View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9605_10 (Length: 316)
Name: NF9605_10
Description: NF9605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9605_10 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 4 - 287
Target Start/End: Original strand, 6627619 - 6627902
Alignment:
| Q |
4 |
tcccaacttccgaacgagagatcaacaccatcatagaacacaggtagaaccataagatcatctttggttcggcaacactcagttannnnnnnaaattcat |
103 |
Q |
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| T |
6627619 |
tcccaacttccgaacgagagatcaacaccatcatagaacacaggtagaaccataagatcatctttggttcggcaacactcagttatttttttaaattcat |
6627718 |
T |
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| Q |
104 |
gaagacacgaccttgaattgaaatagtctcttgaaaatacaattacaaaaactttgcaatctcttataacattgagcacagaggttggtttttctcgatc |
203 |
Q |
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| T |
6627719 |
gaagacacgaccttgaattgaaatagtctcttgaaaatacaattacaaaaactttgcaatctcttataacattgagcacagaggttggtttttctcgatc |
6627818 |
T |
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| Q |
204 |
tccatagccatccctctcattctcccagaaaacatcaactccagcttttctactaagagcattatagatactgaaaacaaaaga |
287 |
Q |
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| T |
6627819 |
tccatagccatccctctcattctcccagaaaacatcaactccagcttttctactaagagcattatagatactgaaaacaaaaga |
6627902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 176
Target Start/End: Complemental strand, 6646296 - 6646150
Alignment:
| Q |
30 |
accatcatagaacacaggtagaaccataagatcatctttggttcggcaacactcagttannnnnnnaaattcatgaagacacgaccttgaattgaaatag |
129 |
Q |
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| T |
6646296 |
accatcatagagtactggaagaacaataagaccacttgtggttaggcaacactcggttatcttctcaaattcttgaagacacgatcttgaattaacataa |
6646197 |
T |
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| Q |
130 |
tctcttgaaaatacaattacaaaaactttgcaatctcttataacatt |
176 |
Q |
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| T |
6646196 |
tttcttgaaaatactattacagcaactttgcaatcttctataacatt |
6646150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 275
Target Start/End: Original strand, 6551502 - 6551578
Alignment:
| Q |
199 |
cgatctccatagccatccctctcattctcccagaaaacatcaactccagcttttctactaagagcattatagatact |
275 |
Q |
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| T |
6551502 |
cgatctccataaccaagcctcttttcctcccagaaaacaacaaatccagcttttatgctaagagtcttatagatact |
6551578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 6737737 - 6737677
Alignment:
| Q |
28 |
acaccatcatagaacacaggtagaaccataagatcatctttggttcggcaacactcagtta |
88 |
Q |
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| T |
6737737 |
acaccatcatagaacaaaggtaaaacaatgggaccatctttagttcggtaacactcagtta |
6737677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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