View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9604_low_4 (Length: 643)
Name: NF9604_low_4
Description: NF9604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9604_low_4 |
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| [»] scaffold0596 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 14 - 373
Target Start/End: Complemental strand, 27623721 - 27623362
Alignment:
| Q |
14 |
tggacatcaaagggagcattttctgatttgcatttggttggttcatggagtggtccatcgacaaaatcgaatgatattgtcactgatgattatttaaatc |
113 |
Q |
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| T |
27623721 |
tggacaacaaagggagcattttctgatttgcgtttgattggttcatggagtggtccagcgacaaaatcgaatgatattgtcactgatgataatttaaatc |
27623622 |
T |
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| Q |
114 |
ccaatgtcgcccacgacatggagattttgagtcagtaagtttggaggggaaacgatgctataaacattgggcccctaacgggtttatactgatgaggaag |
213 |
Q |
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| T |
27623621 |
ccaatgtcgcccacgacatggagattttgagtccgtaagtttggaggggaaaagatgttataaacactgggcccccaacgggtttatactgatgaggaag |
27623522 |
T |
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| Q |
214 |
agagagcgattgctatcagctatatgaggaatcgttttgcggcttcagaggggcccttcattaaagtggtttcaaaggcaacaaaaagaatttaaagaag |
313 |
Q |
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| T |
27623521 |
agagagcgattgctatcagctatctgaggaatcgttctgcggctacagaggggcccttcattaaagtggtttcaaaggcaacgaaaagaatttgaagaag |
27623422 |
T |
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| Q |
314 |
agtttttatgttcataatacccaatctagagctatgttgcctgattaacccgaagactct |
373 |
Q |
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| T |
27623421 |
agtttttatgttcataatacccgatctagggctatgttgactgattaactcgaagactct |
27623362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 72 - 319
Target Start/End: Complemental strand, 14097519 - 14097276
Alignment:
| Q |
72 |
cgacaaaatcgaatgatattgtcactgatgattatttaaatcccaatgtcgcccacgacatggagattttgagtcagtaagtttggaggggaaacgatgc |
171 |
Q |
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| T |
14097519 |
cgacaaaatcgaatgaaattgtcactaatgacaatttaaatcccagcgtcgctcacgacttggagattttgaggcaatatgtttggaagggaaacgaagc |
14097420 |
T |
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| Q |
172 |
tataaacattgggcccctaacgggtttatactgatgaggaagagagagcgattgctatcagctatatgaggaatcgttttgcggcttcagaggggccctt |
271 |
Q |
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| T |
14097419 |
tacatacattgg--ccct--cgggtgtataccgatgaggaagagagagcggctgctatcaattatccgaggaatcgtgctgctactacagaggagccctt |
14097324 |
T |
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| Q |
272 |
cattaaagtggtttcaaaggcaacaaaaagaatttaaagaagagtttt |
319 |
Q |
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| T |
14097323 |
cactgaagtggtttcaaagaccgggaaaagaatttgaagaagggtttt |
14097276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 577 - 628
Target Start/End: Complemental strand, 27602455 - 27602404
Alignment:
| Q |
577 |
ttagtctggacattgtgcatgatctaaatcgtccaagagatagggtgatgat |
628 |
Q |
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| T |
27602455 |
ttagtctggacattgtgcatgatctaaatcgtccaagagatagggggatgat |
27602404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 507 - 541
Target Start/End: Complemental strand, 27602494 - 27602460
Alignment:
| Q |
507 |
ctacccttttgcttaaataaaagatgcattgtgaa |
541 |
Q |
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| T |
27602494 |
ctacccttttgcttaaataaaagatgcattgtgaa |
27602460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 67 - 285
Target Start/End: Complemental strand, 2305 - 2091
Alignment:
| Q |
67 |
tccatcgacaaaatcgaatgatattgtcactgatgattatttaaatcccaatgtcgcccacgacatggagattttgagtcagtaagtttggaggggaaac |
166 |
Q |
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| T |
2305 |
tccattgacaaaattgaatgaaattgtcactgatgacaatttaaattccaacgtcgctcacaaatcggagattttgagacaatatatttggaagggaaac |
2206 |
T |
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| Q |
167 |
gatgctataaacattgggcccctaacgggtttatactgatgaggaagagagagcgattgctatcagctatatgaggaatcgttttgcggcttcagagggg |
266 |
Q |
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| T |
2205 |
gaagctacatacactgggcc----tcgggtgtatactgatgaggaagagagagcggctgctatcaattatatgaggaatcgtgctgctattgcagaggag |
2110 |
T |
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| Q |
267 |
cccttcattaaagtggttt |
285 |
Q |
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| T |
2109 |
cccttcactgaagtggttt |
2091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 36 - 143
Target Start/End: Complemental strand, 23279466 - 23279362
Alignment:
| Q |
36 |
ctgatttgcatttggttggttcatggagtggtccatcgacaaaatcgaatgatattgtcactgatgattatttaaatcccaatgtcgcccacgacatgga |
135 |
Q |
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| T |
23279466 |
ctgatatgcgtttggttggttcatggaatgatgcattgaaaaaatcgaatgttgttg---ctgatgataatttaaatcctattgtcgctcatgacatgga |
23279370 |
T |
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| Q |
136 |
gattttga |
143 |
Q |
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| T |
23279369 |
gattttga |
23279362 |
T |
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