View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9605_4 (Length: 462)
Name: NF9605_4
Description: NF9605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9605_4 |
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Alignment Details
Target: chr5 (Bit Score: 404; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 33 - 440
Target Start/End: Complemental strand, 3203166 - 3202759
Alignment:
| Q |
33 |
aagaattgtggggaaattccaatcaaggtaaagggatcataattggaatgctggacacaggaataaccctctcacatccttccttttccgatgagggaat |
132 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3203166 |
aagaattgtggggaaattccaatcaaggtaaagggatcataattggaatgctggacacaggaataaccctctcacatccttccttttccgatgagggaat |
3203067 |
T |
|
| Q |
133 |
gccttctccacctgcaaaatggaatggccattgtgaattcacaggggagaggatttgtaacaagaagatcattggagcaaggaacatcgtaaattcatcc |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3203066 |
gccttctccacctgcaaaatggaatggccattgtgaattcacaggggagaggatttgtaacaagaagatcattggagcaaggaacatcgtaaattcatcc |
3202967 |
T |
|
| Q |
233 |
cttccatacgattatgttggccacggaactcacacggccagcacggccgctggaaggcccgtaaaaggtgctaatgtctttggtaatgccaatggtactg |
332 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3202966 |
cttccatacgattatgttggccacggaactcacacggccagcacggccgctggaaggcccgtgaaaggtgctaatgtctttggtaatgccaatggtactg |
3202867 |
T |
|
| Q |
333 |
caattggcatggcaccatatgcacacttggcaatttacaaagtatgcggcgtctttggttgtgctgaaagtgtcatattagctggaatggatgttgctgt |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3202866 |
caattggcatggcaccatatgcacacttggcaatttacaaagtatgcggcgtctttggttgtgctgaaagtgtcatattagctggaatggatgttgctgt |
3202767 |
T |
|
| Q |
433 |
tgatgatg |
440 |
Q |
| |
|
|||||||| |
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|
| T |
3202766 |
tgatgatg |
3202759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 33 - 440
Target Start/End: Complemental strand, 3209140 - 3208733
Alignment:
| Q |
33 |
aagaattgtggggaaattccaatcaaggtaaagggatcataattggaatgctggacacaggaataaccctctcacatccttccttttccgatgagggaat |
132 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||| || |
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|
| T |
3209140 |
aagacttgtggggaaattccaatcaaggtaaagggatcataattggaatcgtcgacacaggaataaccctctcacatccttccttttctgatgaggggat |
3209041 |
T |
|
| Q |
133 |
gccttctccacctgcaaaatggaatggccattgtgaattcacaggggagaggatttgtaacaagaagatcattggagcaaggaacatcgtaaattcatcc |
232 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||| |
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| T |
3209040 |
gccttcaccacctgcaaaatggaatggccattgtgaattcacaggggagaggatttgtaacaagaagatcattggagcaaggacctttgtaaattcatcc |
3208941 |
T |
|
| Q |
233 |
cttccatacgattatgttggccacggaactcacacggccagcacggccgctggaaggcccgtaaaaggtgctaatgtctttggtaatgccaatggtactg |
332 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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|
| T |
3208940 |
cttccatacgatgatgttggccatggaactcacacagccagcacggccgctggaaggcccgtgcaaggtgctaatgtctttggtaatgctaatggtactg |
3208841 |
T |
|
| Q |
333 |
caattggcatggcaccatatgcacacttggcaatttacaaagtatgcggcgtctttggttgtgctgaaagtgtcatattagctggaatggatgttgctgt |
432 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||| |||||||| ||||||||||||||||||| ||| || |
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|
| T |
3208840 |
caattggcatggcaccatatgcacacttggcaatttacaaagtatgcaacatctacggttgtactgaaagttcaatattagctggaatggatgctgcagt |
3208741 |
T |
|
| Q |
433 |
tgatgatg |
440 |
Q |
| |
|
|||||||| |
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|
| T |
3208740 |
tgatgatg |
3208733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 46 - 435
Target Start/End: Complemental strand, 3217075 - 3216677
Alignment:
| Q |
46 |
aaattccaatcaaggtaaagggatcataattggaatgctggacacaggaataaccctctcacatccttccttttccgatgagggaatgccttctccacct |
145 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||| || ||||||||||| ||||||||| |
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|
| T |
3217075 |
aaattccaatctcggtaaagggatcataattggaatcctggacacaggaatatccctctcccatccttccttttctgacgagggaatgccctctccacct |
3216976 |
T |
|
| Q |
146 |
gcaaaatggaatggccattgtgaattcacaggggagaggatttgtaacaagaagatcattggagcaaggaacatcgt---------aaattcatcccttc |
236 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||| ||||| ||| |||| |
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|
| T |
3216975 |
gcaaaatggaatggccactgtgaattcacaggggaaaggatttgtaacaagaagctcattggagcaaggaacttcgtcacagacacaaatttatctcttc |
3216876 |
T |
|
| Q |
237 |
catacgattatgttggccacggaactcacacggccagcacggccgctggaaggcccgtaaaaggtgctaatgtctttggtaatgccaatggtactgcaat |
336 |
Q |
| |
|
||| |||| |||||||||||||||||||||||||||||||||| |||||||||| ||| | || || |||||||| || || || || ||||| |||| |
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| T |
3216875 |
cattcgatgatgttggccacggaactcacacggccagcacggctgctggaaggcttgtacagggggccaatgtcttcggcaacgctaaaggtacggcaac |
3216776 |
T |
|
| Q |
337 |
tggcatggcaccatatgcacacttggcaatttacaaagtatgcggcgtctttggttgtgctgaaagtgtcatattagctggaatggatgttgctgttga |
435 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||||| || | ||||||| |||| |||| | |||||| |||||||||| ||| ||||| |
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|
| T |
3216775 |
aggcatggcaccagatgcacacttggcaatctacaaagtatgcagcagcagtggttgtcctgagagtgcaacattagcaggaatggatgctgcagttga |
3216677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 174
Target Start/End: Complemental strand, 3232140 - 3232106
Alignment:
| Q |
140 |
ccacctgcaaaatggaatggccattgtgaattcac |
174 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
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|
| T |
3232140 |
ccacctgcaaaatggaaaggccattgtgaattcac |
3232106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 173
Target Start/End: Original strand, 3177901 - 3177934
Alignment:
| Q |
140 |
ccacctgcaaaatggaatggccattgtgaattca |
173 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
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|
| T |
3177901 |
ccacctgcaaaatggaaaggccattgtgaattca |
3177934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 3221926 - 3221873
Alignment:
| Q |
121 |
cgatgagggaatgccttctccacctgcaaaatggaatggccattgtgaattcac |
174 |
Q |
| |
|
|||||| |||||||| | ||||||||||||||||| |||||||| |||||||| |
|
|
| T |
3221926 |
cgatgaaggaatgccgccaccacctgcaaaatggaaaggccattgcgaattcac |
3221873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 3240939 - 3240906
Alignment:
| Q |
140 |
ccacctgcaaaatggaatggccattgtgaattca |
173 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
3240939 |
ccacctgcaaaatggaaaggccattgtgaattca |
3240906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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