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| T |
1763175 |
tccttttggaatttggatacctttgaaattaatgtcttcaaaagcctgtctaacaaccgataatgctggtggataaagcctcaatgtctcttgaatcacc |
1763076 |
T |
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| Q |
222 |
atggttaactgca |
234 |
Q |
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|| |||||||||| |
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| T |
1763075 |
attgttaactgca |
1763063 |
T |
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