View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9604_low_7 (Length: 626)
Name: NF9604_low_7
Description: NF9604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9604_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 402; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 151 - 613
Target Start/End: Complemental strand, 23267344 - 23266883
Alignment:
| Q |
151 |
cctaaaatatcccttgccacatcaatagtggtacaaagggtctaccaaaagagtggtctgtgtatctttttcctaaacaaaagtactatattcctatgaa |
250 |
Q |
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|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||| |
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| T |
23267344 |
cctaaaatgtcccttgccacatcaatagtg-tacaaagggtctaccaaaagagtggtctatgtatctttttcctaaacaaaaatactataatcctatgaa |
23267246 |
T |
|
| Q |
251 |
tactttatcataattctatatgcaataactataaatggaaggaagagtcaaaaatagtatattccaactagtcaattcaataaccttatataataatggt |
350 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23267245 |
tactttatcataattatatatgcaataactataaatggaaggaagagccaaaaatagtatattccaactagtcaattcaataaccttatataataatggt |
23267146 |
T |
|
| Q |
351 |
tagctagatattttgcccacatgccttnnnnnnntgaatatttagataacgtggttcgtttttagccaagtgttcctcttttgttgtcacactcaataca |
450 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
23267145 |
tagctagatattttgcccacatgccttaaaaaaatgaatatttagataacgtggttcgtttttagccaagtgttcctcttttgttgtcacagtcaataca |
23267046 |
T |
|
| Q |
451 |
cacaagcacaatttccctctgtccctactctcttttctcaacggtttccctttctttctctttcaaaataattgataaccaatcacaaagcctccaactt |
550 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23267045 |
cacaagcacactttccctctgtccctactctcttttctcaacggtttccctttctttctctttcaaaataattgataaccaatcacaaagcctccaactt |
23266946 |
T |
|
| Q |
551 |
aggaaatagctcctcacacaaaactcacacactcacaaacactctgcctgttaccttattctt |
613 |
Q |
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| T |
23266945 |
aggaaatagctcctcacacaaaactcacacactcacaaacactctgcctgttaccttattctt |
23266883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 479 - 613
Target Start/End: Complemental strand, 23258500 - 23258369
Alignment:
| Q |
479 |
tctcttttctcaacggtttccctttctttctctttcaaaataattgataaccaatcacaaagcctccaacttaggaaatagctc-ctcacacaaaactca |
577 |
Q |
| |
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|||||||||||| | |||||||||||||| ||| |||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||| || |
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| T |
23258500 |
tctcttttctcatctgtttccctttcttt----ttccaaataattgataaccaatcacacagcctccaacttgggaaatagctcactcacacaaaacaca |
23258405 |
T |
|
| Q |
578 |
cacactcacaaacactctgcctgttaccttattctt |
613 |
Q |
| |
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|||||| ||||| ||||| ||||||||||||||||| |
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| T |
23258404 |
cacacttacaaatactctacctgttaccttattctt |
23258369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 389 - 613
Target Start/End: Complemental strand, 23248199 - 23247979
Alignment:
| Q |
389 |
tatttagataacgtggttcgtttttagccaagtgttcctcttttgttgtcacactcaatacacacaagcacaatttccctctgtccctactctct--ttt |
486 |
Q |
| |
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||||| |||||||||| | ||||| |||||| ||||||||||| |||| || || |||||||||||||| ||| |||||||||||||||| ||| |
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| T |
23248199 |
tattttgataacgtggcttgttttgagccaaatgttcctctttcattgtaactgtcgctacacacaagcacactttt--tctgtccctactctctctttt |
23248102 |
T |
|
| Q |
487 |
ctcaacggtttccctttctttctctttcaaaataattgataaccaatcacaaagcctccaacttaggaaatagctc-ctcacacaaaactcacacactca |
585 |
Q |
| |
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|||| | |||||||||||| ||||| ||| | || | |||||||||||| |||||||||| | || |||||| |||||||||||| |||||||||| |
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| T |
23248101 |
ctcatctgtttccctttct----ctttccaaacatttcttgaccaatcacaaaacctccaacttggcaattagctcgctcacacaaaacacacacactca |
23248006 |
T |
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| Q |
586 |
caaacactctgcctgttaccttattctt |
613 |
Q |
| |
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|||||||| ||||||||||||||||||| |
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| T |
23248005 |
caaacact-tgcctgttaccttattctt |
23247979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 389 - 587
Target Start/End: Complemental strand, 23252631 - 23252434
Alignment:
| Q |
389 |
tatttagataacgtggttcgtttttagccaagtgttcctcttttgttgtcacactcaatacacacaagcacaatttccctctgtccctactctctttt-- |
486 |
Q |
| |
|
||||| |||||||||| | ||||| |||||| ||||||||||| |||| | ||| ||||| |||||||| || ||||||||||||||||| || |
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| T |
23252631 |
tattttgataacgtggcttgttttgagccaaatgttcctctttcattgtaattgtcactacacgcaagcacaccttttctctgtccctactctctctttg |
23252532 |
T |
|
| Q |
487 |
ctcaacggtttccctttctttctctttcaaaataattgataaccaatcacaaagcctccaacttaggaaatagc-tcctcacacaaaactcacacactca |
585 |
Q |
| |
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|||| | |||||||||||| ||||| ||||| || ||||||||||||||||||||||||| | || |||| | |||||||||||| |||||||||| |
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| T |
23252531 |
ctcatctgtttccctttct----ctttccaaatatttcttaaccaatcacaaagcctccaacttggcaactagcttgctcacacaaaacacacacactca |
23252436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 23267480 - 23267446
Alignment:
| Q |
15 |
tggtggtgtcggtgaaggatgtggtgatggctgac |
49 |
Q |
| |
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| T |
23267480 |
tggtggtgtcggtgaaggatgtggtgatggctgac |
23267446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 147 - 224
Target Start/End: Complemental strand, 18599009 - 18598932
Alignment:
| Q |
147 |
aattcctaaaatatcccttgccacatcaatagtggtacaaagggtctaccaaaagagtggtctgtgtatctttttcct |
224 |
Q |
| |
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||||| |||||| |||||| ||||||||| ||||||||||||||| ||||||||||||||||| ||||||| |||||| |
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| T |
18599009 |
aattcttaaaatgtcccttaccacatcaacagtggtacaaagggtgtaccaaaagagtggtctatgtatctatttcct |
18598932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 147 - 224
Target Start/End: Original strand, 12105382 - 12105460
Alignment:
| Q |
147 |
aattcctaaaatatcccttgccacatcaatagtggta-caaagggtctaccaaaagagtggtctgtgtatctttttcct |
224 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||| ||||||||| ||||||| |||||||||||||| |
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| T |
12105382 |
aattcctaaaatatcccttgccacatcagcagtggtataaaagggtgtaccaaaagggtggtctatgtatctttttcct |
12105460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 46644200 - 46644132
Alignment:
| Q |
147 |
aattcctaaaatatcccttgccacatcaatagtggtac-aaagggtctaccaaaagagtggtctgtgta |
214 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||| ||||||| ||||||||||||||||| |||| |
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|
| T |
46644200 |
aattcctaaaatgtcccttgccacatcaccagtggtacaaaagggtgtaccaaaagagtggtctatgta |
46644132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 147 - 190
Target Start/End: Original strand, 32179271 - 32179314
Alignment:
| Q |
147 |
aattcctaaaatatcccttgccacatcaatagtggtacaaaggg |
190 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32179271 |
aattcctaaaatatcccttgccacatcagcagtggtacaaaggg |
32179314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 147 - 221
Target Start/End: Original strand, 1326461 - 1326536
Alignment:
| Q |
147 |
aattcctaaaatatcccttgccacatcaatagtggtac-aaagggtctaccaaaagagtggtctgtgtatcttttt |
221 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||| |||| || ||||||||| ||||||| ||||| ||||| |
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|
| T |
1326461 |
aattcctaaaatgtcccttgccacatcagcagtggtacaaaagagtgtaccaaaagggtggtctatgtattttttt |
1326536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 224
Target Start/End: Original strand, 6408334 - 6408414
Alignment:
| Q |
147 |
aattcctaaaatatcccttgccacatcaatagtggtacaaagg---gtctaccaaaagagtggtctgtgtatctttttcct |
224 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||| || |||||||||||| |||| | |||| ||||||| |
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| T |
6408334 |
aattcctaaaatatcccttgccacatgagcagtggtacaaaggggtgtataccaaaagagttgtctatttatcattttcct |
6408414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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