View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9605_1 (Length: 522)
Name: NF9605_1
Description: NF9605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9605_1 |
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Alignment Details
Target: chr6 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 30 - 497
Target Start/End: Original strand, 35171430 - 35171898
Alignment:
| Q |
30 |
aatatgggcctatggatgataagcaggagtgctcttctgtttctaactacgaaaccaagtttttaacttcccatgactgctttgtaaacaatggaccaca |
129 |
Q |
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| T |
35171430 |
aatatgggcctatggatgataagcaggagtgctcttctgtttctaactacgaaaccaagtttttaacttcccatgactgctttgtaaacaatggaccaca |
35171529 |
T |
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| Q |
130 |
gaagccaaatgggagaagccaacggttaggtgaaggaataagctgcaatgaacaaatgtactccataaagatgcaggatcctaaaagttctgattctaca |
229 |
Q |
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| T |
35171530 |
gaagccaaatgggagaagccaacggttagatgaaggaataagctgcaatgaacaaattgactccataaagatgcaggatcctaaaagttctgattctaca |
35171629 |
T |
|
| Q |
230 |
gtcaccgaatcaagtccccaaattatacatcaatgttgtttacaaagggcaaatgaaatgacatgtattcggaatcaactttcagatattgaaatcaaac |
329 |
Q |
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| T |
35171630 |
gtcaccgaatcaagtccccaaattacacatcaatgttgtttacaaagggcaaatgaaatgacttgtattcggaatcaactttcagatattgaaatcaaac |
35171729 |
T |
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| Q |
330 |
aggaaaacatgatgcatcaattacaggtattaatattctacatactaacatatatacatgtctatttgtaagtttttgagtcttgctgctgctagatact |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35171730 |
aggaaaacatgatgcatcaattacaggtattaatattctacatactaacatatatacatgtctatttgtaagtttttgagtcttgctgctgctagatact |
35171829 |
T |
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| Q |
430 |
ctcctacatacatacagtag-tcatttattgaacattatcatccttttttactttccacaacctgtgat |
497 |
Q |
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|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35171830 |
ctcctacatacatacagtagttcatttatttaacattatcatccttttttactttccacaacctgtgat |
35171898 |
T |
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