View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9604_low_5 (Length: 634)
Name: NF9604_low_5
Description: NF9604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9604_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 579; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 10 - 616
Target Start/End: Complemental strand, 31505957 - 31505351
Alignment:
| Q |
10 |
aggagcacagacatctgcaatgttaccatctgattttaccaagaatcacgtgtattaattcaaccggcaaagggaaaatcaaatgaaaattggtttttct |
109 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
31505957 |
aggaacacagacatctgcaatgttaccatctgattttaccaagaatcacgtgtatcaattcaaccgacaaagggaaaatcaaatgaaaattggtttttct |
31505858 |
T |
|
| Q |
110 |
agaaggatgtaaccagcatagttgccttttgcataacagactacaatagaatagtttaaagcatcaattaacactagatagcaagggaatgttctcaccg |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||| |
|
|
| T |
31505857 |
agaaggatgtaaccagcatagttgccttttgcataacagactacaatagaatagtttaaagcatcaattaacactaggtaacaaggaaatgttctcaccg |
31505758 |
T |
|
| Q |
210 |
ttgagctgatgtgcatcacatgggaatatcgttcaacattcataagcttctcaaccttaacagaaccactttttgcaacctacaaacagaacttttgtta |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31505757 |
ttgagctgatgtgcatcacatgggaatatcgttcaacattcataagcttctcaaccttaacagaaccactttttgcaacctacaaacagaacttttgtta |
31505658 |
T |
|
| Q |
310 |
gcttaaccatagcagattgaagtacataatacaaactatcttgtaaaaaagtcagaataaaatcattgaatcagctttgtctgcataaagagatatttga |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31505657 |
gcttaaccatagcagattgaagtacataatacaaactatcttgtaaaaaagtcagaataaaatcattgaatcagctttgtctgcataaagagatatttga |
31505558 |
T |
|
| Q |
410 |
ggttataaatattattgtcatagttgttacaaacaaaggaataaaactttccgactgtaaatccatgatacagcagttaacaataactttgaagaaccat |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31505557 |
ggttataaatattattgtcatagttgttacaaacaaaggaataaaactttccgactgtaaatccatgatacagcagttaacaataactttgaagaaccat |
31505458 |
T |
|
| Q |
510 |
atccgtacatatgtacctacttttcctaacacaaccaaatagtccagtggcaaattggcttttaaggaacaactgaacatgttgatatggattgacaacc |
609 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31505457 |
atccgtacatatgtacctacttttcctaacacaaccaaatagtccagtggcaaattggcctttaaggaacaactgaacatgttgatatggattgacaacc |
31505358 |
T |
|
| Q |
610 |
acaatta |
616 |
Q |
| |
|
||||||| |
|
|
| T |
31505357 |
acaatta |
31505351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 10 - 352
Target Start/End: Original strand, 27608293 - 27608642
Alignment:
| Q |
10 |
aggagcacagacatctgcaatgttaccatctgattttacc-aagaatcacgtgtattaattcaaccggcaaagggaaaatcaaatgaaaattggtttttc |
108 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27608293 |
aggaacacagacatctgcaatgttaccatctgatttttttgaagaattacatgtattaattcaaccggcaaagggaaaatccaatgaaaattggtttttc |
27608392 |
T |
|
| Q |
109 |
-tagaaggatgtaaccagca---tagttgccttttgcataac--agactacaatagaatagtttaaagcatcaattaacactagatagcaagggaatgtt |
202 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
27608393 |
ctagaaggatgtaaccagcagcatagtttccttttgcataaataaaactacaatagaatagtttaaagcatcaattaacactagataacaaggaaatgtt |
27608492 |
T |
|
| Q |
203 |
ctcaccgttgagctgatgtgcatcacatgggaatatcgttcaacattcataagcttctcaaccttaacagaaccactttttgcaacctacaaacagaact |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27608493 |
ctcaccgttgagctgatgtgcatcacatgggaatatcgttcaacattcataagcttctcaaccttaacagaaccactttttgcaacctgcaaacagaact |
27608592 |
T |
|
| Q |
303 |
tttgttagcttaaccatagcagattgaagtacataatacaaactatcttg |
352 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
27608593 |
tttgttagcataaccatagcagattgaagtacagaatatgaactatcttg |
27608642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 10 - 352
Target Start/End: Original strand, 34496749 - 34497094
Alignment:
| Q |
10 |
aggagcacagacatctgcaatgttaccatctgattttacc-aagaatcacgtgtattaattcaaccggcaaagggaaaatcaaatgaaaattggtttttc |
108 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||| |||||| || ||||||||||||||| |||||||||||||| |||||||||| ||||||| |
|
|
| T |
34496749 |
aggaacacagacatctgcaatgttaccattggatttttttgaagaattacatgtattaattcaaccagcaaagggaaaatccaatgaaaattagtttttc |
34496848 |
T |
|
| Q |
109 |
-tagaaggatgtaaccagcatagttgccttttgcataacaga-ctacaatagaatagtttaaagcatcaattaacactagatagcaagggaatgttctca |
206 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||| | | |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
34496849 |
ctagaaggatgtaaccaacatagtttccttttgcataaaaaaactacaatagaatagtttaaagcatcaattaacactagataacaaggaaatgttctca |
34496948 |
T |
|
| Q |
207 |
ccgttgagctgatgtgcatcacatgggaatatcgttcaacattcataagcttctcaaccttaacagaaccactttttgcaacctacaaacagaacttttg |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34496949 |
ccgttgagctgatgtgcatcacatgggaatatcgttcaacattcataagcttctcaaccttaacagaaccactttttgcaacctgcaaacagaacttttg |
34497048 |
T |
|
| Q |
307 |
ttagcttaaccatagcagattgaagtacataatacaaactatcttg |
352 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
34497049 |
ttagcataaccatagcagattgaagtacagaatatgaactatcttg |
34497094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 276
Target Start/End: Original strand, 51683738 - 51683802
Alignment:
| Q |
212 |
gagctgatgtgcatcacatgggaatatcgttcaacattcataagcttctcaaccttaacagaacc |
276 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||| ||||||||| || ||||| | ||||||||| |
|
|
| T |
51683738 |
gagctgatgtgcataacatgggaatatcgctcaatattcataagtttttcaacttgaacagaacc |
51683802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 481
Target Start/End: Complemental strand, 21898945 - 21898886
Alignment:
| Q |
422 |
tattgtcatagttgttacaaacaaaggaataaaactttccgactgtaaatccatgataca |
481 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||| |||| |||||||||||||| |
|
|
| T |
21898945 |
tattgtcatagttgttacaaagaaaggaataatacttaataactgcaaatccatgataca |
21898886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University