View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9605_5 (Length: 451)
Name: NF9605_5
Description: NF9605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9605_5 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 58 - 315
Target Start/End: Complemental strand, 54572532 - 54572274
Alignment:
| Q |
58 |
gtatttttgataactgagaaagtgtgaatgggg-attcatggaggaatgaaaatcaatgatatagatttgtcagtcctaaccaatgattcatggagaccc |
156 |
Q |
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| T |
54572532 |
gtatttttgataactgagaaagtgtgaatgggggattcatggaggaatgaaaatcaatgatatagatttgtcagtcctaaccaatgattcatggagaccc |
54572433 |
T |
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| Q |
157 |
tatgcattttgcaatgaaattctatcccaaagtatataaggctcttactcacttaattgcaattatttactcttaaaaagtgaattaactacctatgaag |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54572432 |
tatgcattttgcaatgaaattctatcccaaagtatataaggctcttactcacttaattgcaattatttactcttaaaaagtgaattaactacctatgaag |
54572333 |
T |
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| Q |
257 |
cacaagcacatatacgaatagaacacaacaccgataataattagagaaaatgacaagta |
315 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54572332 |
cacaagcacatataagaatagaacacaacaccgataataattagagaaaatgacaagta |
54572274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 58 - 315
Target Start/End: Complemental strand, 55155799 - 55155541
Alignment:
| Q |
58 |
gtatttttgataactgagaaagtgtgaatgg-ggattcatggaggaatgaaaatcaatgatatagatttgtcagtcctaaccaatgattcatggagaccc |
156 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55155799 |
gtatttttgataactgagaaagtgtgaatggaggattcatggaggaatgaaaatcaatgatatagatttgtcagtcctaaccaatgattcatggagaccc |
55155700 |
T |
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| Q |
157 |
tatgcattttgcaatgaaattctatcccaaagtatataaggctcttactcacttaattgcaattatttactcttaaaaagtgaattaactacctatgaag |
256 |
Q |
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| T |
55155699 |
tatgcattttgcaatgaaattctatcccaaagtatataaggctcttactcacttaattgcaattatttactcttaaaaagtgaattaactacctatgaag |
55155600 |
T |
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| Q |
257 |
cacaagcacatatacgaatagaacacaacaccgataataattagagaaaatgacaagta |
315 |
Q |
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| T |
55155599 |
cacaagcacatataagaatagaacacaacaccgataataattagagaaaatgacaagta |
55155541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 59 - 145
Target Start/End: Complemental strand, 4097355 - 4097269
Alignment:
| Q |
59 |
tatttttgataactgagaaagtgtgaatggggattcatggaggaatgaaaatcaatgatatagatttgtcagtcctaaccaatgatt |
145 |
Q |
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| T |
4097355 |
tatttttgataactcagaaagcgtgaatggggattctttgaggaatcaaaatcaatgatttagatttctcagtcctaatcaatgatt |
4097269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 386 - 451
Target Start/End: Complemental strand, 54572222 - 54572157
Alignment:
| Q |
386 |
taaccattatgggattgattttgggcaggagcagcaacagagtaaagaaaggaagggccaacaagg |
451 |
Q |
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| T |
54572222 |
taaccattatgggattgattttgagcaggagcagcaacagagtggagaaaggaagggccaacaagg |
54572157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 386 - 451
Target Start/End: Complemental strand, 55155489 - 55155424
Alignment:
| Q |
386 |
taaccattatgggattgattttgggcaggagcagcaacagagtaaagaaaggaagggccaacaagg |
451 |
Q |
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| T |
55155489 |
taaccattatgggattgattttgagcaggagcagcaacagagtggagaaaggaagggccaacaagg |
55155424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 350
Target Start/End: Complemental strand, 4097167 - 4097125
Alignment:
| Q |
308 |
gacaagtaagcaactagtgtatgagatataaagcggtaataaa |
350 |
Q |
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| T |
4097167 |
gacaagtaagtaactagtgtatcagatataaagtggtaataaa |
4097125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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