View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9604_low_44 (Length: 223)
Name: NF9604_low_44
Description: NF9604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9604_low_44 |
 | |
|
| [»] scaffold0176 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 34155161 - 34155353
Alignment:
| Q |
19 |
acatgattgtccttgacaaagaacatctaaacgttaagcaaccttattacgctcaaaacaagaggaacgatccgttgatacgataatcgatgatgaatta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
34155161 |
acatgattgtccttgacaaagaacatctgaacgtaaagcaaccttattacactcaaaacaagatgaacgatcagttgatacgataatcgatgatgaatta |
34155260 |
T |
|
| Q |
119 |
tctccaataattgtccatggattgatatttgatgaaacattggaacctcctgcttcaaaacctgaaacattaatttagaataataagaataat |
211 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
34155261 |
tctccaataattatccatggattgatatttgatgaaacattggaaccccctgcttcaaaacctgaaacattaatttagaataataaaaataat |
34155353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 34168744 - 34168552
Alignment:
| Q |
19 |
acatgattgtccttgacaaagaacatctaaacgttaagcaaccttattacgctcaaaacaagaggaacgatccgttgatacgataatcgatgatgaatta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
34168744 |
acatgattgtccttgacaaagaacatctgaacgtaaagcaaccttattacactcaaaacaagatgaacgatcagttgatacgataatcgatgatgaatta |
34168645 |
T |
|
| Q |
119 |
tctccaataattgtccatggattgatatttgatgaaacattggaacctcctgcttcaaaacctgaaacattaatttagaataataagaataat |
211 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
34168644 |
tctccaataattatccatggattgatatttgatgaaacattggaaccccctgcttcaaaacctgaaacattaatttagaataataaaaataat |
34168552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 34208954 - 34208762
Alignment:
| Q |
19 |
acatgattgtccttgacaaagaacatctaaacgttaagcaaccttattacgctcaaaacaagaggaacgatccgttgatacgataatcgatgatgaatta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
34208954 |
acatgattgtccttgacaaagaacatctaaacgtaaagcaaccttattacgctcaaaacaagaggaacgatcagttgatacgataatcgatgatgaatta |
34208855 |
T |
|
| Q |
119 |
tctccaataattgtccatggattgatatttgatgaaacattggaacctcctgcttcaaaacctgaaacattaatttagaataataagaataat |
211 |
Q |
| |
|
||| ||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
34208854 |
tcttcaataatagtccatagattaatatttgatgaaacattggaacctcctgcttcaaaacctcaaacattaatttagaataataaaaataat |
34208762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 29066 - 28874
Alignment:
| Q |
19 |
acatgattgtccttgacaaagaacatctaaacgttaagcaaccttattacgctcaaaacaagaggaacgatccgttgatacgataatcgatgatgaatta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
29066 |
acatgattgtccttgacaaagaacatctnaacgtaaagcaaccttattacnctcaaaacaagatgaacgatcagttgatacgataatcgatgatgaatta |
28967 |
T |
|
| Q |
119 |
tctccaataattgtccatggattgatatttgatgaaacattggaacctcctgcttcaaaacctgaaacattaatttagaataataagaataat |
211 |
Q |
| |
|
||| |||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28966 |
tctncaataattatccatggattgatatttgatgaaacattggaaccccctncttcaaaacctgaaacattaatttagaataataaaaataat |
28874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University