View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9605_low_1 (Length: 518)

Name: NF9605_low_1
Description: NF9605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9605_low_1
NF9605_low_1
[»] chr1 (40 HSPs)
chr1 (26-485)||(32882564-32883018)
chr1 (293-513)||(34775043-34775262)
chr1 (235-469)||(46768398-46768627)
chr1 (231-500)||(11439647-11439919)
chr1 (231-464)||(27102412-27102636)
chr1 (304-469)||(16148990-16149155)
chr1 (293-462)||(32863237-32863406)
chr1 (231-513)||(10785088-10785370)
chr1 (231-349)||(9312967-9313087)
chr1 (231-345)||(376434-376549)
chr1 (248-378)||(52278589-52278717)
chr1 (231-355)||(27905760-27905885)
chr1 (260-355)||(41126107-41126204)
chr1 (295-404)||(2987816-2987924)
chr1 (263-353)||(38544375-38544467)
chr1 (232-349)||(49820489-49820609)
chr1 (321-464)||(31290740-31290879)
chr1 (233-343)||(50588906-50589014)
chr1 (319-406)||(6582968-6583055)
chr1 (231-349)||(4431009-4431129)
chr1 (233-280)||(10605100-10605147)
chr1 (294-341)||(42374526-42374573)
chr1 (293-410)||(46603636-46603751)
chr1 (411-478)||(46692627-46692694)
chr1 (411-509)||(24449738-24449834)
chr1 (444-498)||(24659115-24659168)
chr1 (444-509)||(7857829-7857893)
chr1 (293-338)||(17033939-17033984)
chr1 (231-280)||(30762016-30762065)
chr1 (293-340)||(37200485-37200532)
chr1 (371-462)||(38548845-38548934)
chr1 (374-464)||(41126261-41126351)
chr1 (411-509)||(5389230-5389325)
chr1 (411-477)||(5459368-5459434)
chr1 (295-349)||(38546876-38546930)
chr1 (231-280)||(7451888-7451937)
chr1 (303-343)||(19598990-19599031)
chr1 (231-280)||(34159048-34159097)
chr1 (358-486)||(38544511-38544637)
chr1 (422-462)||(24684310-24684350)
[»] chr2 (37 HSPs)
chr2 (231-513)||(10173206-10173488)
chr2 (231-463)||(7696184-7696415)
chr2 (231-438)||(4974990-4975199)
chr2 (231-438)||(4992898-4993107)
chr2 (293-511)||(12342992-12343195)
chr2 (237-469)||(34230417-34230648)
chr2 (231-349)||(4472277-4472397)
chr2 (264-369)||(13337565-13337671)
chr2 (382-509)||(387351-387476)
chr2 (231-343)||(25504516-25504629)
chr2 (311-513)||(37770359-37770553)
chr2 (374-514)||(16952154-16952294)
chr2 (374-514)||(17022819-17022959)
chr2 (374-514)||(17060125-17060265)
chr2 (386-509)||(7460852-7460974)
chr2 (261-340)||(27740331-27740412)
chr2 (293-455)||(41113431-41113590)
chr2 (293-340)||(22884805-22884852)
chr2 (231-339)||(33788253-33788362)
chr2 (411-509)||(39338674-39338769)
chr2 (231-337)||(29487447-29487553)
chr2 (236-343)||(15361063-15361172)
chr2 (294-464)||(29139642-29139813)
chr2 (231-414)||(29997215-29997399)
chr2 (293-353)||(2063208-2063269)
chr2 (382-485)||(5254452-5254553)
chr2 (386-509)||(14106305-14106427)
chr2 (418-509)||(17116694-17116784)
chr2 (391-509)||(7874467-7874583)
chr2 (311-369)||(41086513-41086570)
chr2 (442-517)||(14405366-14405441)
chr2 (385-461)||(41086572-41086648)
chr2 (411-478)||(10524306-10524373)
chr2 (293-343)||(24165867-24165917)
chr2 (293-354)||(16952035-16952096)
chr2 (293-354)||(17022700-17022761)
chr2 (234-282)||(40470793-40470840)
[»] chr8 (28 HSPs)
chr8 (293-514)||(10248256-10248479)
chr8 (231-469)||(12197702-12197941)
chr8 (231-469)||(12442130-12442369)
chr8 (231-469)||(17656363-17656603)
chr8 (295-460)||(8862314-8862481)
chr8 (338-473)||(43312375-43312509)
chr8 (295-404)||(41790961-41791070)
chr8 (382-509)||(20138603-20138726)
chr8 (233-323)||(8843743-8843833)
chr8 (295-343)||(30235809-30235857)
chr8 (293-340)||(17720398-17720444)
chr8 (418-497)||(31207177-31207254)
chr8 (237-340)||(5214941-5215044)
chr8 (360-406)||(30235889-30235935)
chr8 (231-274)||(2613174-2613217)
chr8 (293-340)||(9831694-9831741)
chr8 (420-478)||(9519706-9519764)
chr8 (332-438)||(22325826-22325931)
chr8 (423-485)||(35816066-35816128)
chr8 (411-509)||(41893210-41893306)
chr8 (411-464)||(16457283-16457336)
chr8 (382-469)||(36631039-36631123)
chr8 (305-353)||(5221506-5221553)
chr8 (307-343)||(10552609-10552645)
chr8 (411-463)||(24995202-24995254)
chr8 (236-353)||(25184754-25184871)
chr8 (411-498)||(37986666-37986751)
chr8 (420-496)||(38577606-38577681)
[»] chr7 (35 HSPs)
chr7 (237-464)||(33719185-33719413)
chr7 (233-513)||(3478522-3478800)
chr7 (231-464)||(1321014-1321246)
chr7 (231-513)||(24324425-24324708)
chr7 (231-513)||(6716363-6716647)
chr7 (237-461)||(42532892-42533117)
chr7 (324-418)||(6492852-6492946)
chr7 (231-330)||(6726046-6726147)
chr7 (293-409)||(16828791-16828906)
chr7 (233-338)||(28534134-28534240)
chr7 (411-509)||(47325693-47325789)
chr7 (382-509)||(44353345-44353468)
chr7 (231-344)||(8745469-8745583)
chr7 (294-398)||(16954775-16954878)
chr7 (236-329)||(47456706-47456800)
chr7 (382-478)||(3867322-3867415)
chr7 (236-349)||(26385792-26385903)
chr7 (231-353)||(9107481-9107605)
chr7 (293-340)||(13312180-13312227)
chr7 (351-410)||(28534277-28534336)
chr7 (411-509)||(31971942-31972038)
chr7 (358-464)||(23983425-23983530)
chr7 (444-498)||(34390149-34390202)
chr7 (294-344)||(36674809-36674859)
chr7 (411-509)||(38306438-38306534)
chr7 (433-513)||(8745323-8745405)
chr7 (231-345)||(44755906-44756021)
chr7 (260-353)||(23983574-23983669)
chr7 (382-486)||(35745601-35745705)
chr7 (261-329)||(9350067-9350136)
chr7 (293-328)||(22567783-22567818)
chr7 (261-351)||(2359342-2359437)
chr7 (448-509)||(6585058-6585118)
chr7 (293-349)||(25438691-25438748)
chr7 (231-280)||(40292637-40292685)
[»] chr5 (29 HSPs)
chr5 (295-513)||(13953941-13954159)
chr5 (294-514)||(26045655-26045876)
chr5 (261-423)||(30097593-30097757)
chr5 (231-464)||(26405175-26405406)
chr5 (231-463)||(8297694-8297924)
chr5 (291-513)||(14302133-14302356)
chr5 (293-489)||(7682747-7682943)
chr5 (231-416)||(7194928-7195114)
chr5 (233-461)||(25992233-25992453)
chr5 (382-508)||(7161795-7161919)
chr5 (337-514)||(21398054-21398231)
chr5 (293-358)||(24071952-24072017)
chr5 (293-441)||(10174923-10175069)
chr5 (231-455)||(33109829-33110050)
chr5 (231-343)||(8731278-8731391)
chr5 (257-343)||(31742504-31742592)
chr5 (231-337)||(23426646-23426754)
chr5 (411-514)||(18593415-18593516)
chr5 (295-406)||(31721950-31722058)
chr5 (257-329)||(26367632-26367706)
chr5 (251-354)||(25657767-25657871)
chr5 (386-439)||(5656878-5656931)
chr5 (294-335)||(27713421-27713462)
chr5 (292-349)||(33258579-33258636)
chr5 (382-464)||(18313425-18313504)
chr5 (312-380)||(37108103-37108170)
chr5 (293-407)||(5187219-5187332)
chr5 (411-464)||(29087699-29087752)
chr5 (303-343)||(6159827-6159866)
[»] scaffold0050 (1 HSPs)
scaffold0050 (231-469)||(36924-37161)
[»] chr3 (38 HSPs)
chr3 (231-469)||(50518716-50518952)
chr3 (236-513)||(4170914-4171193)
chr3 (233-349)||(25648017-25648135)
chr3 (231-355)||(46358009-46358135)
chr3 (237-490)||(37123572-37123818)
chr3 (231-398)||(14280176-14280343)
chr3 (237-464)||(48892986-48893214)
chr3 (231-353)||(32010117-32010241)
chr3 (296-464)||(14194154-14194317)
chr3 (307-469)||(28937427-28937579)
chr3 (231-464)||(33143579-33143812)
chr3 (236-501)||(7105025-7105294)
chr3 (231-349)||(14893264-14893384)
chr3 (382-509)||(43012552-43012677)
chr3 (420-486)||(45398994-45399060)
chr3 (420-509)||(23328167-23328255)
chr3 (295-355)||(1652569-1652628)
chr3 (358-462)||(25594304-25594406)
chr3 (238-349)||(25594142-25594255)
chr3 (313-378)||(41039463-41039527)
chr3 (382-509)||(53248077-53248200)
chr3 (400-464)||(9583852-9583916)
chr3 (310-442)||(12086483-12086615)
chr3 (234-349)||(823027-823143)
chr3 (293-335)||(14754974-14755016)
chr3 (412-478)||(20611988-20612054)
chr3 (411-509)||(47235875-47235971)
chr3 (413-512)||(14879607-14879708)
chr3 (360-403)||(1652648-1652691)
chr3 (411-462)||(30352249-30352300)
chr3 (411-478)||(34475564-34475631)
chr3 (418-464)||(2392321-2392367)
chr3 (418-464)||(2394085-2394131)
chr3 (420-498)||(40023389-40023466)
chr3 (373-418)||(32010027-32010072)
chr3 (382-478)||(19176710-19176806)
chr3 (358-410)||(27399218-27399270)
chr3 (293-349)||(37998900-37998956)
[»] chr4 (33 HSPs)
chr4 (231-514)||(16832646-16832933)
chr4 (305-479)||(19311069-19311242)
chr4 (294-464)||(49747748-49747917)
chr4 (231-464)||(41117595-41117827)
chr4 (231-464)||(38636861-38637093)
chr4 (234-514)||(19814847-19815132)
chr4 (311-463)||(39420745-39420896)
chr4 (261-349)||(28967209-28967299)
chr4 (236-345)||(42719494-42719605)
chr4 (405-514)||(19673269-19673377)
chr4 (247-344)||(48098645-48098744)
chr4 (357-490)||(25753364-25753500)
chr4 (237-339)||(35336914-35337013)
chr4 (420-486)||(31050478-31050544)
chr4 (376-514)||(48098502-48098641)
chr4 (293-469)||(22810864-22811025)
chr4 (231-319)||(9262807-9262897)
chr4 (233-329)||(21983504-21983601)
chr4 (231-335)||(52009173-52009279)
chr4 (331-464)||(53823151-53823281)
chr4 (293-342)||(46487621-46487670)
chr4 (404-512)||(35341141-35341247)
chr4 (360-406)||(43373864-43373910)
chr4 (236-397)||(2061464-2061627)
chr4 (293-360)||(25754199-25754265)
chr4 (295-349)||(38930122-38930177)
chr4 (235-337)||(20632128-20632233)
chr4 (293-339)||(35947998-35948044)
chr4 (405-478)||(20464796-20464869)
chr4 (295-335)||(19432386-19432426)
chr4 (419-499)||(30964624-30964702)
chr4 (131-163)||(32174341-32174373)
chr4 (295-335)||(43373784-43373824)
[»] scaffold1384 (1 HSPs)
scaffold1384 (298-469)||(1347-1522)
[»] scaffold0063 (1 HSPs)
scaffold0063 (257-513)||(58297-58556)
[»] chr6 (13 HSPs)
chr6 (231-349)||(3880239-3880359)
chr6 (293-514)||(15120293-15120508)
chr6 (236-469)||(20701430-20701667)
chr6 (235-355)||(17278093-17278215)
chr6 (234-367)||(6860348-6860484)
chr6 (233-329)||(16180486-16180583)
chr6 (291-406)||(26215711-26215826)
chr6 (295-335)||(12794465-12794505)
chr6 (418-497)||(14663266-14663343)
chr6 (312-354)||(20500282-20500323)
chr6 (234-351)||(34101520-34101639)
chr6 (423-513)||(13423622-13423716)
chr6 (295-335)||(26534424-26534464)
[»] scaffold1613 (2 HSPs)
scaffold1613 (263-353)||(654-746)
scaffold1613 (358-486)||(790-916)
[»] scaffold0200 (1 HSPs)
scaffold0200 (375-461)||(19603-19687)
[»] scaffold0002 (1 HSPs)
scaffold0002 (231-280)||(426555-426604)


Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 40)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 26 - 485
Target Start/End: Complemental strand, 32883018 - 32882564
Alignment:
Q  26 gtaagaatatgacgtgagtatgaaagaaagttgttcatgattgtcatacaatggttgtacaaatattattactcttgtagaactactcttacatttcgac 125  Q
    |||||||||| |||||||||||||||||||||||| |  ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  32883018 gtaagaatatcacgtgagtatgaaagaaagttgtttaaaattgtcataaaatggttgtacaaatattattactcttctagaactactcttacattttgac 32882919  T
Q  126 acccataaatttcatacactcattcaacatcatattttatatttatcgctttttctatcacatcaataacatatcgcattattctttgtctctatttann 225  Q
    ||| ||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||       
T  32882918 acc-ataaatttcttacactcattcaatatcatattttatatttatctctttttctatcacatcaataacatatcgcattattctctgtctctattt--- 32882823  T
Q  226 nnnnnaacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcggaatcaaaaaatacaaactaaaggcgccgtatataggcggaa 325  Q
         ||||||||||||||||||||||||||||||||||||||||||||||||    ||||||| ||||||||||||||||||||||||||||||| |||    
T  32882822 tttttaacagcaaattttattaaacaatcacatccctgctcaagacgaacagact--ggaatcagaaaatacaaactaaaggcgccgtatataggcagaa 32882725  T
Q  326 cacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgt 425  Q
    |||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  32882724 cacccgaaaataaacaccctaaaagacacccccgaggacaacacccaccaaaatatacatcaccgcctaaaactgactccttcacgaaaacgagcactgt 32882625  T
Q  426 aaacacgatatccaacatcacccatcgtcactactca-ccaccaacgaacacccctcaaaa 485  Q
    ||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||    
T  32882624 aaacacgatatccaacaccacccatcgtcactactcaccccccaacgaacacccctcaaaa 32882564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 293 - 513
Target Start/End: Complemental strand, 34775262 - 34775043
Alignment:
Q  293 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcc 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||  |||||||||||| |||||||||| || ||| | ||    
T  34775262 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccttaaaaaataccaatgaggacaacacccaccaaaatacacgtcatcacc 34775163  T
Q  393 taaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacg-aacacccctcaaaattaaaa 491  Q
    |||||| ||||||||||| |||||||  |||||||| |||| |||| |||  |||| ||||||||||||||| |||| | ||||||| | |||| | |||    
T  34775162 taaaacagactccttcacgaaaacgacaactgtaaaaacgaaatcccacactacccgtcgtcactactcacc-ccaatgaaacacccgtaaaaaat-aaa 34775065  T
Q  492 ctcccagtcctcaacaccaaag 513  Q
    |||||| |||||||||||||||    
T  34775064 ctcccaatcctcaacaccaaag 34775043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 235 - 469
Target Start/End: Complemental strand, 46768627 - 46768398
Alignment:
Q  235 gcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgcc-gtatataggcggaacacccg 331  Q
    |||||||||||||||||| || || | |||||||||||||||||||| ||  ||    |  |||||||| ||||||||| |||| |||||||||||||||    
T  46768627 gcaaattttattaaacaaccaaattcttgctcaagacgaacagagattggtgaaattgagcatacaaacaaaaggcgcccgtatgtaggcggaacacccg 46768528  T
Q  332 aaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacac 431  Q
    |||||||||||||||||| ||||| | ||||||||||| |||||||||  || ||||| |||||||| ||||||||||| ||||||| |||        |    
T  46768527 aaaataaacaccctaaaaaacacccccgaggacaacacccaccaaaattcacgtcaccacctaaaacagactccttcacgaaaacgaccac--------c 46768436  T
Q  432 gatatccaacatcacccatcgtcactactcaccaccaa 469  Q
    |||||||||||   ||||||||||||||||||| ||||    
T  46768435 gatatccaacactgcccatcgtcactactcacccccaa 46768398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 231 - 500
Target Start/End: Original strand, 11439647 - 11439919
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcggaatcaaaa----aatacaaactaaaggcgccgtatataggcggaac 326  Q
    |||| ||||||||||||||||| || ||| |||||||||||||||| |||||||  | ||||    ||||||||| ||||||| | ||||||| ||||||    
T  11439647 aacaacaaattttattaaacaaccagatctctgctcaagacgaacaaagatcgg--tgaaaatgagaatacaaacaaaaggcgacatatatagacggaac 11439744  T
Q  327 acccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgta 426  Q
    | ||||||||||||||||||||  |  || |||| |||||||  |||||||||| || ||||| |||||||| ||  ||||||| ||| | | ||| |||    
T  11439745 atccgaaaataaacaccctaaa--atccccctgaagacaacatccaccaaaatacacgtcaccacctaaaacagatcccttcacgaaagcaaccaccgta 11439842  T
Q  427 aacacgatatccaacatcacccatcgtcactact-caccaccaacg---aacacccctcaaaattaaaactcccagtc 500  Q
    || | ||||||||||| |||  |||||||||||| |||| |||| |   ||||||||||| |||| ||||||||||||    
T  11439843 aaaatgatatccaacaccacttatcgtcactactccacccccaaagaaaaacacccctcagaatt-aaactcccagtc 11439919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 231 - 464
Target Start/End: Complemental strand, 27102636 - 27102412
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 328  Q
    |||||||||||||||||||||| || ||| ||| |||||||||||| |||  ||  || |  | ||||||||| ||||| ||||||||||||||||||||    
T  27102636 aacagcaaattttattaaacaaccagatctctgttcaagacgaacaaagactggtgaacctgagaatacaaacaaaaggtgccgtatataggcggaacac 27102537  T
Q  329 ccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaa 428  Q
    ||||||||||||||||||||| |||||  |||||||||||| |||||||||         | |||||||| ||  | ||||| |||||   |||||||||    
T  27102536 ccgaaaataaacaccctaaaa-acacc-atgaggacaacacccaccaaaat---------cccctaaaacagatactttcacgaaaacagccactgtaaa 27102448  T
Q  429 cacgatatccaacatcacccatcgtcactactcacc 464  Q
     |||| |||||||| ||| |||||||||||||||||    
T  27102447 aacgaaatccaacaccactcatcgtcactactcacc 27102412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 304 - 469
Target Start/End: Complemental strand, 16149155 - 16148990
Alignment:
Q  304 aaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaaca-ctcaccaaaatatacatcaccgcctaaaactgac 402  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||| |  ||||||||| | | | | |||||| || ||||| |||||||| |||    
T  16149155 aaggcgccgtatataggcggaacacgcgaaaataaacaccctaaaagacaaccttgaggacaaaagcccgctaaaatacacgtcaccacctaaaacagac 16149056  T
Q  403 tccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaa 469  Q
     ||||||   ||||||  |||| ||| ||||||||||| | ||||||||||||||||||||| ||||    
T  16149055 accttcatgtaaacgactactg-aaaaacgatatccaaaagcacccatcgtcactactcacccccaa 16148990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 293 - 462
Target Start/End: Original strand, 32863237 - 32863406
Alignment:
Q  293 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcc 392  Q
    ||||||||||||| | | ||||||||||||||||||| |||||||||||||   ||| |||||   ||||||||||| |||||| ||| || ||||||||    
T  32863237 aatacaaactaaatgtgtcgtatataggcggaacacctgaaaataaacaccaagaaaaacacccaagaggacaacacccaccaacatacacgtcaccgcc 32863336  T
Q  393 taaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactca 462  Q
    |||||| || |||| ||| ||||||| || |||||||||||||||   || ||| ||||||||| |||||    
T  32863337 taaaacagaatcctccacgaaaacgaccattgtaaacacgatatctcgcaccactcatcgtcacaactca 32863406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 231 - 513
Target Start/End: Original strand, 10785088 - 10785370
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 328  Q
    |||| ||||||| ||| ||||| || |||||||||||||||||| |||||  ||  || |  | |||||||||||||  ||||||| | || ||||||||    
T  10785088 aacatcaaatttcatttaacaaccagatccctgctcaagacgaatagagacgggtaaaactgagaatacaaactaaaaacgccgtacaaagtcggaacac 10785187  T
Q  329 ccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaa 428  Q
    || || ||||||||| ||||| |||||  |||||||||||| || ||||||| |  | | | | |||||| ||||||||||| |||||||   ||| |||    
T  10785188 ccaaatataaacaccttaaaaaacacccttgaggacaacacccatcaaaatacatgttatcacttaaaacagactccttcacgaaaacgacatctgaaaa 10785287  T
Q  429 cacgatatccaacatcacccatcgtcactactca-ccaccaacgaacacccctcaaaattaaaactcccagtcctcaacaccaaag 513  Q
     ||||||||||||  ||||||||||||||||||| ||  |||  |||||||||||||| | |||||| |||||||| | |||||||    
T  10785288 aacgatatccaac--cacccatcgtcactactcatcccgcaagaaacacccctcaaaaat-aaactctcagtcctcgataccaaag 10785370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 231 - 349
Target Start/End: Original strand, 9312967 - 9313087
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 328  Q
    |||| |||||||||||||||||  | ||| |||||||||||||||||||| |||  || |  | ||||||| | ||||||| ||||||||||||||||||    
T  9312967 aacaacaaattttattaaacaacgagatctctgctcaagacgaacagagaccggtgaaacttataatacaatcaaaaggcgtcgtatataggcggaacac 9313066  T
Q  329 ccgaaaataaacaccctaaaa 349  Q
    |||||||||||||||||||||    
T  9313067 ccgaaaataaacaccctaaaa 9313087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 231 - 345
Target Start/End: Original strand, 376434 - 376549
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 328  Q
    |||||||||||||||||| ||  ||| |||||||||||||||||||||||  |  ||| || | |||||||| |||||||||||||||||||| ||||||    
T  376434 aacagcaaattttattaaccac-cacgtccctgctcaagacgaacagagacggatgaaacagagaatacaaagtaaaggcgccgtatataggcagaacac 376532  T
Q  329 ccgaaaataaacaccct 345  Q
    | |||||||||||||||    
T  376533 ctgaaaataaacaccct 376549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 248 - 378
Target Start/End: Complemental strand, 52278717 - 52278589
Alignment:
Q  248 aacaatcacatccctgctcaagacgaacagaga-tcggaatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacacccta 346  Q
    ||||| || |||||||||||||||||||||||| |  ||| || | ||||||| || |||||||| ||||||||||||||||| ||||||||||| |||     
T  52278717 aacaaccagatccctgctcaagacgaacagagactgtgaaacagagaatacaagct-aaggcgccatatataggcggaacacctgaaaataaaca-cctt 52278620  T
Q  347 aaagacacctctgaggacaacactcaccaaaa 378  Q
    ||||||||| | ||||||||||| ||||||||    
T  52278619 aaagacaccac-gaggacaacacccaccaaaa 52278589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 231 - 355
Target Start/End: Complemental strand, 27905885 - 27905760
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 328  Q
    |||| |||| |||||||||||| || |||||||||||||| ||| ||||| ||  |||||| | | ||||||||| ||||| |||||||||| ||||||     
T  27905885 aacaacaaaatttattaaacaaccagatccctgctcaagaagaatagagaccggtgaatcagagactacaaactagaggcgtcgtatataggtggaaca- 27905787  T
Q  329 ccgaaaataaacaccctaaaagacacc 355  Q
    |  |||||||||||| |||||||||||    
T  27905786 caaaaaataaacaccataaaagacacc 27905760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 260 - 355
Target Start/End: Original strand, 41126107 - 41126204
Alignment:
Q  260 cctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacc 355  Q
    ||||||||||||||||||||| ||  || ||| | ||||||||||||||||  ||||||||||  |||||||||||||||||||   |||||||||||    
T  41126107 cctgctcaagacgaacagagaccgatgattcagagaatacaaactaaaggcatcgtatataggtagaacacccgaaaataaacattataaaagacacc 41126204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 404
Target Start/End: Original strand, 2987816 - 2987924
Alignment:
Q  295 tacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgccta 394  Q
    |||||||||| |||||||||||||||||||||| ||||||| |||||||   ||| ||||| |||    |||||| |||||||||| ||||||||  |||    
T  2987816 tacaaactaa-ggcgccgtatataggcggaacatccgaaaacaaacaccaacaaaaacacccctgcaatcaacacccaccaaaataaacatcacccacta 2987914  T
Q  395 aaactgactc 404  Q
    ||||||||||    
T  2987915 aaactgactc 2987924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 263 - 353
Target Start/End: Original strand, 38544375 - 38544467
Alignment:
Q  263 gctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagaca 353  Q
    |||||||||||||| ||||| |  | ||| | |||||||||||||| || |||||||| | |||||||||||||||||||||| |||||||||    
T  38544375 gctcaagacgaacaaagatccgtgattcagagaatacaaactaaagacgtcgtatatatgtggaacacccgaaaataaacaccataaaagaca 38544467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 232 - 349
Target Start/End: Complemental strand, 49820609 - 49820489
Alignment:
Q  232 acagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacacc 329  Q
    ||||||||||||||| |||||||  ||| |||||||||||  | ||||||||  |||||| | ||||||||| |||| || | ||| |||||||||||||    
T  49820609 acagcaaattttatttaacaatctgatctctgctcaagacagatagagatcggtgaatcagagaatacaaaccaaagacgtcatatgtaggcggaacacc 49820510  T
Q  330 c-gaaaataaacaccctaaaa 349  Q
    | ||||||||||||| |||||    
T  49820509 cggaaaataaacaccataaaa 49820489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 321 - 464
Target Start/End: Original strand, 31290740 - 31290879
Alignment:
Q  321 cggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagc 420  Q
    ||||||||||||||||||||||| ||||| ||||| ||||||||||  | |  || | || |||||||| |||||| | ||||||||| | ||||||| |    
T  31290740 cggaacacccgaaaataaacaccataaaa-acacccctgaggacaattcccttcata-tacacatcaccacctaaatcagactccttcgcgaaaacgacc 31290837  T
Q  421 actgtaaacacgatatccaacatcacccatcgtcactactcacc 464  Q
    |||||||| | |||| |||||  || ||||||||||||||||||    
T  31290838 actgtaaaaatgatagccaac--catccatcgtcactactcacc 31290879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 233 - 343
Target Start/End: Original strand, 50588906 - 50589014
Alignment:
Q  233 cagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcggaatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccga 332  Q
    ||||||||||||||||| | | | ||| |||||||||||||| | |||||||  | |||  |||||||| ||||||||||||||||||||||||||| ||    
T  50588906 cagcaaattttattaaaaact-agatctctgctcaagacgaataaagatcgg--tgaaacgatacaaacgaaaggcgccgtatataggcggaacacctga 50589002  T
Q  333 a-aataaacacc 343  Q
    | ||||||||||    
T  50589003 agaataaacacc 50589014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 406
Target Start/End: Original strand, 6582968 - 6583055
Alignment:
Q  319 ggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactcct 406  Q
    ||||||||||||||||||||||||| ||||| ||||   ||| || ||||| |||||||||| || ||||| |||||||| |||||||    
T  6582968 ggcggaacacccgaaaataaacaccataaaaaacactcatgatgataacacccaccaaaatacacgtcaccacctaaaacagactcct 6583055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 231 - 349
Target Start/End: Complemental strand, 4431129 - 4431009
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggc-ggaaca 327  Q
    |||||||||||||||||||||| || ||| |||||||||||||| ||||| ||  |||    | ||||||||| |||||||||||||| |||| ||||||    
T  4431129 aacagcaaattttattaaacaaacatatctctgctcaagacgaatagagaccggtgaaattgagaatacaaacaaaaggcgccgtataaaggcgggaaca 4431030  T
Q  328 cccgaaaataaacaccctaaaa 349  Q
    ||  ||||| ||||||||||||    
T  4431029 cctaaaaat-aacaccctaaaa 4431009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 233 - 280
Target Start/End: Complemental strand, 10605147 - 10605100
Alignment:
Q  233 cagcaaattttattaaacaatcacatccctgctcaagacgaacagaga 280  Q
    |||||||||||||| |||||||| |||||||||||||||||| |||||    
T  10605147 cagcaaattttatttaacaatcagatccctgctcaagacgaatagaga 10605100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 294 - 341
Target Start/End: Complemental strand, 42374573 - 42374526
Alignment:
Q  294 atacaaactaaaggcgccgtatataggcggaacacccgaaaataaaca 341  Q
    |||||||| || |||||| |||||||||||||||||||||||||||||    
T  42374573 atacaaacaaagggcgccatatataggcggaacacccgaaaataaaca 42374526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 293 - 410
Target Start/End: Complemental strand, 46603751 - 46603636
Alignment:
Q  293 aatacaaactaaaggcgccgtatataggcggaacacccgaaaat-aaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgc 391  Q
    ||||||||| |||| ||  ||||||||||||||||||||||||| ||||| | ||||||  ||| |||| |||||||| |||||||||| | ||||||      
T  46603751 aatacaaacaaaagacgttgtatataggcggaacacccgaaaataaaacatcataaaag--acccctgaagacaacacccaccaaaata-aaatcaccat 46603655  T
Q  392 ctaaaactgactccttcac 410  Q
    ||||||| |||| ||||||    
T  46603654 ctaaaacagacttcttcac 46603636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 411 - 478
Target Start/End: Original strand, 46692627 - 46692694
Alignment:
Q  411 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacaccc 478  Q
    |||||| |||||||||||||||||||| | || | |||||||||||||||||||  ||| ||||||||    
T  46692627 aaaaacaagcactgtaaacacgatatcaaccaccgcccatcgtcactactcacccacaaagaacaccc 46692694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 411 - 509
Target Start/End: Original strand, 24449738 - 24449834
Alignment:
Q  411 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacacc 509  Q
    |||||| ||||||||||||||| |||||| || | |||||||||||||||||||  |||  |||| ||||||||| ||||||||| || || |||||||    
T  24449738 aaaaacaagcactgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaataaca-ccctcaaaa-taaaactcctagaccccaacacc 24449834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 444 - 498
Target Start/End: Complemental strand, 24659168 - 24659115
Alignment:
Q  444 cacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccag 498  Q
    ||||||||||||||||||||| ||||  |||||||||||||| ||||||||||||    
T  24659168 cacccatcgtcactactcacccccaaataacacccctcaaaa-taaaactcccag 24659115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 444 - 509
Target Start/End: Complemental strand, 7857893 - 7857829
Alignment:
Q  444 cacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacacc 509  Q
    ||||||||| ||||||||||| |||  ||||||||||||||| |||||||||||| | ||||||||    
T  7857893 cacccatcgccactactcacccccatagaacacccctcaaaa-taaaactcccagacttcaacacc 7857829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 293 - 338
Target Start/End: Complemental strand, 17033984 - 17033939
Alignment:
Q  293 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataa 338  Q
    ||||||||| ||||||| |||||||| |||||||||||||||||||    
T  17033984 aatacaaacaaaaggcgtcgtatataagcggaacacccgaaaataa 17033939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 231 - 280
Target Start/End: Original strand, 30762016 - 30762065
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagaga 280  Q
    |||||||||||||||| || ||||| |||| |||||||||||||||||||    
T  30762016 aacagcaaattttatttaaaaatcagatccttgctcaagacgaacagaga 30762065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 340
Target Start/End: Complemental strand, 37200532 - 37200485
Alignment:
Q  293 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaac 340  Q
    |||||||||||||| |  ||||||||||||||||| ||||||||||||    
T  37200532 aatacaaactaaagacatcgtatataggcggaacatccgaaaataaac 37200485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 462
Target Start/End: Original strand, 38548845 - 38548934
Alignment:
Q  371 caccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactca 462  Q
    |||||||||| |||||||| |||||||| ||||| ||||| ||| ||| ||||| ||| ||||||| ||  | |||||||||||||||||||    
T  38548845 caccaaaataaacatcaccacctaaaacagactctttcacgaaa-cgatcactgaaaa-acgatattcataaccacccatcgtcactactca 38548934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 464
Target Start/End: Original strand, 41126261 - 41126351
Alignment:
Q  374 caaaatatacatcaccgcctaaaactgactccttcacaaaaacgagc-actgtaaacacgatatccaacatcacccatcgtcactactcacc 464  Q
    ||||||| | |||||| |||||||| ||| | ||||| ||||| | | |||||||| |||||||||| || |||||||||||||||||||||    
T  41126261 caaaatacatatcaccacctaaaacagacgcattcacgaaaacaaaccactgtaaa-acgatatccatcaccacccatcgtcactactcacc 41126351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 509
Target Start/End: Original strand, 5389230 - 5389325
Alignment:
Q  411 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacacc 509  Q
    |||||| ||||| ||||||||| |||||| || | ||||||||||||||||||   ||| ||||| ||||||||| |||||||||||| || |||||||    
T  5389230 aaaaacaagcaccgtaaacacggtatccaccaccgcccatcgtcactactcacttacaa-gaaca-ccctcaaaa-taaaactcccagaccccaacacc 5389325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 477
Target Start/End: Complemental strand, 5459434 - 5459368
Alignment:
Q  411 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacc 477  Q
    |||||| | ||||||||||||| |||||| || | |||||||||||||||||||  ||| |||||||    
T  5459434 aaaaacaatcactgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaagaacacc 5459368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 38546876 - 38546930
Alignment:
Q  295 tacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaa 349  Q
    ||||||||||| | | ||||||||||||||||| ||||||||||| ||| |||||    
T  38546876 tacaaactaaatgtgtcgtatataggcggaacatccgaaaataaaaaccataaaa 38546930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 280
Target Start/End: Original strand, 7451888 - 7451937
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagaga 280  Q
    |||||||||| |||||||||||  | ||| ||||||||||||||||||||    
T  7451888 aacagcaaatattattaaacaactagatctctgctcaagacgaacagaga 7451937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 343
Target Start/End: Complemental strand, 19599031 - 19598990
Alignment:
Q  303 aaaggcgccgtatataggcggaacacccgaaaa-taaacacc 343  Q
    ||||||||||||||||||||||||||| ||||| ||||||||    
T  19599031 aaaggcgccgtatataggcggaacacctgaaaagtaaacacc 19598990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 280
Target Start/End: Complemental strand, 34159097 - 34159048
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagaga 280  Q
    |||| |||| ||||||||||||||| ||||||||||||||| || |||||    
T  34159097 aacaacaaaatttattaaacaatcagatccctgctcaagacaaatagaga 34159048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 486
Target Start/End: Original strand, 38544511 - 38544637
Alignment:
Q  358 tgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcact 457  Q
    |||||||||||  |||||||||| |||||||| |||||||| ||||| |||||   || || ||||| ||| ||||||||||  | ||| ||||||||||    
T  38544511 tgaggacaacatacaccaaaataaacatcaccacctaaaacagactctttcac-ggaatgatcactggaaa-acgatatccataaccactcatcgtcact 38544608  T
Q  458 actcaccaccaacg-aacacccctcaaaat 486  Q
    ||||| | |||||| |||||||||| ||||    
T  38544609 actcatc-ccaacgtaacacccctctaaat 38544637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 462
Target Start/End: Original strand, 24684310 - 24684350
Alignment:
Q  422 ctgtaaacacgatatccaacatcacccatcgtcactactca 462  Q
    |||||||||||||||||| || | |||||||||||||||||    
T  24684310 ctgtaaacacgatatccaccaccgcccatcgtcactactca 24684350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 1e-57; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 231 - 513
Target Start/End: Original strand, 10173206 - 10173488
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 328  Q
    |||| ||||||||| | ||||| || || |||||||||||||||||||||||||  || || | ||||||||||||| |||  |||||||||||||||||    
T  10173206 aacatcaaattttacttaacaaccagattcctgctcaagacgaacagagatcggtgaaacatataatacaaactaaaagcgttgtatataggcggaacac 10173305  T
Q  329 ccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaa 428  Q
    | ||||||||||||||||||||| |||||||||||||| || || ||||||| |  |||| ||||||||| |||  |||||  |||||||  ||||||||    
T  10173306 ctgaaaataaacaccctaaaagatacctctgaggacaatacccatcaaaatacatgtcacggcctaaaacagacgtcttcatgaaaacgactactgtaaa 10173405  T
Q  429 cacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacaccaaag 513  Q
     ||||||| ||||| ||| ||||||||||||||||| |||| ||| || |||||||||| |||||| ||||||||||||||||||    
T  10173406 aacgatatacaacaccactcatcgtcactactcacc-ccaaagaatactcctcaaaatt-aaactctcagtcctcaacaccaaag 10173488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 231 - 463
Target Start/End: Complemental strand, 7696415 - 7696184
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 328  Q
    |||||||||||||||| ||||| || |||||||||||||| ||||||||| ||  |||    | ||||||||| |||||  |||||||||||||||||||    
T  7696415 aacagcaaattttattgaacaaccaaatccctgctcaagatgaacagagaccgatgaaattgagaatacaaacaaaaggaaccgtatataggcggaacac 7696316  T
Q  329 ccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaa 428  Q
    || |||||||||||| ||||| ||||| | ||||||||||| |||||||||| |||||||| |||||||   |||||||||| ||||||| || ||||||    
T  7696315 ccaaaaataaacaccttaaaa-acacccccgaggacaacacccaccaaaatacacatcaccacctaaaataaactccttcacgaaaacgaccaatgtaaa 7696217  T
Q  429 cacgatatccaacatcacccatcgtcactactcac 463  Q
     | ||||| ||||  ||| ||||||||||||||||    
T  7696216 aatgatattcaac--cactcatcgtcactactcac 7696184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 231 - 438
Target Start/End: Complemental strand, 4975199 - 4974990
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagaga-tcg-gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 328  Q
    |||| ||||||||||| ||| ||||  || |||||||||||||||||||| | | ||| | || ||||||||||||||||| ||||||||||| ||||||    
T  4975199 aacaacaaattttatttaaccatcaggtctctgctcaagacgaacagagactagtgaaactaagaatacaaactaaaggcgtcgtatataggctgaacac 4975100  T
Q  329 ccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaa 428  Q
    ||||||||||||||||| ||| ||| |  |||||| ||||| ||||||| || ||| |||| |||||||| |||| |||||| ||||||| |||||||||    
T  4975099 ccgaaaataaacaccctgaaaaacatccttgaggataacacccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaa 4975000  T
Q  429 cacgatatcc 438  Q
     |||||||||    
T  4974999 aacgatatcc 4974990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 231 - 438
Target Start/End: Complemental strand, 4993107 - 4992898
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagaga-tcg-gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 328  Q
    |||| ||||||||||| ||| ||||  || |||||||||||||||||||| | | ||| | || ||||||||||||||||| ||||||||||| ||||||    
T  4993107 aacaacaaattttatttaaccatcaggtctctgctcaagacgaacagagactagtgaaactaagaatacaaactaaaggcgtcgtatataggctgaacac 4993008  T
Q  329 ccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaa 428  Q
    ||||||||||||||||| ||| ||| |  |||||| ||||| ||||||| || ||| |||| |||||||| |||| |||||| ||||||| |||||||||    
T  4993007 ccgaaaataaacaccctgaaaaacatccttgaggataacacccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaa 4992908  T
Q  429 cacgatatcc 438  Q
     |||||||||    
T  4992907 aacgatatcc 4992898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 293 - 511
Target Start/End: Complemental strand, 12343195 - 12342992
Alignment:
Q  293 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcc 392  Q
    |||||||||||||| || | || | ||||||||||||||||||||||||||             ||||||||||||  || ||||||| || ||||| ||    
T  12343195 aatacaaactaaagacgtcttacaaaggcggaacacccgaaaataaacacc-------------ctgaggacaacatccatcaaaatacacgtcaccacc 12343109  T
Q  393 taaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactca-ccaccaacgaacacccctcaaaattaaaa 491  Q
    |||||| ||||||||||| ||||||| | ||||||| ||||||||||||  ||| ||||||||||||||| || ||||  |||||||||||||| | |||    
T  12343108 taaaacagactccttcacgaaaacgacctctgtaaaaacgatatccaac--cactcatcgtcactactcaccccccaagaaacacccctcaaaaat-aaa 12343012  T
Q  492 ctcccagtcctcaacaccaa 511  Q
    ||||||||||||||||||||    
T  12343011 ctcccagtcctcaacaccaa 12342992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 237 - 469
Target Start/End: Complemental strand, 34230648 - 34230417
Alignment:
Q  237 aaattttattaaacaatcacatccctgctcaagacgaacagagatcgga-atcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaaa 335  Q
    |||| ||||||||||| || ||| ||||||||||||||||||||||||  | |    ||||||||| |||| ||||||||||||||||||||||  ||||    
T  34230648 aaatattattaaacaaccatatctctgctcaagacgaacagagatcggtgaactgcgaatacaaacaaaagacgccgtatataggcggaacaccaaaaaa 34230549  T
Q  336 taaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgata 435  Q
    |||||| | ||||| ||||| || || ||||||  |||||||||| || |||||  || |||| ||||| | ||| ||||||| |||| |||| ||||||    
T  34230548 taaacatcgtaaaa-acaccccttagaacaacatccaccaaaatacacgtcaccatct-aaacagactcttccacgaaaacgaccactataaaaacgata 34230451  T
Q  436 tccaacatcacccatcgtcactactcaccaccaa 469  Q
    ||||||| ||||| |||  |||||||||| ||||    
T  34230450 tccaacaacacccgtcgcaactactcacctccaa 34230417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 231 - 349
Target Start/End: Complemental strand, 4472397 - 4472277
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 328  Q
    |||||||||||||||| |||||||  ||||| | |||||| |||||||| ||||  ||||| | ||||||||||||||||| ||||||||| |||||||     
T  4472397 aacagcaaattttattcaacaatctgatccccgttcaagatgaacagagttcggtgaatcagagaatacaaactaaaggcgtcgtatatagacggaacat 4472298  T
Q  329 ccgaaaataaacaccctaaaa 349  Q
    ||||||||||||||| |||||    
T  4472297 ccgaaaataaacaccataaaa 4472277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 264 - 369
Target Start/End: Complemental strand, 13337671 - 13337565
Alignment:
Q  264 ctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgag 361  Q
    ||||||||||||||||| |||  || || | ||||||||| ||||||| |||||||||| |||||||| ||||||||||||||||||| ||||| |||||    
T  13337671 ctcaagacgaacagagaccggtgaaacagagaatacaaacaaaaggcgtcgtatataggtggaacacctgaaaataaacaccctaaaa-acacccctgag 13337573  T
Q  362 gacaacac 369  Q
    ||||||||    
T  13337572 gacaacac 13337565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 382 - 509
Target Start/End: Complemental strand, 387476 - 387351
Alignment:
Q  382 acatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctc 481  Q
    |||||||| |||||||| ||||||||||||||||| |||| ||||||||| | || || || | ||||||||||||| ||||| |||| ||||| |||||    
T  387476 acatcaccacctaaaacagactccttcacaaaaacaagcattgtaaacacaaaattcaccaccgcccatcgtcactattcacccccaaagaaca-ccctc 387378  T
Q  482 aaaattaaaactcccagtcctcaacacc 509  Q
    |||| |||||||||||| || |||||||    
T  387377 aaaa-taaaactcccagaccccaacacc 387351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 231 - 343
Target Start/End: Original strand, 25504516 - 25504629
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 328  Q
    ||||||||||||||||||| ||||| ||||||||||||||| |||||| | |||  | ||| | ||||||||| ||||||||||||||||| || |||||    
T  25504516 aacagcaaattttattaaa-aatcagatccctgctcaagacaaacagaaaccggtgattcagagaatacaaacaaaaggcgccgtatatagacgaaacac 25504614  T
Q  329 ccgaaaataaacacc 343  Q
    || ||||||||||||    
T  25504615 ccaaaaataaacacc 25504629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 311 - 513
Target Start/End: Original strand, 37770359 - 37770553
Alignment:
Q  311 cgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcac 410  Q
    ||||||||||||||||||||||||||||||||||||||| |||||  |||||| | ||| |||||||||  || ||||| |||||||| |||||||||||    
T  37770359 cgtatataggcggaacacccgaaaataaacaccctaaaa-acacc-atgaggataccacccaccaaaatccacgtcaccacctaaaacagactccttcac 37770456  T
Q  411 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaaca---cccctcaaaattaaaactcccagtcctcaaca 507  Q
     ||||| | |||| ||        |||||||| ||||| |||||||||||| || |||| ||| |   |||||||||||| |||||| ||| ||| ||||    
T  37770457 gaaaaccaccactata--------atccaacaccacccgtcgtcactactcgcccccaaagaaaaaaccccctcaaaatt-aaactcacagacctgaaca 37770547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 374 - 514
Target Start/End: Original strand, 16952154 - 16952294
Alignment:
Q  374 caaaatatacatcaccgcctaaaactgactccttcacaaaaacgagc-actgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacga 472  Q
    ||||||| |||||||| | |||||| ||| ||||||| ||||| | | |||| ||| | ||||| || || ||| ||||||||||||||||| |||| ||    
T  16952154 caaaataaacatcaccacttaaaacagacgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactactcacccccaaaga 16952253  T
Q  473 acacccctcaaaattaaaactcccagtcctcaacaccaaagt 514  Q
    ||||||||| ||| | ||||||||||||||||||||||||||    
T  16952254 acacccctctaaa-tgaaactcccagtcctcaacaccaaagt 16952294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 374 - 514
Target Start/End: Original strand, 17022819 - 17022959
Alignment:
Q  374 caaaatatacatcaccgcctaaaactgactccttcacaaaaacgagc-actgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacga 472  Q
    ||||||| |||||||| | |||||| ||| ||||||| ||||| | | |||| ||| | ||||| || || ||| ||||||||||||||||| |||| ||    
T  17022819 caaaataaacatcaccacttaaaacagacgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactactcacccccaaaga 17022918  T
Q  473 acacccctcaaaattaaaactcccagtcctcaacaccaaagt 514  Q
    ||||||||| ||| | ||||||||||||||||||||||||||    
T  17022919 acacccctctaaa-tgaaactcccagtcctcaacaccaaagt 17022959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 374 - 514
Target Start/End: Original strand, 17060125 - 17060265
Alignment:
Q  374 caaaatatacatcaccgcctaaaactgactccttcacaaaaacgagc-actgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacga 472  Q
    ||||||| |||||||| | |||||| ||| ||||||| ||||| | | |||| ||| | ||||| || || ||| ||||||||||||||||| |||| ||    
T  17060125 caaaataaacatcaccacttaaaacagacgccttcacgaaaacaaactactgcaaaaaagatattcatcaccactcatcgtcactactcacccccaaaga 17060224  T
Q  473 acacccctcaaaattaaaactcccagtcctcaacaccaaagt 514  Q
    ||||||||| ||| | ||||||||||||||||||||||||||    
T  17060225 acacccctctaaa-tgaaactcccagtcctcaacaccaaagt 17060265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 386 - 509
Target Start/End: Complemental strand, 7460974 - 7460852
Alignment:
Q  386 caccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaa 485  Q
    |||||||||| || ||| |||| ||| |||| | |||||||||||| |||||||  | ||| ||||||||||||||| | |||| |||||||||||||||    
T  7460974 caccgcctaagacggacaccttaacagaaacaaacactgtaaacacaatatccacaaccacacatcgtcactactcaaccccaaagaacacccctcaaaa 7460875  T
Q  486 ttaaaactcccagtcctcaacacc 509  Q
     |||||||||||| | ||||||||    
T  7460874 -taaaactcccagacttcaacacc 7460852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 261 - 340
Target Start/End: Complemental strand, 27740412 - 27740331
Alignment:
Q  261 ctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaac 340  Q
    |||||||||||||||| ||||||  || ||| | ||||||||||||||||| |||||||||| |||||||||||||||||||    
T  27740412 ctgctcaagacgaacaaagatcgatgattcagataatacaaactaaaggcgtcgtatataggtggaacacccgaaaataaac 27740331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 293 - 455
Target Start/End: Original strand, 41113431 - 41113590
Alignment:
Q  293 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcc 392  Q
    |||||||||||||| |   |||||||||||||||| ||||||||||| ||||||||| |||||  |||||    ||| |||||||||| || | ||  ||    
T  41113431 aatacaaactaaagacattgtatataggcggaacatccgaaaataaataccctaaaaaacacccatgagg---gcacccaccaaaataaacgttactacc 41113527  T
Q  393 taaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtca 455  Q
    |||||| ||||||||||| |||||||  | |||| | ||||||||| ||| ||| ||||||||    
T  41113528 taaaacagactccttcacgaaaacgactattgtacaaacgatatcccacagcactcatcgtca 41113590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 293 - 340
Target Start/End: Original strand, 22884805 - 22884852
Alignment:
Q  293 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaac 340  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  22884805 aatacaaactaaaggcgtcgtatataggcggaacacccgaaaataaac 22884852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 231 - 339
Target Start/End: Original strand, 33788253 - 33788362
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 328  Q
    |||||||||||||||| || || || ||| ||||| |||||||||||||| |||  |  |  | |||||||||||||||||||||||||| |||||||||    
T  33788253 aacagcaaattttatttaa-aaccaaatctctgctaaagacgaacagagaccggtgataccgagaatacaaactaaaggcgccgtatatatgcggaacac 33788351  T
Q  329 ccgaaaataaa 339  Q
    |||||||||||    
T  33788352 ccgaaaataaa 33788362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 411 - 509
Target Start/End: Original strand, 39338674 - 39338769
Alignment:
Q  411 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacacc 509  Q
    |||||| ||||||||||||| | |||||| |||| |||||||||||||||||||  ||| ||||| ||||||||| |||||||||||| ||||||||||    
T  39338674 aaaaacaagcactgtaaacaag-tatccaccatcgcccatcgtcactactcacccacaaagaaca-ccctcaaaa-taaaactcccagacctcaacacc 39338769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 231 - 337
Target Start/End: Complemental strand, 29487553 - 29487447
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 328  Q
    |||| |||||||||||||| || || |||||||||||||| ||||||||| |||  | ||| | ||||||| ||||||| ||||||||||||||||||||    
T  29487553 aacaacaaattttattaaa-aaccagatccctgctcaagatgaacagagaccggtgattcatagaatacaa-ctaaaggagccgtatataggcggaacac 29487456  T
Q  329 ccgaaaata 337  Q
    | |||||||    
T  29487455 ctgaaaata 29487447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 343
Target Start/End: Complemental strand, 15361172 - 15361063
Alignment:
Q  236 caaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacaccc-ga 332  Q
    |||||||||||||| ||||| |||||||||||||||||| |||||  |  ||| || | ||||||||| ||||||||||||||||| || |||||||  |    
T  15361172 caaattttattaaa-aatcaaatccctgctcaagacgaatagagactggtgaaacagataatacaaacgaaaggcgccgtatatagacgaaacacccaaa 15361074  T
Q  333 aaataaacacc 343  Q
    |||||||||||    
T  15361073 aaataaacacc 15361063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 464
Target Start/End: Original strand, 29139642 - 29139813
Alignment:
Q  294 atacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccg--- 390  Q
    |||||||  ||||||| |||||||  | ||||||| |||||||||| ||| ||||| ||||||||||  ||||||  |||||||||| || ||||||       
T  29139642 atacaaataaaaggcgtcgtatattagtggaacactcgaaaataaataccttaaaa-acacctctgaaaacaacatccaccaaaatacacgtcaccgtca 29139740  T
Q  391 cctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcacc 464  Q
    |||||||  ||||| ||||||||||| | ||||  ||| ||||||| ||||||||||  | |||||||||||||    
T  29139741 cctaaaagagactctttcacaaaaacaaccactaaaaa-acgatattcaacatcaccagttgtcactactcacc 29139813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 231 - 414
Target Start/End: Complemental strand, 29997399 - 29997215
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 328  Q
    |||| |||||||||||||||||||   || ||| | |||||||||||||| ||  |||    |||||| |||| |||||| ||||||||| ||||||||     
T  29997399 aacaacaaattttattaaacaatctggtctctggtaaagacgaacagagaccgatgaaattgaaaataaaaacaaaaggcaccgtatataagcggaacat 29997300  T
Q  329 ccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaa 414  Q
    ||||||||||||| |||||||  || | |||||||| || |  || ||||||||| |||||  ||||||| || ||||||| ||||    
T  29997299 ccgaaaataaacatcctaaaa-tcatccctgaggaccactcctactaaaatatacgtcaccatctaaaacagattccttcataaaa 29997215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 293 - 353
Target Start/End: Complemental strand, 2063269 - 2063208
Alignment:
Q  293 aatacaaactaaaggcgccgtatataggcggaacacccg-aaaataaacaccctaaaagaca 353  Q
    ||||||||| ||||| |||||||||||||| |||||||| |||||||||||| |||||||||    
T  2063269 aatacaaacgaaaggtgccgtatataggcgaaacacccgaaaaataaacaccataaaagaca 2063208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 382 - 485
Target Start/End: Complemental strand, 5254553 - 5254452
Alignment:
Q  382 acatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctc 481  Q
    |||||||| ||||| || ||| |||| ||| |||| | ||||||||||||  ||||||  | ||||||||||||||||||||  |||| |||||||||||    
T  5254553 acatcaccacctaagacggacaccttaacagaaacaaacactgtaaacacagtatccacaaccacccatcgtcactactcac--ccaaagaacacccctc 5254456  T
Q  482 aaaa 485  Q
    ||||    
T  5254455 aaaa 5254452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 386 - 509
Target Start/End: Original strand, 14106305 - 14106427
Alignment:
Q  386 caccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaa 485  Q
    |||| ||||| || ||| |||| ||| |||| | || |||||||||  ||||||  | ||| ||||||||||||||||| |||| |||||||||||||||    
T  14106305 caccacctaagacggacaccttaacagaaacaaacattgtaaacacagtatccacaaccactcatcgtcactactcacccccaaagaacacccctcaaaa 14106404  T
Q  486 ttaaaactcccagtcctcaacacc 509  Q
     |||||||| ||| | ||||||||    
T  14106405 -taaaactctcagacttcaacacc 14106427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 418 - 509
Target Start/End: Original strand, 17116694 - 17116784
Alignment:
Q  418 agcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacacc 509  Q
    ||||||||||||||| |||||| || | |||||||||| ||||||||  ||| ||||| |||||||||| ||||||| ||| || |||||||    
T  17116694 agcactgtaaacacggtatccaccaccgcccatcgtcattactcacccacaaagaaca-ccctcaaaataaaaactctcagaccccaacacc 17116784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 391 - 509
Target Start/End: Complemental strand, 7874583 - 7874467
Alignment:
Q  391 cctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaa 490  Q
    ||||| || ||| |||| ||| |||| | ||||||||||||  ||||||  | ||||||||||||||||||||| |||| ||||| ||||||||| ||||    
T  7874583 cctaagacggacaccttgacagaaacaaacactgtaaacacagtatccacaaccacccatcgtcactactcacc-ccaaagaacatccctcaaaa-taaa 7874486  T
Q  491 actcccagtcctcaacacc 509  Q
    ||||| || | ||||||||    
T  7874485 actccaagacttcaacacc 7874467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 369
Target Start/End: Original strand, 41086513 - 41086570
Alignment:
Q  311 cgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacac 369  Q
    |||||||||||| |||||||||||||||| ||||||||| ||||| |||| ||||||||    
T  41086513 cgtatataggcgaaacacccgaaaataaataccctaaaa-acacccctgaagacaacac 41086570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 442 - 517
Target Start/End: Complemental strand, 14405441 - 14405366
Alignment:
Q  442 atcacccatcgtcactactcaccacc-aacgaacacccctcaaaattaaaactcccagtcctcaacaccaaagtcga 517  Q
    ||||||||| ||||||||||||| || || ||||| ||||||||| |||||||||||| | |||||||| |||||||    
T  14405441 atcacccattgtcactactcacccccaaaagaacatccctcaaaa-taaaactcccagacttcaacacccaagtcga 14405366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 461
Target Start/End: Original strand, 41086572 - 41086648
Alignment:
Q  385 tcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactc 461  Q
    ||||| |||||||| ||| |||| || ||| ||| |||| |||| ||||||||||| | ||||||||||||||||||    
T  41086572 tcaccacctaaaacagaccccttaacgaaagcgaccactctaaaaacgatatccaataccacccatcgtcactactc 41086648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 478
Target Start/End: Complemental strand, 10524373 - 10524306
Alignment:
Q  411 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacaccc 478  Q
    |||||| ||||| ||||||||| |||||| || | |||||||||||||||||||  ||| ||||||||    
T  10524373 aaaaacaagcaccgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaagaacaccc 10524306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 293 - 343
Target Start/End: Original strand, 24165867 - 24165917
Alignment:
Q  293 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacacc 343  Q
    |||||| ||||||| | | |||||||||||||||||||||||| |||||||    
T  24165867 aatacagactaaagacactgtatataggcggaacacccgaaaacaaacacc 24165917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 354
Target Start/End: Original strand, 16952035 - 16952096
Alignment:
Q  293 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacac 354  Q
    ||||||||||| || || ||||||||||| ||||| || |||||||||| | ||||||||||    
T  16952035 aatacaaactatagacgtcgtatataggcagaacatccaaaaataaacatcataaaagacac 16952096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 354
Target Start/End: Original strand, 17022700 - 17022761
Alignment:
Q  293 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacac 354  Q
    ||||||||||| || || ||||||||||| ||||| || |||||||||| | ||||||||||    
T  17022700 aatacaaactatagacgtcgtatataggcagaacatccaaaaataaacatcataaaagacac 17022761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 282
Target Start/End: Complemental strand, 40470840 - 40470793
Alignment:
Q  234 agcaaattttattaaacaatcacatccctgctcaagacgaacagagatc 282  Q
    |||||||||||||||| ||||| || | |||||||||||||||||||||    
T  40470840 agcaaattttattaaa-aatcagattcttgctcaagacgaacagagatc 40470793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 5e-45; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 293 - 514
Target Start/End: Original strand, 10248256 - 10248479
Alignment:
Q  293 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaa-caccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgc 391  Q
    ||||||| ||||||||| |||||||||||||||||||| |||| ||| |||| ||||| |||||  |||||||||||| | |||||||| || ||||| |    
T  10248256 aatacaacctaaaggcgtcgtatataggcggaacaccctaaaaaaaaacaccttaaaaaacacccttgaggacaacacccgccaaaatacacgtcaccac 10248355  T
Q  392 ctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactca-ccaccaacg-aacacccctcaaaattaa 489  Q
    |||||||  |||||||||| ||||||| ||||||||| |||| |||| ||| ||||||||||||||||||| || |||||| ||||||| |||||||| |    
T  10248356 ctaaaacaaactccttcacgaaaacgaccactgtaaaaacgacatcccacaacacccatcgtcactactcaccccccaacgaaacacccgtcaaaatt-a 10248454  T
Q  490 aactcccagtcctcaacaccaaagt 514  Q
    |||||  ||||||||||||||||||    
T  10248455 aactctaagtcctcaacaccaaagt 10248479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 231 - 469
Target Start/End: Original strand, 12197702 - 12197941
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 328  Q
    ||||| |||||||||| |||||  | |||  ||||||||||||| |||||||||  ||||| | ||||||||||||||||| ||| ||||||||||||||    
T  12197702 aacagtaaattttatttaacaacgagatctatgctcaagacgaatagagatcggtgaatcagagaatacaaactaaaggcgtcgtctataggcggaacac 12197801  T
Q  329 ccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaa 428  Q
      ||||||||||||||||||||||||||||| ||||||||| ||| |||||| || ||||| |||| ||| ||| ||||||  || |||| ||||  |||    
T  12197802 gggaaaataaacaccctaaaagacacctctggggacaacac-cacaaaaatacacgtcaccacctacaacagacgccttcatgaacacgaccactaaaaa 12197900  T
Q  429 cacgatatccaacatcacccatcgtcactactcaccaccaa 469  Q
     |||||||||| || ||||| ||||||||||||||| ||||    
T  12197901 aacgatatccagcaccacccgtcgtcactactcacccccaa 12197941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 231 - 469
Target Start/End: Original strand, 12442130 - 12442369
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 328  Q
    ||||| |||||||||| |||||  | |||  ||||||||||||| |||||||||  ||||| | ||||||||||||||||| ||| ||||||||||||||    
T  12442130 aacagtaaattttatttaacaacgagatctatgctcaagacgaatagagatcggtgaatcagagaatacaaactaaaggcgtcgtctataggcggaacac 12442229  T
Q  329 ccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaa 428  Q
      ||||||||||||||||||||||||||||| ||||||||| ||| |||||| || ||||| |||| ||| ||| ||||||  || |||| ||||  |||    
T  12442230 gggaaaataaacaccctaaaagacacctctggggacaacac-cacaaaaatacacgtcaccacctacaacagacgccttcatgaacacgaccactaaaaa 12442328  T
Q  429 cacgatatccaacatcacccatcgtcactactcaccaccaa 469  Q
     |||||||||| || ||||| ||||||||||||||| ||||    
T  12442329 aacgatatccagcaccacccgtcgtcactactcacccccaa 12442369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 231 - 469
Target Start/End: Original strand, 17656363 - 17656603
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 328  Q
    |||||||||||||||||||||||||  |||||||||| ||  || ||||| |||  ||    || ||| |||| ||||||| ||||||||| ||||||||    
T  17656363 aacagcaaattttattaaacaatcaggtccctgctcatgagcaatagagaccggtgaaattgaacatataaacaaaaggcgtcgtatatagacggaacac 17656462  T
Q  329 ccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttc-acaaaaacgagcactgtaa 427  Q
    |||||||| |||||||||||| |||||  |||||||||||| |||||||||  || |||||  ||||||| ||||||||| | |||||||| ||||| ||    
T  17656463 ccgaaaattaacaccctaaaa-acacccttgaggacaacacccaccaaaattcacgtcaccatctaaaacagactccttcaagaaaaacgaccactgcaa 17656561  T
Q  428 acacgatatccaacatcacccatcgtcactactcaccaccaa 469  Q
    | ||||||||||||| | | ||| ||||||||||||| ||||    
T  17656562 aaacgatatccaacaccgctcattgtcactactcacccccaa 17656603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 295 - 460
Target Start/End: Original strand, 8862314 - 8862481
Alignment:
Q  295 tacaaactaaaggcgccgtatataggcggaacacccgaaaa-taaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcct 393  Q
    ||||||| ||||||||||||||||| ||||||| ||||||| |||||||| ||||| ||||| |  |||||||||| ||| |||||| || ||||| |||    
T  8862314 tacaaacaaaaggcgccgtatatagacggaacatccgaaaaataaacaccataaaaaacaccccgaaggacaacacccacaaaaatacacgtcaccacct 8862413  T
Q  394 aaaactgactccttcacaaaaacgagcactgtaaacacgatatcc-aacatcacccatcgtcactact 460  Q
    ||||||||||| | ||| | ||| | || |||||| || |||||| |||| ||| | |||||||||||    
T  8862414 aaaactgactcttacacgagaacaaccattgtaaaaacaatatccaaacaccacacgtcgtcactact 8862481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 338 - 473
Target Start/End: Original strand, 43312375 - 43312509
Alignment:
Q  338 aacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatc 437  Q
    |||| ||||||| ||||| ||||  ||||||| || ||||||| |  ||||| |||||| | ||||||| ||||||||||| ||||||||| ||||||||    
T  43312375 aacatcctaaaaaacaccgctgaa-acaacacccatcaaaatacatgtcaccacctaaatcagactcctacacaaaaacgaccactgtaaaaacgatatc 43312473  T
Q  438 caacatcacccatcgtcactactcaccaccaacgaa 473  Q
    | ||| ||  |||||||||||||| || ||||||||    
T  43312474 ccacaccatacatcgtcactactcgcccccaacgaa 43312509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 295 - 404
Target Start/End: Original strand, 41790961 - 41791070
Alignment:
Q  295 tacaaactaaaggcgccgtatataggcggaacacccgaaaataaacacccta-aaagacacctctgaggacaacactcaccaaaatatacatcaccgcct 393  Q
    ||||||||||||  | |||||||||||||||||||| |||||||| |||| | ||||||||   | |||||||| | |||||||||| |||||||| |||    
T  41790961 tacaaactaaagatgtcgtatataggcggaacacccaaaaataaa-acccaataaagacactcataaggacaacccccaccaaaataaacatcaccccct 41791059  T
Q  394 aaaactgactc 404  Q
    |||||||||||    
T  41791060 aaaactgactc 41791070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 382 - 509
Target Start/End: Complemental strand, 20138726 - 20138603
Alignment:
Q  382 acatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctc 481  Q
    |||||||| |||||||| ||||||   | |||| | ||||||||||||||| |||||| || |  ||||||||||||||||||  ||| ||||| |||||    
T  20138726 acatcaccacctaaaacagactcc---aaaaaatcaagcactgtaaacacggtatccaccaccgtccatcgtcactactcacctacaaagaaca-ccctc 20138631  T
Q  482 aaaattaaaactcccagtcctcaacacc 509  Q
    |||| |||||||||||| || |||||||    
T  20138630 aaaaataaaactcccagaccccaacacc 20138603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 233 - 323
Target Start/End: Original strand, 8843743 - 8843833
Alignment:
Q  233 cagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcgg 323  Q
    ||||||||||||||||| ||||| |||||| ||||||||||||||||| ||  ||| | | |||||||||| ||| |||||||||||||||||    
T  8843743 cagcaaattttattaaa-aatcaaatcccttctcaagacgaacagagaccggtgaaac-agaaatacaaacgaaatgcgccgtatataggcgg 8843833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 343
Target Start/End: Original strand, 30235809 - 30235857
Alignment:
Q  295 tacaaactaaaggcgccgtatataggcggaacacccgaaaataaacacc 343  Q
    |||||||||||||| |||||||||||||||||| ||||||| |||||||    
T  30235809 tacaaactaaaggctccgtatataggcggaacatccgaaaacaaacacc 30235857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 293 - 340
Target Start/End: Original strand, 17720398 - 17720444
Alignment:
Q  293 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaac 340  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||    
T  17720398 aatacaaactaaaggcgccgtatataggcagaacaccc-aaaataaac 17720444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 418 - 497
Target Start/End: Original strand, 31207177 - 31207254
Alignment:
Q  418 agcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactccca 497  Q
    ||||||||||||||  |||||| |||| |||||||||||||||||||  ||| ||||| ||||||||| |||||||||||    
T  31207177 agcactgtaaacacagtatccaccatcgcccatcgtcactactcacccacaaagaaca-ccctcaaaa-taaaactccca 31207254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 340
Target Start/End: Original strand, 5214941 - 5215044
Alignment:
Q  237 aaattttattaaacaatcacatccctgctcaagacgaacagagatcggaat--caaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaa 334  Q
    ||||||||||||| ||||| ||||||||  |||||||||||||| ||   |  || ||| |||||||||| ||||||||||||||||| |||||||||||    
T  5214941 aaattttattaaa-aatcagatccctgcataagacgaacagagaccgatgttacagaaagtacaaactaa-ggcgccgtatataggcgaaacacccgaaa 5215038  T
Q  335 ataaac 340  Q
    | ||||    
T  5215039 acaaac 5215044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 406
Target Start/End: Original strand, 30235889 - 30235935
Alignment:
Q  360 aggacaacactcaccaaaatatacatcaccgcctaaaactgactcct 406  Q
    |||||||||| |||||||||| |||||||| ||||||||||||||||    
T  30235889 aggacaacacccaccaaaataaacatcaccccctaaaactgactcct 30235935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 274
Target Start/End: Original strand, 2613174 - 2613217
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaa 274  Q
    |||||||||||||||| |||||||| |||||| |||||||||||    
T  2613174 aacagcaaattttatttaacaatcagatccctactcaagacgaa 2613217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 340
Target Start/End: Original strand, 9831694 - 9831741
Alignment:
Q  293 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaac 340  Q
    |||||||||||||| || ||||||||||| || |||||||||||||||    
T  9831694 aatacaaactaaagacgtcgtatataggccgaccacccgaaaataaac 9831741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 420 - 478
Target Start/End: Complemental strand, 9519764 - 9519706
Alignment:
Q  420 cactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacaccc 478  Q
    ||||||||||||| |||||| || | |||||||||||||||||||  ||| ||||||||    
T  9519764 cactgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaagaacaccc 9519706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 332 - 438
Target Start/End: Original strand, 22325826 - 22325931
Alignment:
Q  332 aaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacac 431  Q
    |||||||||| ||||||| |||||  | | ||| |||| ||||||||||||  |||||   |||||| |||||||| |||||||||| || |||||| ||    
T  22325826 aaaataaacatcctaaaa-acacccataatgacgacacccaccaaaatataggtcaccatataaaacagactccttaacaaaaacgaccattgtaaaaac 22325924  T
Q  432 gatatcc 438  Q
    |||||||    
T  22325925 gatatcc 22325931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 485
Target Start/End: Original strand, 35816066 - 35816128
Alignment:
Q  423 tgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaa 485  Q
    |||||||||  ||||||  | |||||||| |||||||||||| |||| |||||||||||||||    
T  35816066 tgtaaacacagtatccacaaccacccatcatcactactcacccccaaagaacacccctcaaaa 35816128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 509
Target Start/End: Original strand, 41893210 - 41893306
Alignment:
Q  411 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacacc 509  Q
    |||||| || |||||||||||| |||||| || |  ||||||||||||||||||  ||| ||||| |||| |||| || ||||||||| ||||||||||    
T  41893210 aaaaacaagaactgtaaacacggtatccaccaccgaccatcgtcactactcacccacaaagaaca-ccctgaaaa-tagaactcccagacctcaacacc 41893306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 464
Target Start/End: Original strand, 16457283 - 16457336
Alignment:
Q  411 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcacc 464  Q
    |||||| ||||||||||||||| |||||| || |  ||||||||||||||||||    
T  16457283 aaaaacaagcactgtaaacacggtatccaccaccgtccatcgtcactactcacc 16457336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 469
Target Start/End: Complemental strand, 36631123 - 36631039
Alignment:
Q  382 acatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaa 469  Q
    |||||||| |||||||| ||||||   | |||||| | ||||||||||||| |||||| || | |||||||| |||||||||| ||||    
T  36631123 acatcaccacctaaaacagactcc---aaaaaaacaaacactgtaaacacggtatccaccaccgcccatcgtaactactcacccccaa 36631039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 305 - 353
Target Start/End: Original strand, 5221506 - 5221553
Alignment:
Q  305 aggcgccgtatataggcggaacacccgaaaataaacaccctaaaagaca 353  Q
    |||||||||||||||||||||||||| |||| |||||||  ||||||||    
T  5221506 aggcgccgtatataggcggaacaccc-aaaagaaacaccaaaaaagaca 5221553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 343
Target Start/End: Complemental strand, 10552645 - 10552609
Alignment:
Q  307 gcgccgtatataggcggaacacccgaaaataaacacc 343  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  10552645 gcgccgtatataggcggaacatccgaaaacaaacacc 10552609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 463
Target Start/End: Original strand, 24995202 - 24995254
Alignment:
Q  411 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcac 463  Q
    |||||| |||| |||||||||| |||||| || | ||||||||||||||||||    
T  24995202 aaaaacaagcattgtaaacacggtatccaccaccgcccatcgtcactactcac 24995254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 353
Target Start/End: Original strand, 25184754 - 25184871
Alignment:
Q  236 caaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaa 333  Q
    |||||||||||||| || || |||||| |||||||| || ||||| |||  | ||| | | |||||||||||  || |||||||||| |||||||||| |    
T  25184754 caaattttattaaa-aaccaaatccctactcaagacaaaaagagaccggtgattcagagagtacaaactaaaaacgtcgtatataggtggaacacccg-a 25184851  T
Q  334 aataaacaccctaaaagaca 353  Q
    | |||||||| |||||||||    
T  25184852 agtaaacaccataaaagaca 25184871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 498
Target Start/End: Original strand, 37986666 - 37986751
Alignment:
Q  411 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccag 498  Q
    |||||| |||| |||||||||| |||| | || |||||||||||| ||||||||  ||| ||||||||  ||||  ||||||||||||    
T  37986666 aaaaacaagcattgtaaacacggtatctaccaccacccatcgtcattactcacccacaaagaacaccctccaaa--taaaactcccag 37986751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 496
Target Start/End: Original strand, 38577606 - 38577681
Alignment:
Q  420 cactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactccc 496  Q
    ||||||||||||  ||||||  |||| |||||||||||||||| | |||| |||||| || ||||| ||||||||||    
T  38577606 cactgtaaacacagtatccacaatcatccatcgtcactactcatccccaaagaacactccacaaaa-taaaactccc 38577681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 4e-42; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 237 - 464
Target Start/End: Complemental strand, 33719413 - 33719185
Alignment:
Q  237 aaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaa 334  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||  || |  | ||||||||| || ||||| | |||||||||||||| | ||||    
T  33719413 aaattttattaaacaaccagatccctgctcaagacgaacagagatcggtgaaactgagaatacaaacaaacggcgctgaatataggcggaacatc-gaaa 33719315  T
Q  335 ataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcaca-aaaacgagcactgtaaacacga 433  Q
     |||||||||||||| ||||   |||||||||||| ||||||||||   ||||||||||||||| |||||||||||| ||||||| | ||||||| | ||    
T  33719314 gtaaacaccctaaaa-acactcatgaggacaacacccaccaaaatacctatcaccgcctaaaaccgactccttcacaaaaaacgacctctgtaaaaatga 33719216  T
Q  434 tatccaacatcacccatcgtcactactcacc 464  Q
    |||||||||  || |||||||||||||||||    
T  33719215 tatccaacactactcatcgtcactactcacc 33719185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 233 - 513
Target Start/End: Complemental strand, 3478800 - 3478522
Alignment:
Q  233 cagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcggaatcaaaaaatacaaact-aaaggcgccgtatataggcggaacacccg 331  Q
    |||||||||||||| ||||| || ||||||| ||||||| |||||||| |||    | | | | ||| || |||||||||||||||||||||||||||||    
T  3478800 cagcaaattttatttaacaaccagatccctgatcaagacaaacagagaccggtgaaagagagtgcaacctgaaaggcgccgtatataggcggaacacccg 3478701  T
Q  332 aaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacac 431  Q
    ||||||||||||||||||||||   | ||| ||||||  |||||||| | |  |||||  || |||| |||  |||||| || |||| |||||||||  |    
T  3478700 aaaataaacaccctaaaagacaatccagagcacaacatccaccaaaaaacaagtcaccaactcaaacagacgtcttcacgaatacga-cactgtaaaagc 3478602  T
Q  432 gatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacaccaaag 513  Q
    |||||||| || || || ||||||||||||||| |||| |||||| |||||||||| |||||||||||||||||||||||||    
T  3478601 gatatccatcaccaaccgtcgtcactactcacc-ccaaagaacactcctcaaaatt-aaactcccagtcctcaacaccaaag 3478522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 231 - 464
Target Start/End: Complemental strand, 1321246 - 1321014
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 328  Q
    |||| ||||||||||||||||| |||||| || |||||||||||| |||||||  ||| |  | |||||||||  | | ||||||||||||||||||| |    
T  1321246 aacaacaaattttattaaacaaccacatctctactcaagacgaacggagatcgatgaaactgagaatacaaac--acgacgccgtatataggcggaactc 1321149  T
Q  329 ccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactcc-ttcacaaaaacgagcactgtaa 427  Q
    ||||||||||||||||||||| || ||| ||| |||| ||  |||||||||| |||||||| |||||||| ||| || ||||| ||| | | ||||||||    
T  1321148 ccgaaaataaacaccctaaaa-acccct-tgaagacaccatccaccaaaatacacatcaccacctaaaacagacccctttcacgaaagcaaccactgtaa 1321051  T
Q  428 acacgatatccaacatcacccatcgtcactactcacc 464  Q
    | |||||||| || | ||| |||||||||||||||||    
T  1321050 aaacgatatctaataccactcatcgtcactactcacc 1321014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 231 - 513
Target Start/End: Original strand, 24324425 - 24324708
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 328  Q
    |||| |||||||||||||||||| | ||   ||||||||||||| ||||||||  |||    | ||||||||| |||  || | |||||||  | |||||    
T  24324425 aacaacaaattttattaaacaattatatatttgctcaagacgaatagagatcgatgaaagtgagaatacaaacaaaaaacgtcatatatagctgaaacac 24324524  T
Q  329 ccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcac-aaaaacgagcactgtaa 427  Q
    |||||||||||||| |||||| |||||  ||||||||||||||||||||||| || ||||| | |||||| ||||||||||| |||||||| || |||||    
T  24324525 ccgaaaataaacactctaaaa-acacccttgaggacaacactcaccaaaatacacgtcaccacttaaaacagactccttcacgaaaaacgaccattgtaa 24324623  T
Q  428 acacgatatccaacatcacccatcgtcactactcaccaccaacg---aacacccctcaaaattaaaactcccagtcctcaacaccaaag 513  Q
      ||||||||||||  || |||||||||||||||||| | || |   |||||||||||||| |||||||| | ||||| ||||||||||    
T  24324624 gaacgatatccaac--ca-ccatcgtcactactcacccctaaagaaaaacacccctcaaaa-taaaactctccgtcctgaacaccaaag 24324708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 231 - 513
Target Start/End: Original strand, 6716363 - 6716647
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 328  Q
    |||| ||||||||||| ||| | ||  |||||||||||||| ||| ||||  |  ||| || | |||||||| |||||| ||||||||||  ||||||||    
T  6716363 aacatcaaattttatttaaccaccaagtccctgctcaagacaaaccgagacagatgaaacagagaatacaaattaaaggggccgtatataaccggaacac 6716462  T
Q  329 ccgaaaataaacaccctaaaagacac-ctct-gaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgta 426  Q
    | ||||||||||||||||||| | || |||  ||||| |||||  ||| || || |   |||| ||||||||  |||||||||| ||||||| |||||||    
T  6716463 ctgaaaataaacaccctaaaaaaaacactcacgaggataacaccaacccaagtacatgacaccacctaaaac--actccttcacgaaaacgaccactgta 6716560  T
Q  427 aacacgatatccaacatcacccatcgtcactactcaccaccaacg-aacacccctcaaaattaaaactcccagtcctcaacaccaaag 513  Q
    || ||| ||||  ||| ||||||| ||||||||||||| |||||| |||||||| ||||||| ||||||||| |||||||||||||||    
T  6716561 aaaacggtatctcacaccacccattgtcactactcacccccaacgaaacaccccacaaaatt-aaactcccattcctcaacaccaaag 6716647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 237 - 461
Target Start/End: Original strand, 42532892 - 42533117
Alignment:
Q  237 aaattttattaaacaatcacatccctgctcaagacgaacagagatcgga--atcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaa 334  Q
    ||||||||||| |||| || |||||||||||||||||||||||| |||   | |  | ||||||| | ||||||||||||||||||||||||||| | ||    
T  42532892 aaattttattagacaaccaaatccctgctcaagacgaacagagaccggtggaactgagaatacaaccaaaaggcgccgtatataggcggaacacctggaa 42532991  T
Q  335 ataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgat 434  Q
    ||||||||||||||| || ||  ||| |||||||| ||| |||| |||| ||| | ||||||||  ||   ||||| ||| | | || |||||| | ||     
T  42532992 ataaacaccctaaaa-actcccttgatgacaacacccacaaaaaaatacgtcatcacctaaaacatacctattcacgaaagcaaccattgtaaaaatgaa 42533090  T
Q  435 atccaacatcacccatcgtcactactc 461  Q
    |||||| | ||||||||||||||||||    
T  42533091 atccaataccacccatcgtcactactc 42533117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 324 - 418
Target Start/End: Original strand, 6492852 - 6492946
Alignment:
Q  324 aacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacga 418  Q
    |||||| ||||||||||||| ||||| |||||| |||||||||||  |||||||||  || ||||| |||||||| |||||||||| ||||||||    
T  6492852 aacacctgaaaataaacaccataaaaaacacctatgaggacaacatccaccaaaattcacgtcaccacctaaaacagactccttcataaaaacga 6492946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 231 - 330
Target Start/End: Original strand, 6726046 - 6726147
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 328  Q
    |||| ||||||||||||||||| || ||| |||||||||||||||||||||||  ||| |  | ||||||||| |||  |||||||||||||||||||||    
T  6726046 aacaacaaattttattaaacaaccagatctctgctcaagacgaacagagatcggtgaaactgagaatacaaacaaaaaacgccgtatataggcggaacac 6726145  T
Q  329 cc 330  Q
    ||    
T  6726146 cc 6726147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 293 - 409
Target Start/End: Original strand, 16828791 - 16828906
Alignment:
Q  293 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcc 392  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||| |||| || | ||| |||| || ||||  |||||||||| |||||| |  |    
T  16828791 aatacaaacaaaatgcgccgtatataggcggaacacccgaaaataaacatcctagaa-atacccctgaagaaaacaaccaccaaaatacacatcatcatc 16828889  T
Q  393 taaaactgactccttca 409  Q
    |||||||| | ||||||    
T  16828890 taaaactggccccttca 16828906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 233 - 338
Target Start/End: Original strand, 28534134 - 28534240
Alignment:
Q  233 cagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacaccc 330  Q
    ||||||||||||||||| || || |||  ||||||||||||||||||| |||  | | | | ||||||||  ||||||||||||||||||||||||||||    
T  28534134 cagcaaattttattaaa-aaccaaatctttgctcaagacgaacagagaccggtgatttagagaatacaaataaaaggcgccgtatataggcggaacaccc 28534232  T
Q  331 gaaaataa 338  Q
    ||||||||    
T  28534233 gaaaataa 28534240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 411 - 509
Target Start/End: Original strand, 47325693 - 47325789
Alignment:
Q  411 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacacc 509  Q
    |||||| ||||||||||||||  |||||| |||| |||||||||||||||||||  ||| ||||| ||||||||| |||||||||||| || |||||||    
T  47325693 aaaaacaagcactgtaaacacagtatccatcatcgcccatcgtcactactcacccacaaagaaca-ccctcaaaa-taaaactcccagaccccaacacc 47325789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 382 - 509
Target Start/End: Original strand, 44353345 - 44353468
Alignment:
Q  382 acatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctc 481  Q
    |||||||| |||||||| ||||||   | |||| | ||||||||||||||| |||||| || |  ||||||||||||||||||  ||| ||||| |||||    
T  44353345 acatcaccacctaaaacagactcc---aaaaaatcaagcactgtaaacacggtatccaccaccgtccatcgtcactactcacctacaaagaaca-ccctc 44353440  T
Q  482 aaaattaaaactcccagtcctcaacacc 509  Q
    |||| |||||||||||| || |||||||    
T  44353441 aaaaataaaactcccagaccccaacacc 44353468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 231 - 344
Target Start/End: Complemental strand, 8745583 - 8745469
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 328  Q
    |||| ||||| |||||||||||||| ||||||  ||||||||||||||||  ||  || |  |||||| |||| | || |||||||||||||||||||||    
T  8745583 aacatcaaatattattaaacaatcaaatccctattcaagacgaacagagactggtgaaactgaaaatagaaacaagagacgccgtatataggcggaacac 8745484  T
Q  329 ccgaaaataaacaccc 344  Q
    ||||||| ||||||||    
T  8745483 ccgaaaa-aaacaccc 8745469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 294 - 398
Target Start/End: Complemental strand, 16954878 - 16954775
Alignment:
Q  294 atacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcct 393  Q
    |||||||  |||||| |||||||||||||||||| |||||||||||||| |||||| ||||| |||| || ||||  ||| |||||| || ||||| |||    
T  16954878 atacaaataaaaggcaccgtatataggcggaacatccgaaaataaacacgctaaaa-acacccctgaagaaaacaaccacaaaaatacacgtcaccacct 16954780  T
Q  394 aaaac 398  Q
    |||||    
T  16954779 aaaac 16954775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 236 - 329
Target Start/End: Original strand, 47456706 - 47456800
Alignment:
Q  236 caaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacacc 329  Q
    |||||||||||||| || || ||| |||||||||||||||||||| |||  || || ||||||||||  |||||||| ||||||||||||||||||    
T  47456706 caaattttattaaa-aaccagatctctgctcaagacgaacagagaccggtgaaacagaaaatacaaatgaaaggcgcagtatataggcggaacacc 47456800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 382 - 478
Target Start/End: Complemental strand, 3867415 - 3867322
Alignment:
Q  382 acatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacaccc 478  Q
    |||||||| || |||||  |||||||||||||||| |   |||||||||||||||||| || |  |||||||||||||||||| |||| ||||||||    
T  3867415 acatcaccacccaaaacaaactccttcacaaaaacaa---ctgtaaacacgatatccaccaccgtccatcgtcactactcacccccaaagaacaccc 3867322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 236 - 349
Target Start/End: Original strand, 26385792 - 26385903
Alignment:
Q  236 caaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaa 333  Q
    |||| |||||| || | ||| |||||||||||||||||||||||| ||  || ||| ||| ||||||   ||| ||||||||||||||||||||||| ||    
T  26385792 caaaatttatttaatagtcagatccctgctcaagacgaacagagaccgatgattcagaaactacaaa---aagacgccgtatataggcggaacaccc-aa 26385887  T
Q  334 aataaacaccctaaaa 349  Q
    |||||||||| |||||    
T  26385888 aataaacaccataaaa 26385903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 231 - 353
Target Start/End: Complemental strand, 9107605 - 9107481
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 328  Q
    |||| ||||||||||| || || |  ||||||||||||||||||||  |||| |  | ||||| ||||||||  |||||||||||||| ||||||||| |    
T  9107605 aacaacaaattttatttaaaaacctaatccctgctcaagacgaacaatgatcagtgattcaaagaatacaaatcaaaggcgccgtataaaggcggaacgc 9107506  T
Q  329 ccgaaaataaacaccctaaaagaca 353  Q
     | ||||| |||||| |||||||||    
T  9107505 acaaaaatgaacaccataaaagaca 9107481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 293 - 340
Target Start/End: Complemental strand, 13312227 - 13312180
Alignment:
Q  293 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaac 340  Q
    ||||||||||||||||   |||||||||||||||||||||||||||||    
T  13312227 aatacaaactaaaggctttgtatataggcggaacacccgaaaataaac 13312180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 351 - 410
Target Start/End: Original strand, 28534277 - 28534336
Alignment:
Q  351 acacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcac 410  Q
    ||||| ||||||||||||| |||||||||| |||||||| |||||||| ||||| |||||    
T  28534277 acacccctgaggacaacacccaccaaaataaacatcaccacctaaaacagactctttcac 28534336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 411 - 509
Target Start/End: Original strand, 31971942 - 31972038
Alignment:
Q  411 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacacc 509  Q
    |||||| ||||||||||||||| |||| | || | |||||||||||||||||||  ||| ||||||||  ||||  |||||||||||| || |||||||    
T  31971942 aaaaacaagcactgtaaacacggtatcaaccaccgcccatcgtcactactcacccacaaagaacaccctccaaa--taaaactcccagaccccaacacc 31972038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 464
Target Start/End: Complemental strand, 23983530 - 23983425
Alignment:
Q  358 tgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcact 457  Q
    |||||||||||| |||||||||| ||| |||| |||||||| ||||| ||||| ||||| | ||||| ||| ||||||| ||  |  ||||||| |||||    
T  23983530 tgaggacaacacccaccaaaataaacaccaccacctaaaacagactcattcacgaaaacaaccactg-aaaaacgatatacataactacccatcatcact 23983432  T
Q  458 actcacc 464  Q
    |||||||    
T  23983431 actcacc 23983425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 444 - 498
Target Start/End: Complemental strand, 34390202 - 34390149
Alignment:
Q  444 cacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccag 498  Q
    ||||||||||||||||||| | |||| ||||||||||||||| ||||||||||||    
T  34390202 cacccatcgtcactactcatccccaaagaacacccctcaaaa-taaaactcccag 34390149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 344
Target Start/End: Complemental strand, 36674859 - 36674809
Alignment:
Q  294 atacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccc 344  Q
    |||||||| ||||||| ||||||||||||||| | ||||||||||||||||    
T  36674859 atacaaacaaaaggcgtcgtatataggcggaatatccgaaaataaacaccc 36674809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 411 - 509
Target Start/End: Complemental strand, 38306534 - 38306438
Alignment:
Q  411 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacacc 509  Q
    |||||| || |||| | |||||||||||| || |||||||||||||||||||||  ||| ||||| ||||||||| |||||||| ||| || |||||||    
T  38306534 aaaaacaagaactgcagacacgatatccaccaccacccatcgtcactactcacctacaaagaaca-ccctcaaaa-taaaactcacagaccccaacacc 38306438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 433 - 513
Target Start/End: Complemental strand, 8745405 - 8745323
Alignment:
Q  433 atatccaacatcacccatcgtcactactcaccaccaacg---aacacccctcaaaattaaaactcccagtcctcaacaccaaag 513  Q
    |||||||||| || || ||||||||||||||| |||| |   |||||||||||||||| |||||||||||| | ||||||||||    
T  8745405 atatccaacaccatccttcgtcactactcacccccaaagaaaaacacccctcaaaatt-aaactcccagtcttgaacaccaaag 8745323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 231 - 345
Target Start/End: Complemental strand, 44756021 - 44755906
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatc--ggaatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 328  Q
    |||| |||||||||||||||||  | |||||||||||||||||||  |||||   ||| | ||  |||||||| |||||||  ||||||||||| ||||     
T  44756021 aacaacaaattttattaaacaactagatccctgctcaagacgaacgaagatcagtgaaactaagcatacaaacaaaaggcgttgtatataggcgaaaca- 44755923  T
Q  329 ccgaaaataaacaccct 345  Q
    || ||||||||||||||    
T  44755922 cctaaaataaacaccct 44755906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 353
Target Start/End: Complemental strand, 23983669 - 23983574
Alignment:
Q  260 cctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagaca 353  Q
    ||||||||| ||||||| |||||||  | ||| | |||||||| |||||||  |||||||||||||| || || |||||||||| | |||||||||    
T  23983669 cctgctcaaaacgaacaaagatcggtgattcagagaatacaaattaaaggcatcgtatataggcggagcatccaaaaataaacatcataaaagaca 23983574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 486
Target Start/End: Original strand, 35745601 - 35745705
Alignment:
Q  382 acatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctc 481  Q
    |||||||| ||||| || ||| |||| ||| |||| | |||  ||||||| | ||||| |  ||||||||||||||||||||| |||| ||||||| |||    
T  35745601 acatcaccacctaagacagacaccttaacagaaacaaacacactaaacacaacatccacccccacccatcgtcactactcacccccaaagaacacctctc 35745700  T
Q  482 aaaat 486  Q
    |||||    
T  35745701 aaaat 35745705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 329
Target Start/End: Complemental strand, 9350136 - 9350067
Alignment:
Q  261 ctgctcaagacgaacagagatcggaat--caaaaaatacaaactaaaggcgccgtatataggcggaacacc 329  Q
    |||| |||||||||||||||||||  |  |||||| ||||||| || ||||||||||||||||||||||||    
T  9350136 ctgcacaagacgaacagagatcggtgttacaaaaagtacaaaccaa-ggcgccgtatataggcggaacacc 9350067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 328
Target Start/End: Original strand, 22567783 - 22567818
Alignment:
Q  293 aatacaaactaaaggcgccgtatataggcggaacac 328  Q
    ||||||||| ||||||||||||||||||||||||||    
T  22567783 aatacaaacaaaaggcgccgtatataggcggaacac 22567818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 261 - 351
Target Start/End: Complemental strand, 2359437 - 2359342
Alignment:
Q  261 ctgctcaagacgaacagagatcg--gaatcaaaaaatacaaacta---aaggcgccgtatataggcggaacacccgaaaataaacaccctaaaaga 351  Q
    ||||||||||||||||||||  |  || ||| |||||||||||||   | | ||||||||||||||| ||||| |||||||| ||||| |||||||    
T  2359437 ctgctcaagacgaacagagagtggtgattcagaaaatacaaactacagacgccgccgtatataggcgaaacacacgaaaatatacaccataaaaga 2359342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 509
Target Start/End: Complemental strand, 6585118 - 6585058
Alignment:
Q  448 catcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacacc 509  Q
    ||||||||||||||||| ||||  | |||||||||||| |||||||||||| | ||||||||    
T  6585118 catcgtcactactcacctccaaatagcacccctcaaaa-taaaactcccagacttcaacacc 6585058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 349
Target Start/End: Complemental strand, 25438748 - 25438691
Alignment:
Q  293 aatacaaactaaaggcgccgtatataggcggaacacccgaaaa-taaacaccctaaaa 349  Q
    ||||||||| | | || |||||||||||||||||||||||||| |||||||| |||||    
T  25438748 aatacaaacgatatgccccgtatataggcggaacacccgaaaagtaaacaccataaaa 25438691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 280
Target Start/End: Original strand, 40292637 - 40292685
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagaga 280  Q
    |||| |||||||||||||| ||||| |||||| |||||||||||||||||    
T  40292637 aacaacaaattttattaaa-aatcagatccctcctcaagacgaacagaga 40292685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 4e-42; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 295 - 513
Target Start/End: Original strand, 13953941 - 13954159
Alignment:
Q  295 tacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgccta 394  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| | |||  |||||||||| | |||||||||| |  ||| | ||||    
T  13953941 tacaaactaaaggcgccgtatataggcggaacacctgaaaataaacaccttaaaaaatacccttgaggacaactcccaccaaaatacatgtcatctccta 13954040  T
Q  395 aaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacg-aacacccctcaaaattaaaact 493  Q
    |||| ||||  ||||  || ||||  |||||||| || |||||| ||||||||||||||||| |||| || |||||| |||||||||| ||||| |||||    
T  13954041 aaacagactttttcatgaagacgactactgtaaaaacaatatcccacatcacccatcgtcacaactctcccccaacgaaacacccctctaaatt-aaact 13954139  T
Q  494 cccagtcctcaacaccaaag 513  Q
    ||||||||||||| ||||||    
T  13954140 cccagtcctcaacgccaaag 13954159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 294 - 514
Target Start/End: Original strand, 26045655 - 26045876
Alignment:
Q  294 atacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcct 393  Q
    |||||||| ||||||||||||||||| ||||||| || |||||||||||||||||| || || ||||||||||||| |||||||||  || ||||| |||    
T  26045655 atacaaacaaaaggcgccgtatatagacggaacatccaaaaataaacaccctaaaaaacgcccctgaggacaacacccaccaaaattcacgtcaccacct 26045754  T
Q  394 aaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacg---aacacccctcaaaattaaa 490  Q
    ||||| |||| |||||  |||| || ||| ||||| |||| |||||||| | ||||||||||||||||||| |||| |   |||||||||||||||| ||    
T  26045755 aaaacagacttcttcatgaaaatgaccacggtaaaaacgaaatccaacacctcccatcgtcactactcacc-ccaaagaaaaacacccctcaaaatt-aa 26045852  T
Q  491 actcccagtcctcaacaccaaagt 514  Q
    |||| || |||| |||||||||||    
T  26045853 actctcaatcctaaacaccaaagt 26045876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 261 - 423
Target Start/End: Complemental strand, 30097757 - 30097593
Alignment:
Q  261 ctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctct 358  Q
    ||||| |||||||||| ||| |||  ||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |  |    
T  30097757 ctgcttaagacgaacaaagaccggtaaattaaagaatacaaactaaagacgccgtatataggcggaacacccgaaaataaacaccctaaaaaacatccat 30097658  T
Q  359 gaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcact 423  Q
    || |||||||| |||||||||| || ||||| |||||||| ||||||||||| ||||| ||||||    
T  30097657 gatgacaacacccaccaaaatacacgtcaccacctaaaacagactccttcacgaaaacaagcact 30097593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 231 - 464
Target Start/End: Original strand, 26405175 - 26405406
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 328  Q
    |||| ||||||||||||||||| || ||  |||||||||||||||| ||| |||  || |  | ||||||||| ||||||| ||||||||| ||||||||    
T  26405175 aacaacaaattttattaaacaaccagatttctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaggcgtcgtatatagtcggaacac 26405274  T
Q  329 ccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaa 428  Q
    ||||||||||||||| ||||| ||||| ||||||||||||  |||||||||| || ||||| |||||||| |||| |||||   ||| || |||||| ||    
T  26405275 ccgaaaataaacaccttaaaa-acacccctgaggacaacaaccaccaaaatacacgtcaccacctaaaacagacttcttcatggaaatga-cactgttaa 26405372  T
Q  429 cacgatatccaacatcacccatcgtcactactcacc 464  Q
     || |||||||  |||||||||||||||||||||||    
T  26405373 aaccatatcca--atcacccatcgtcactactcacc 26405406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 231 - 463
Target Start/End: Complemental strand, 8297924 - 8297694
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 328  Q
    |||||||||||||||| |||||||| ||| || ||||||||||||||||| |||  || |  | ||||||||  |||||||  ||| |||||||||||||    
T  8297924 aacagcaaattttattgaacaatcagatctctactcaagacgaacagagaccggtgaaactgagaatacaaaa-aaaggcgttgtacataggcggaacac 8297826  T
Q  329 ccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaa 428  Q
    | ||||||| ||||||||||| ||||| ||||||| ||||  |||||||||| |||||||| ||||||||  |||||||||  |||| || || ||||||    
T  8297825 ctgaaaatacacaccctaaaa-acacccctgaggataacatccaccaaaatacacatcaccacctaaaacacactccttcaagaaaaagaccaatgtaaa 8297727  T
Q  429 cacgatatccaacatcacccatcgtcactactcac 463  Q
     ||||| ||||||  |||| |||||||||||||||    
T  8297726 aacgatttccaac--cacctatcgtcactactcac 8297694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 291 - 513
Target Start/End: Original strand, 14302133 - 14302356
Alignment:
Q  291 aaaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccg 390  Q
    |||||| |||| | || ||||||||||||  ||||||||| |||||||| | ||||||| ||||| |||| |||||||| |||||||||| || |||||     
T  14302133 aaaatataaacaagagacgccgtatatagaaggaacacccaaaaataaaaatcctaaaa-acacccctgatgacaacacccaccaaaatacacgtcacca 14302231  T
Q  391 cctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacg---aacacccctcaaaatt 487  Q
    |||||||| || |||||| | ||||||| || |||||| ||||||||||||| ||||  ||||||||||||| | |||| |   || |||||||||||||    
T  14302232 cctaaaacagattccttcgcgaaaacgaccaatgtaaaaacgatatccaacaccacctgtcgtcactactcatccccaaagaaaaatacccctcaaaatt 14302331  T
Q  488 aaaactcccagtcctcaacaccaaag 513  Q
     ||||||||| |||| ||||||||||    
T  14302332 -aaactcccactcctgaacaccaaag 14302356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 293 - 489
Target Start/End: Complemental strand, 7682943 - 7682747
Alignment:
Q  293 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcc 392  Q
    |||||||| |||||||| ||||||||||||||||| |||||||||| ||||| |||| | || | |||| ||||||| |||||||||| |||||||| ||    
T  7682943 aatacaaattaaaggcgtcgtatataggcggaacatccgaaaataagcaccc-aaaaaatacttatgagaacaacacccaccaaaatacacatcaccacc 7682845  T
Q  393 taaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacg-aacacccctcaaaattaa 489  Q
    |||||  ||||| ||||||||||||| ||| ||||| ||  ||||   || || |||||||||||||||| | |||| | ||||||||||||||||||    
T  7682844 taaaatagactctttcacaaaaacgaccaccgtaaaaactttatctcgcaccatccatcgtcactactcaaccccaatgaaacacccctcaaaattaa 7682747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 231 - 416
Target Start/End: Original strand, 7194928 - 7195114
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 328  Q
    |||||||||||||||||||||| || |||||| ||||||||||||| ||||||  ||| |  | |||| | || ||| | | ||| |||| ||||||||     
T  7194928 aacagcaaattttattaaacaaccagatccctactcaagacgaacaaagatcgatgaaactgagaatatagacaaaatgagtcgtttatatgcggaacat 7195027  T
Q  329 ccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaac 416  Q
    || |||||||||||||||||| ||||| ||| ||||||||| |||||||||| || ||||| |||||||| |||||||||||||||||    
T  7195028 ccaaaaataaacaccctaaaa-acaccgctgcggacaacacccaccaaaatacacgtcaccacctaaaacagactccttcacaaaaac 7195114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 233 - 461
Target Start/End: Complemental strand, 25992453 - 25992233
Alignment:
Q  233 cagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcggaatcaaaa----aatacaaactaaaggcgccgtatataggcggaacac 328  Q
    |||||||| ||||||||||| || ||| |||||||||||||||||||| |||  | ||||    ||||||||| |||||||||||||||| |||||||||    
T  25992453 cagcaaatattattaaacaaccagatctctgctcaagacgaacagagaccgg--tgaaaatgataatacaaacaaaaggcgccgtatatatgcggaacac 25992356  T
Q  329 ccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaa 428  Q
    |||| |||||||||||||||| ||||| |  | |||||||| |||||||||        || |||||||| ||| ||||||| ||| | | |||||||||    
T  25992355 ccgacaataaacaccctaaaa-acacc-ccaatgacaacacccaccaaaat--------ccacctaaaacagaccccttcacgaaagcaaccactgtaaa 25992266  T
Q  429 cacgatatccaacatcacccatcgtcactactc 461  Q
     ||||||||||| | ||||||||| ||||||||    
T  25992265 aacgatatccaataccacccatcgccactactc 25992233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 382 - 508
Target Start/End: Original strand, 7161795 - 7161919
Alignment:
Q  382 acatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctc 481  Q
    |||||||  |||||||| ||||||||||||||||| ||||||||||||||||| |||| || |||||| |||||||||||||| |||| ||||| || ||    
T  7161795 acatcactacctaaaacagactccttcacaaaaacaagcactgtaaacacgatttccaccaccacccaacgtcactactcacccccaaagaaca-ccatc 7161893  T
Q  482 aaaattaaaactcccagtcctcaacac 508  Q
    |||| |||||||||||| || ||||||    
T  7161894 aaaa-taaaactcccagaccccaacac 7161919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 337 - 514
Target Start/End: Original strand, 21398054 - 21398231
Alignment:
Q  337 aaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatat 436  Q
    ||||||| ||||| ||||| |||||||||||||| || |||||| || |||||  ||||||| ||| ||||||| ||||| | |  |||||| |||||||    
T  21398054 aaacaccttaaaaaacacccctgaggacaacacttacaaaaatacacgtcaccatctaaaacagacgccttcacgaaaacaacctttgtaaaaacgatat 21398153  T
Q  437 ccaacatcacccatcgtcactactcaccaccaacg-aacacccctcaaaattaaaactcccagtcctcaacaccaaagt 514  Q
    ||  || |||||||| ||| |||||||| |||||| |||| ||||| ||| | ||||||| ||||||||||||||||||    
T  21398154 cccgcaccacccatcatcagtactcacccccaacgaaacaaccctctaaaat-aaactcctagtcctcaacaccaaagt 21398231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 293 - 358
Target Start/End: Original strand, 24071952 - 24072017
Alignment:
Q  293 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctct 358  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  24071952 aatacaaactaagggcgccgtatataggcggaacacccgaaaataaacatcataaaagacacctct 24072017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 293 - 441
Target Start/End: Complemental strand, 10175069 - 10174923
Alignment:
Q  293 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcc 392  Q
    ||||||||| ||||||  |||||||||||  |||||| |||| |||||| ||||||| ||||||| ||||||||||| ||||||| || || | ||| ||    
T  10175069 aatacaaacaaaaggcatcgtatataggcaaaacacctgaaa-taaacatcctaaaa-acacctccgaggacaacacccaccaaagtacacgtaaccacc 10174972  T
Q  393 taaaactgactccttcacaaaaacgagcactgtaaacacgatatccaac 441  Q
    |||||| |||||||||  |||||||| ||| ||||| ||||||||||||    
T  10174971 taaaacagactccttctaaaaaacgaccacggtaaaaacgatatccaac 10174923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 231 - 455
Target Start/End: Original strand, 33109829 - 33110050
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 328  Q
    |||||||||| |||||||||||||| ||| ||||| |||||||||| | || ||  || |  | ||||||||| |||| ||| |||||  | || |||||    
T  33109829 aacagcaaatattattaaacaatcaaatctctgcttaagacgaacataaattggtgaaactgagaatacaaacaaaagacgctgtata--gccgaaacac 33109926  T
Q  329 ccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaa 428  Q
    ||||||||||||||  ||||| ||||| || | |||||||| |||||||||| || ||| | ||||||||  || ||||||| ||||||| |||||||||    
T  33109927 ccgaaaataaacactttaaaa-acacc-ct-atgacaacacccaccaaaatacacgtcatcacctaaaacaaaccccttcacgaaaacgaccactgtaaa 33110023  T
Q  429 cacgatatccaacatcacccatcgtca 455  Q
     ||||||||||| | ||||||||||||    
T  33110024 aacgatatccaataccacccatcgtca 33110050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 231 - 343
Target Start/End: Complemental strand, 8731391 - 8731278
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 328  Q
    ||||||||||||||||||| ||||| ||||||||||||||| |||||| | |||  | ||| | ||||||||| ||||||||||||||||| || |||||    
T  8731391 aacagcaaattttattaaa-aatcagatccctgctcaagacaaacagaaaccggtgattcagagaatacaaacaaaaggcgccgtatatagacgaaacac 8731293  T
Q  329 ccgaaaataaacacc 343  Q
    || ||||||||||||    
T  8731292 ccaaaaataaacacc 8731278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 257 - 343
Target Start/End: Complemental strand, 31742592 - 31742504
Alignment:
Q  257 atccctgctcaagacgaacagagatcggaat--caaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacacc 343  Q
    |||||||| ||||||||||||||| |||  |  ||| || ||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  31742592 atccctgcacaagacgaacagagaccggtgttacaagaagtacaaacaaaaggcgccgtatataggcggaacacccgaaaacaaacacc 31742504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 231 - 337
Target Start/End: Complemental strand, 23426754 - 23426646
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 328  Q
    |||||||||||||||| || ||||| ||  |||||||||| ||||||||| |||  | ||| | |||||||   ||||| ||||||||||||||||||||    
T  23426754 aacagcaaattttatttaaaaatcagattgctgctcaagaggaacagagaccggtgattcagagaatacaactaaaaggtgccgtatataggcggaacac 23426655  T
Q  329 ccgaaaata 337  Q
    |||||||||    
T  23426654 ccgaaaata 23426646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 411 - 514
Target Start/End: Complemental strand, 18593516 - 18593415
Alignment:
Q  411 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacacca 510  Q
    |||||| ||||||||||||||| |||||| || | |||||||||||||||||||  ||| ||||| ||  ||||  |||||||||||| || |||||||     
T  18593516 aaaaacaagcactgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaagaacatcctccaaa--taaaactcccagaccccaacaccc 18593419  T
Q  511 aagt 514  Q
    ||||    
T  18593418 aagt 18593415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 406
Target Start/End: Complemental strand, 31722058 - 31721950
Alignment:
Q  295 tacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgccta 394  Q
    |||||||||| |||||||||||||| ||||||||||||||| ||||||    |||| ||||  || |  |||||| |||||||||| |||||||  ||||    
T  31722058 tacaaactaa-ggcgccgtatatagacggaacacccgaaaacaaacactaacaaaggcacccatgtgatcaacacccaccaaaataaacatcac--ccta 31721962  T
Q  395 aaactgactcct 406  Q
    ||||||||||||    
T  31721961 aaactgactcct 31721950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 257 - 329
Target Start/End: Original strand, 26367632 - 26367706
Alignment:
Q  257 atccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacacc 329  Q
    ||||||||| |||||||||||||||| |  ||||||| | |||||| ||||| |||||||||||| |||||||||    
T  26367632 atccctgcttaagacgaacagagatcagtaaatcaaagattacaaaataaagacgccgtatatagacggaacacc 26367706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 251 - 354
Target Start/End: Original strand, 25657767 - 25657871
Alignment:
Q  251 aatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaa 348  Q
    ||||| |||||||||||| ||||||| | |||||  ||| | | | ||||||||| ||||||||||||||||| ||||| || |||||||||||| ||||    
T  25657767 aatcatatccctgctcaaaacgaacataaatcggtgaataagagattacaaactacaggcgccgtatataggcagaaca-cctaaaataaacaccataaa 25657865  T
Q  349 agacac 354  Q
    | ||||    
T  25657866 aaacac 25657871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 386 - 439
Target Start/End: Original strand, 5656878 - 5656931
Alignment:
Q  386 caccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatcca 439  Q
    |||| ||||||||||||||||||| |||||  || |||||||||||||||||||    
T  5656878 caccacctaaaactgactccttcataaaaagaagaactgtaaacacgatatcca 5656931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 294 - 335
Target Start/End: Complemental strand, 27713462 - 27713421
Alignment:
Q  294 atacaaactaaaggcgccgtatataggcggaacacccgaaaa 335  Q
    |||||||| ||||||||| |||||||||||||||||||||||    
T  27713462 atacaaacgaaaggcgccatatataggcggaacacccgaaaa 27713421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 292 - 349
Target Start/End: Original strand, 33258579 - 33258636
Alignment:
Q  292 aaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaa 349  Q
    |||||||||  |||||||||||||||| | | |||||||||||||||||||| |||||    
T  33258579 aaatacaaataaaaggcgccgtatatatgtgaaacacccgaaaataaacaccataaaa 33258636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 464
Target Start/End: Original strand, 18313425 - 18313504
Alignment:
Q  382 acatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcacc 464  Q
    |||||||| |||||||| ||||||   | |||||| | ||| |||||||||||||||| || ||| |||||||||||||||||    
T  18313425 acatcaccacctaaaacagactcc---aaaaaaacaaacaccgtaaacacgatatccatcaccactcatcgtcactactcacc 18313504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 380
Target Start/End: Complemental strand, 37108170 - 37108103
Alignment:
Q  312 gtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaata 380  Q
    |||||||||||||||| |  |||||||||||||||||| |||||  |||||| ||||| ||||||||||    
T  37108170 gtatataggcggaacatcaaaaaataaacaccctaaaa-acacccatgaggataacacccaccaaaata 37108103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 293 - 407
Target Start/End: Complemental strand, 5187332 - 5187219
Alignment:
Q  293 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcc 392  Q
    ||||||||| |||||||||| ||||||  | | |||||||||||||||||| |||||| |||   |||||| ||||  |||| || || |||||||| ||    
T  5187332 aatacaaacaaaaggcgccgcatatagatgaagcacccgaaaataaacaccataaaag-cactcatgaggataacatccacccaagtacacatcaccacc 5187234  T
Q  393 taaaactgactcctt 407  Q
    |||| | ||||||||    
T  5187233 taaaccagactcctt 5187219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 464
Target Start/End: Complemental strand, 29087752 - 29087699
Alignment:
Q  411 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcacc 464  Q
    |||||| ||||||||||||||| ||| || || | |||||||||||||||||||    
T  29087752 aaaaacaagcactgtaaacacggtattcaccaccgcccatcgtcactactcacc 29087699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 343
Target Start/End: Complemental strand, 6159866 - 6159827
Alignment:
Q  303 aaaggcgccgtatataggcggaacacccgaaaataaacacc 343  Q
    |||||||| ||||||||||||||||||| ||||||||||||    
T  6159866 aaaggcgctgtatataggcggaacaccc-aaaataaacacc 6159827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 231 - 469
Target Start/End: Complemental strand, 37161 - 36924
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 328  Q
    |||| |||| |||||||||||| |  |||||||||||||||||||||||| |||  || |  | ||||||||| |||| ||| ||||||||||||||||     
T  37161 aacaacaaaatttattaaacaacctgatccctgctcaagacgaacagagaccggtgaaactgataatacaaacaaaagacgctgtatataggcggaacat 37062  T
Q  329 ccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaa 428  Q
    ||||||||||||||| ||||| |||||  ||||||| |||| || ||||||| || ||||| |||||||| |||||||||||  |||| | |||||||||    
T  37061 ccgaaaataaacaccataaaaaacacccatgaggaccacacccaacaaaatacacgtcaccacctaaaacagactccttcac-gaaaccaccactgtaaa 36963  T
Q  429 cacgatatccaacatcacccatcgtcactactcaccaccaa 469  Q
     |||| |||||||  || ||| |||||||||||||| ||||    
T  36962 aacgacatccaac--catccaccgtcactactcacccccaa 36924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 231 - 469
Target Start/End: Original strand, 50518716 - 50518952
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 328  Q
    |||| ||||||||||||||||||   ||||||||||||||||||||||||  ||  || |  | ||||||||| ||||| | ||||||||||||||||||    
T  50518716 aacatcaaattttattaaacaatttgatccctgctcaagacgaacagagactggtgaaactgagaatacaaacaaaaggtgtcgtatataggcggaacac 50518815  T
Q  329 ccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaa 428  Q
    ||||||||||||||||||||| |||||  ||||||| |||| || ||||||| || |||||  ||||||| |||||||||||  | || | |||||||||    
T  50518816 ccgaaaataaacaccctaaaa-acacccatgaggaccacacccaacaaaatacacctcaccatctaaaacagactccttcac-gataccaccactgtaaa 50518913  T
Q  429 cacgatatccaacatcacccatcgtcactactcaccaccaa 469  Q
     |||||||| |||   | |||||||||||||||||| ||||    
T  50518914 aacgatatctaac--gatccatcgtcactactcacctccaa 50518952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 236 - 513
Target Start/End: Complemental strand, 4171193 - 4170914
Alignment:
Q  236 caaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaa 333  Q
    |||||| ||||||||||  | ||||||||| |||||||||||||| |||  || |  | ||||||||| ||||||| ||||||||||||||||||| |||    
T  4171193 caaattctattaaacaactaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaa 4171094  T
Q  334 aataaacaccctaaaagacacctctgaggacaacactcac-caaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacg 432  Q
    |||||||||||||||| ||| |  |||||||||||| |||  ||||||||| ||| | |||||||  ||||||||||| |||| || || |||| | | |    
T  4171093 aataaacaccctaaaa-acatcattgaggacaacacccacaaaaaatatacgtcatcacctaaaatagactccttcacgaaaatgaccattgtataaatg 4170995  T
Q  433 atatccaacatcacccatcgtcactactcaccac---caacgaacacccctcaaaattaaaactcccagtcctcaacaccaaag 513  Q
    |||||||||  || |||||||||||||||||| |   | |  |||||||||| ||| |||||||| ||||||| ||||||||||    
T  4170994 atatccaac--catccatcgtcactactcacccccttctaaaaacacccctc-aaagtaaaactctcagtccttaacaccaaag 4170914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 233 - 349
Target Start/End: Complemental strand, 25648135 - 25648017
Alignment:
Q  233 cagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacaccc 330  Q
    |||||||||| ||||||||| |  ||||||| ||||||||||||||||||||  || | || ||||||||| |||||||| |||||||| ||||||||||    
T  25648135 cagcaaatttaattaaacaacctaatccctgttcaagacgaacagagatcggtgaaactaagaatacaaacaaaaggcgcagtatatagacggaacaccc 25648036  T
Q  331 gaaaataaacaccctaaaa 349  Q
    |||||||||||||||||||    
T  25648035 gaaaataaacaccctaaaa 25648017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 231 - 355
Target Start/End: Original strand, 46358009 - 46358135
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcggaa--tcaaaaaatacaaactaaaggcgccgtatataggcggaacac 328  Q
    |||| ||||||||||| ||||| || |||||||||||||||||||||||| | ||   ||| |||||||||||||||| ||| ||||||||||| |||||    
T  46358009 aacaacaaattttatttaacaaccagatccctgctcaagacgaacagagaccagagattcagaaaatacaaactaaagacgctgtatataggcgaaacac 46358108  T
Q  329 ccgaaaataaacaccctaaaagacacc 355  Q
    | ||||||||||||| |||||||||||    
T  46358109 ctgaaaataaacaccttaaaagacacc 46358135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 237 - 490
Target Start/End: Complemental strand, 37123818 - 37123572
Alignment:
Q  237 aaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaa 334  Q
    ||||||||||||||||| | ||| ||||||||||||||| |||| ||  ||| |  | ||||||||| ||||||| | || |||| ||||||||||||||    
T  37123818 aaattttattaaacaattaaatctctgctcaagacgaactgagaccgatgaaactgagaatacaaacaaaaggcgtcctacatagtcggaacacccgaaa 37123719  T
Q  335 ataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgat 434  Q
    |||||||||||            ||| |||||||| |||||||||| ||||||||   |||||  |||| |||||| ||||||| ||||||||| |||||    
T  37123718 ataaacaccct------------tgaagacaacacccaccaaaatacacatcaccatataaaatagacttcttcacgaaaacgaccactgtaaaaacgat 37123631  T
Q  435 atccaacatcacccatcgtcactactcaccacca---acgaacacccctcaaaattaaa 490  Q
    |||||||| ||||  | ||||||||||||| |||   | ||||||||||| ||||||||    
T  37123630 atccaacaccacctgttgtcactactcaccgccaaagatgaacacccctccaaattaaa 37123572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 231 - 398
Target Start/End: Original strand, 14280176 - 14280343
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 328  Q
    ||||| |||| |||||||||||||| |||  ||||||||||||||| ||||||  ||| |  | |||||||| |||||||||||||||||||||||||||    
T  14280176 aacagtaaatattattaaacaatcagatctttgctcaagacgaacaaagatcgatgaaactgataatacaaattaaaggcgccgtatataggcggaacac 14280275  T
Q  329 ccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaac 398  Q
    |||||| ||||||| || ||| | | | ||||||||||||| ||| |||||| || ||||| ||||||||    
T  14280276 ccgaaagtaaacactctgaaa-atatc-ctgaggacaacacccactaaaatacacgtcaccacctaaaac 14280343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 237 - 464
Target Start/End: Original strand, 48892986 - 48893214
Alignment:
Q  237 aaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaa 334  Q
    ||||||||||||||||  | |||||||||||||||||||| |||  |  ||| |  | ||||||||| || |  |||||||||| | |||||| ||||||    
T  48892986 aaattttattaaacaactagatccctgctcaagacgaacaaagacagatgaaactgagaatacaaacaaacgatgccgtatataagaggaacatccgaaa 48893085  T
Q  335 ataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgat 434  Q
    ||||||||  ||||| ||||| |||| |||||||| |||||||||| |  ||||| |||||||  |||||||| ||||||||||  || ||||| || ||    
T  48893086 ataaacactttaaaa-acacccctgaagacaacacccaccaaaatacatgtcaccacctaaaagagactcctttacaaaaacgattacggtaaaaacaat 48893184  T
Q  435 atccaacatcacccatcgtcactactcacc 464  Q
    ||||||  ||| || |||||||||||||||    
T  48893185 atccaatgtcatccgtcgtcactactcacc 48893214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 231 - 353
Target Start/End: Complemental strand, 32010241 - 32010117
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 328  Q
    |||| ||||||||||| ||||| || |||||| |||||||||||||||||||||  | ||| | ||||||| ||||| ||| ||||||||||||||| ||    
T  32010241 aacaacaaattttatttaacaaccagatccctactcaagacgaacagagatcggtgattcagagaatacaacctaaaagcgtcgtatataggcggaatac 32010142  T
Q  329 ccgaaaataaacaccctaaaagaca 353  Q
    | ||||||||||||| |||||||||    
T  32010141 ctgaaaataaacaccttaaaagaca 32010117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 296 - 464
Target Start/End: Complemental strand, 14194317 - 14194154
Alignment:
Q  296 acaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaa 395  Q
    |||||| ||||| ||| ||||||||||||||| ||||||||||||| ||||||| ||||   ||||||| |||| |||||||||| || ||||| |||||    
T  14194317 acaaacaaaaggtgccttatataggcggaacatccgaaaataaacatcctaaaa-acactcatgaggaccacacccaccaaaatacacgtcaccacctaa 14194219  T
Q  396 aactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcacc 464  Q
    ||| |||||| |||| ||| ||  ||||| ||  ||||||||||||  || ||||||||||||||||||    
T  14194218 aacagactccatcacgaaatcg-ccactg-aataacgatatccaac--catccatcgtcactactcacc 14194154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 307 - 469
Target Start/End: Original strand, 28937427 - 28937579
Alignment:
Q  307 gcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactcct 406  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||| |  | |||||||| |||||||||        || |||||||| ||| |||    
T  28937427 gcgccgtatataagcggaacacccgaaaataaacaccctaaaa-acacc-ccaatgacaacacccaccaaaat--------ccacctaaaacagacccct 28937516  T
Q  407 tcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaa 469  Q
    |||| |||  || ||||||||| ||||||||||| | ||||||||| ||||||||||| ||||    
T  28937517 tcacgaaagtgaccactgtaaaaacgatatccaataccacccatcgccactactcacctccaa 28937579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 231 - 464
Target Start/End: Original strand, 33143579 - 33143812
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 328  Q
    |||| ||||||||||||||||| || ||| ||||||||| |||||| | |||||  || |  | ||||||| | ||||||| | ||||||||||||||||    
T  33143579 aacaacaaattttattaaacaaccagatctctgctcaaggcgaacataaatcggtgaaactgagaatacaaccaaaaggcgtcatatataggcggaacac 33143678  T
Q  329 ccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaa 428  Q
    ||||||| |||||||| |||| || ||   ||||| ||||  ||||| || | || ||||| ||||||||  |||||||||| ||||| | ||||| | |    
T  33143679 ccgaaaa-aaacaccc-aaaaaactcccaagaggataacatccaccataaaacacgtcaccacctaaaacaaactccttcacgaaaaccaccactgaaca 33143776  T
Q  429 cacgatatccaacatcacccatcgtcactactcacc 464  Q
     ||||||||||||  || || |||||||||||||||    
T  33143777 aacgatatccaaccccatccgtcgtcactactcacc 33143812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 236 - 501
Target Start/End: Complemental strand, 7105294 - 7105025
Alignment:
Q  236 caaattttattaaacaatcacatccctgctcaagacgaacagagatcg-----gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacaccc 330  Q
    ||||||||||||  || ||| |||||||||||||||||||||||| ||     ||| || | | |||||||||||| | || |||| |||||||||||||    
T  7105294 caaattttatta--cattcagatccctgctcaagacgaacagagaccgccggtgaaacagagattacaaactaaagacaccttataaaggcggaacaccc 7105197  T
Q  331 gaaaataaacaccc-----taaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgt 425  Q
     |||||||||||||     ||||| ||||  | || ||||| || | |||||| ||   ||||| |||||||| |||| |||||  ||||| |||||| |    
T  7105196 aaaaataaacacccaaccctaaaaaacacgcccgaagacaa-acccgccaaaacatg--tcaccacctaaaacagacttcttcaagaaaacaagcactat 7105100  T
Q  426 aaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcc 501  Q
    ||| ||  |||||| || ||||||||||||||||||||| | ||  ||||||||| |||| |||||||||||||||    
T  7105099 aaaaacagtatccaccaccacccatcgtcactactcaccccaaagaaacaccccttaaaa-taaaactcccagtcc 7105025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 231 - 349
Target Start/End: Complemental strand, 14893384 - 14893264
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 328  Q
    |||| ||||||||||||||||| || ||  |||||||||| |||||||||  ||  || |  | | ||||||| |||| |||||||||||||||||||||    
T  14893384 aacaacaaattttattaaacaaccagataactgctcaagatgaacagagactggtgaaaccgagagtacaaacaaaagacgccgtatataggcggaacac 14893285  T
Q  329 ccgaaaataaacaccctaaaa 349  Q
    | |||||||||||||||||||    
T  14893284 ctgaaaataaacaccctaaaa 14893264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 382 - 509
Target Start/End: Complemental strand, 43012677 - 43012552
Alignment:
Q  382 acatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctc 481  Q
    ||||||||  ||||||| ||||||||||||||||| |||| |||||||||| |||||| |  |  |||||| ||||||||||| |||| ||||| |||||    
T  43012677 acatcaccatctaaaacagactccttcacaaaaacaagcattgtaaacacggtatccacccccgtccatcgccactactcacctccaaagaaca-ccctc 43012579  T
Q  482 aaaattaaaactcccagtcctcaacacc 509  Q
     ||||||||||||| || || |||||||    
T  43012578 -aaattaaaactcctagaccccaacacc 43012552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 420 - 486
Target Start/End: Complemental strand, 45399060 - 45398994
Alignment:
Q  420 cactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaat 486  Q
    |||||||||||| |||||||  |||| |||||||||||||||||| |||||||||||||| ||||||    
T  45399060 cactgtaaacacaatatccacaatcatccatcgtcactactcacccccaacgaacaccccacaaaat 45398994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 420 - 509
Target Start/End: Original strand, 23328167 - 23328255
Alignment:
Q  420 cactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacacc 509  Q
    |||||||| ||| |||||||  | ||||||||||||||||||||| |||| ||||||| ||||||| |||||||||||| | ||||||||    
T  23328167 cactgtaagcacaatatccacaaccacccatcgtcactactcacccccaaagaacaccactcaaaa-taaaactcccagacttcaacacc 23328255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 295 - 355
Target Start/End: Original strand, 1652569 - 1652628
Alignment:
Q  295 tacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacc 355  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||||||  |||||||||    
T  1652569 tacaaactaaaggcgtcgtatataggcggaacacccg-aaataaacacccacaaagacacc 1652628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 358 - 462
Target Start/End: Original strand, 25594304 - 25594406
Alignment:
Q  358 tgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcact 457  Q
    |||||||||||| ||||| |||| |||||||  ||||||||  |||||||||| ||||||| ||||| ||| ||||||||||| | ||||||||| ||||    
T  25594304 tgaggacaacacccaccacaataaacatcactacctaaaacatactccttcac-aaaacgaccactgaaaaaacgatatccaa-accacccatcgccact 25594401  T
Q  458 actca 462  Q
    |||||    
T  25594402 actca 25594406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 238 - 349
Target Start/End: Original strand, 25594142 - 25594255
Alignment:
Q  238 aattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaaa 335  Q
    ||||||||| || || || ||| ||||||||||| ||||||||||||  | ||| | |||| |||  ||| ||| ||||||||||||||||||||||||     
T  25594142 aattttatttaaaaaccagatcactgctcaagacaaacagagatcggtgattcagagaataaaaataaaatgcgtcgtatataggcggaacacccgaaag 25594241  T
Q  336 taaacaccctaaaa 349  Q
    |||||||| |||||    
T  25594242 taaacaccataaaa 25594255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 378
Target Start/End: Complemental strand, 41039527 - 41039463
Alignment:
Q  313 tatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaa 378  Q
    ||||||||||||||||| ||||||||||||||||||| |||||  ||| |||||||| ||||||||    
T  41039527 tatataggcggaacaccagaaaataaacaccctaaaa-acacccgtgaagacaacacccaccaaaa 41039463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 382 - 509
Target Start/End: Complemental strand, 53248200 - 53248077
Alignment:
Q  382 acatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctc 481  Q
    |||||||| |||||||| ||||||   | |||||| ||||||||||||||| || ||| || | |||||||||||||||||||  ||| ||||| | |||    
T  53248200 acatcaccacctaaaacagactcc---aaaaaaacaagcactgtaaacacggtaaccaccaccgcccatcgtcactactcacccacaaagaaca-ctctc 53248105  T
Q  482 aaaattaaaactcccagtcctcaacacc 509  Q
    ||||| ||||||| ||| || |||||||    
T  53248104 aaaataaaaactctcagaccccaacacc 53248077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 400 - 464
Target Start/End: Original strand, 9583852 - 9583916
Alignment:
Q  400 gactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcacc 464  Q
    |||||||||| |||||| ||||| |||||||||||||||| || | || ||||||||||||||||    
T  9583852 gactccttcaaaaaaacaagcaccgtaaacacgatatccaccaccgcctatcgtcactactcacc 9583916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 442
Target Start/End: Complemental strand, 12086615 - 12086483
Alignment:
Q  310 ccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttca 409  Q
    ||||||| ||||||||||  |||||||||||| | ||||||| ||| |  | ||| |||| |||||||||| |||||||| |||||||| ||    ||||    
T  12086615 ccgtataaaggcggaacattcgaaaataaacatcttaaaagataccccctaagaccacacccaccaaaataaacatcaccacctaaaacagatgtattca 12086516  T
Q  410 caaaaacgagcactgtaaacacgatatccaaca 442  Q
      ||||||| ||||||||| ||||||| |||||    
T  12086515 agaaaacgatcactgtaaaaacgatattcaaca 12086483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 349
Target Start/End: Original strand, 823027 - 823143
Alignment:
Q  234 agcaaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccg 331  Q
    |||||||||||||||| || || ||| |||||||||||||||||||| ||  || ||| | | |||||  |||||||| |||||||| | |||||||||     
T  823027 agcaaattttattaaaaaaccagatcgctgctcaagacgaacagagaccggtgattcagagactacaagttaaaggcgtcgtatataaggggaacaccc- 823125  T
Q  332 aaaataaacaccctaaaa 349  Q
    ||| |||||||| |||||    
T  823126 aaattaaacaccataaaa 823143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 293 - 335
Target Start/End: Original strand, 14754974 - 14755016
Alignment:
Q  293 aatacaaactaaaggcgccgtatataggcggaacacccgaaaa 335  Q
    |||||||||||||||||||||| ||||||||||||||| ||||    
T  14754974 aatacaaactaaaggcgccgtacataggcggaacaccctaaaa 14755016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 412 - 478
Target Start/End: Complemental strand, 20612054 - 20611988
Alignment:
Q  412 aaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacaccc 478  Q
    ||||| ||||||||||||||  |||||| |||| |||||||||||||||||||  ||| ||||||||    
T  20612054 aaaacaagcactgtaaacacagtatccaccatcgcccatcgtcactactcacccacaaagaacaccc 20611988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 411 - 509
Target Start/End: Complemental strand, 47235971 - 47235875
Alignment:
Q  411 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacacc 509  Q
    |||||| ||||||||||||||| |||||| || |  ||||||||||||||||||  ||| ||||| ||||||||| |||||||| ||| || |||||||    
T  47235971 aaaaacaagcactgtaaacacggtatccaccaccgtccatcgtcactactcacccacaaagaaca-ccctcaaaa-taaaactcgcagaccccaacacc 47235875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 512
Target Start/End: Complemental strand, 14879708 - 14879607
Alignment:
Q  413 aaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacg---aacacccctcaaaattaaaactcccagtcctcaacacc 509  Q
    |||||| ||||| ||| ||||||||||||| ||| ||||||||||| ||||| | || |   |||||||||||||||| |||||||||| | | ||||||    
T  14879708 aaacgaccactgaaaaaacgatatccaacaccacacatcgtcactattcaccccgaaagaaaaacacccctcaaaatt-aaactcccagacttgaacacc 14879610  T
Q  510 aaa 512  Q
    |||    
T  14879609 aaa 14879607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 403
Target Start/End: Original strand, 1652648 - 1652691
Alignment:
Q  360 aggacaacactcaccaaaatatacatcaccgcctaaaactgact 403  Q
    |||||||||| |||||||||| |||||||| |||||||||||||    
T  1652648 aggacaacacccaccaaaataaacatcaccccctaaaactgact 1652691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 462
Target Start/End: Original strand, 30352249 - 30352300
Alignment:
Q  411 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactca 462  Q
    |||||| || |||||||||||| |||||| || |||||||||||||||||||    
T  30352249 aaaaacaagtactgtaaacacggtatccaccaccacccatcgtcactactca 30352300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 478
Target Start/End: Original strand, 34475564 - 34475631
Alignment:
Q  411 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacaccc 478  Q
    |||||| |||| |||||||||| |||||| || | |||||||||||||||||||  ||| ||||||||    
T  34475564 aaaaacaagcaatgtaaacacggtatccaccaccgcccatcgtcactactcacccacaaagaacaccc 34475631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 418 - 464
Target Start/End: Original strand, 2392321 - 2392367
Alignment:
Q  418 agcactgtaaacacgatatccaacatcacccatcgtcactactcacc 464  Q
    ||||||||||||||| |||||| || | |||||||||||||||||||    
T  2392321 agcactgtaaacacggtatccaccaccgcccatcgtcactactcacc 2392367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 418 - 464
Target Start/End: Original strand, 2394085 - 2394131
Alignment:
Q  418 agcactgtaaacacgatatccaacatcacccatcgtcactactcacc 464  Q
    ||||||||||||||| |||||| || | |||||||||||||||||||    
T  2394085 agcactgtaaacacggtatccaccaccgcccatcgtcactactcacc 2394131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 420 - 498
Target Start/End: Original strand, 40023389 - 40023466
Alignment:
Q  420 cactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccag 498  Q
    ||||||||||||| ||||||  | || |||||||||||||||| | | || |||| |||||||||| ||||||||||||    
T  40023389 cactgtaaacacggtatccacaaccatccatcgtcactactcatcccaaaagaacgcccctcaaaa-taaaactcccag 40023466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 418
Target Start/End: Complemental strand, 32010072 - 32010027
Alignment:
Q  373 ccaaaatatacatcaccgcctaaaactgactccttcacaaaaacga 418  Q
    |||||||| |||||||| |||||||| ||||||||||| |||||||    
T  32010072 ccaaaataaacatcaccacctaaaacagactccttcacgaaaacga 32010027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 478
Target Start/End: Complemental strand, 19176806 - 19176710
Alignment:
Q  382 acatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacaccc 478  Q
    |||| ||| |||||||| ||||||   | |||||| ||||| ||||||||  |||||| || || |||||||||||||||||| | || ||||||||    
T  19176806 acataaccacctaaaacagactccaaaaaaaaaacaagcacagtaaacacagtatccaccaccatccatcgtcactactcacccctaaagaacaccc 19176710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 410
Target Start/End: Complemental strand, 27399270 - 27399218
Alignment:
Q  358 tgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcac 410  Q
    |||||||||||| |||||||||| |||||| | |||||||| | |||||||||    
T  27399270 tgaggacaacacccaccaaaataaacatcatcacctaaaacaggctccttcac 27399218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 293 - 349
Target Start/End: Original strand, 37998900 - 37998956
Alignment:
Q  293 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaa 349  Q
    ||||||||| ||| | |||||||||||||||||   ||||||||||||||| |||||    
T  37998900 aatacaaacaaaatgtgccgtatataggcggaatgtccgaaaataaacaccttaaaa 37998956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 231 - 514
Target Start/End: Original strand, 16832646 - 16832933
Alignment:
Q  231 aacagcaaattttattaaa-caatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaaca 327  Q
    |||| |||||||||||||| ||| || | |||| |||||||| |||||| |||||  || |  | ||||||||| |||||||| | ||||||||||||||    
T  16832646 aacaacaaattttattaaaacaaccagaccccttctcaagacaaacagaaatcggtgaaactgagaatacaaacaaaaggcgctgcatataggcggaaca 16832745  T
Q  328 cccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcac-aaaaacgagcactgta 426  Q
    ||  |||||||||||||||||| || |  ||||||||||||| |||| ||||| || ||||| ||||||||  | |||| ||| |||||||| | |||||    
T  16832746 ccaaaaaataaacaccctaaaa-actctcctgaggacaacacccacc-aaataaacgtcaccacctaaaacatattcctgcacgaaaaacgaccgctgta 16832843  T
Q  427 aacacgatatccaacatcacccatcgtcactactcaccaccaacg----aacacccctcaaaattaaaactcccagtcctcaacaccaaagt 514  Q
    || | ||||||||||| ||||| ||||||||||||||| |||| |    |||||||||||||||| |||||| ||||| | |||||||||||    
T  16832844 aaaaagatatccaacaccacccgtcgtcactactcacc-ccaaagaaaaaacacccctcaaaatt-aaactcacagtcttgaacaccaaagt 16832933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 305 - 479
Target Start/End: Original strand, 19311069 - 19311242
Alignment:
Q  305 aggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactc 404  Q
    |||| ||||| |||||||||||| |||||| |||||||||||||| || || ||| ||| ||||| |||||||||| || ||||| ||  |||| || ||    
T  19311069 aggcaccgtaaataggcggaacatccgaaattaaacaccctaaaa-actcccctggggataacacccaccaaaatacacgtcaccaccataaacagattc 19311167  T
Q  405 cttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccc 479  Q
    |||||| ||||||||||||||||| |||||||||||||||  ||| ||||||| |||||| |||| ||| |||||    
T  19311168 cttcacgaaaacgagcactgtaaaaacgatatccaacatcctccaccgtcactgctcacccccaaagaatacccc 19311242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 294 - 464
Target Start/End: Complemental strand, 49747917 - 49747748
Alignment:
Q  294 atacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcct 393  Q
    |||||||| |||| |  |||||||| |||||||| || |||||||||||| ||||| ||||||||||||||||||| |||||||||  |  ||||| |||    
T  49747917 atacaaacaaaagacatcgtatatatgcggaacatccaaaaataaacaccataaaaaacacctctgaggacaacacccaccaaaattcatgtcaccacct 49747818  T
Q  394 aaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcacc 464  Q
    ||||| ||||| ||||| ||||||| || |||||| |||| |||||||| | ||||| |||||||||||||    
T  49747817 aaaacagactctttcacgaaaacgaccattgtaaaaacga-atccaacaccgcccattgtcactactcacc 49747748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 231 - 464
Target Start/End: Original strand, 41117595 - 41117827
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 328  Q
    |||| |||||||||||||||||  | ||| ||||||||||||||||||||  ||  ||    | | ||||||| | ||||  ||||||||||||||||||    
T  41117595 aacaacaaattttattaaacaactagatctctgctcaagacgaacagagacaggtgaaattgagactacaaacaagaggcatcgtatataggcggaacac 41117694  T
Q  329 ccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaa 428  Q
    ||||||||||||||||||||  |||||  |||||||||||| |||||||||| | |||||| |||| ||| ||||| | ||| ||||| | |  ||||||    
T  41117695 ccgaaaataaacaccctaaataacacc-atgaggacaacacccaccaaaatacatatcaccacctagaacagactcatgcacgaaaacaaccgttgtaaa 41117793  T
Q  429 cacgatatccaacatcacccatcgtcactactcacc 464  Q
     ||||||||||||  |||||||||||| ||||||||    
T  41117794 aacgatatccaac--cacccatcgtcattactcacc 41117827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 231 - 464
Target Start/End: Original strand, 38636861 - 38637093
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcggaatcaaaa----aatacaaactaaaggcgccgtatataggcggaac 326  Q
    |||||||||||||||||||||| ||  |||| | ||| |||||||||||| |||  | ||||    | ||||||| | ||||||||||| ||||||||||    
T  38636861 aacagcaaattttattaaacaaccaggtccccgttcaggacgaacagagaccgg--tgaaaatgagactacaaacaagaggcgccgtat-taggcggaac 38636957  T
Q  327 acccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgta 426  Q
    ||| ||||||||||||| ||||  | ||| | ||||||||||| ||| |||||| |  ||||| ||||||||  |||||||||| ||||| | | |||||    
T  38636958 acctgaaaataaacaccttaaataaaacccccgaggacaacacccacgaaaatacatgtcaccacctaaaacaaactccttcacgaaaacaaccgctgta 38637057  T
Q  427 aacacgatatccaacatcacccatcgtcactactcacc 464  Q
    || | ||||||||||  |||||||||||||||||||||    
T  38637058 aaaatgatatccaac--cacccatcgtcactactcacc 38637093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 234 - 514
Target Start/End: Original strand, 19814847 - 19815132
Alignment:
Q  234 agcaaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaact-aaaggcgccgtatataggcggaacaccc 330  Q
    ||||||||||||| ||||| || |||||||||||||||||||||||| ||   || || | | |||||||| |||||||  ||||||| || ||||||||    
T  19814847 agcaaattttatttaacaaccagatccctgctcaagacgaacagagaccgataaaacagagagtacaaactaaaaggcgttgtatataagcagaacaccc 19814946  T
Q  331 gaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcacc---gcctaaaactgactccttcacaaaaacgagcactgtaa 427  Q
     |||||||||| | |||||||||| |   |||||||||| |||||||| | || |||||    ||| |||| |||  |||||| |||| || ||| ||||    
T  19814947 aaaaataaacatcataaaagacactttcaaggacaacacccaccaaaaaacacgtcaccagtacctcaaacagacgtcttcacgaaaatgaccacggtaa 19815046  T
Q  428 acacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctcaacaccaaagt 514  Q
    | | ||||||||| | || || | ||||||||||||| |||| ||||||  ||||| ||| |||||| |||||||||||||||||||    
T  19815047 aaatgatatccaataccatccgttgtcactactcacccccaaagaacacttctcaagatt-aaactctcagtcctcaacaccaaagt 19815132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 311 - 463
Target Start/End: Original strand, 39420745 - 39420896
Alignment:
Q  311 cgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcac 410  Q
    |||||||||||||||||||||||||| |||||| ||||| ||||   |||| | ||||| |||||||||| || |||||  ||||||||||||||| |||    
T  39420745 cgtatataggcggaacacccgaaaatgaacaccataaaaaacactcatgagcataacac-caccaaaatacacgtcaccatctaaaactgactcctacac 39420843  T
Q  411 aaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcac 463  Q
     | ||| | ||| ||| | ||||||||||||| ||||| ||||||||||||||    
T  39420844 gagaacaaccaccgtataaacgatatccaacaccacccgtcgtcactactcac 39420896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 261 - 349
Target Start/End: Complemental strand, 28967299 - 28967209
Alignment:
Q  261 ctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaa 349  Q
    ||||||||||||||||||||||||  || || | ||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||    
T  28967299 ctgctcaagacgaacagagatcggtgaaacagataatacaaacgaaaggcgctgtatataggcggaacacctgaaaataaacaccctaaaa 28967209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 236 - 345
Target Start/End: Complemental strand, 42719605 - 42719494
Alignment:
Q  236 caaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaa 333  Q
    |||||||||||||||||||| |||||||||||||||||| ||||| ||  ||| |  | ||||||||| |||| ||||||||||| |||||| ||| |||    
T  42719605 caaattttattaaacaatcaaatccctgctcaagacgaatagagaccggtgaaactgagaatacaaacaaaagacgccgtatataagcggaaaacctgaa 42719506  T
Q  334 aataaacaccct 345  Q
    ||||||||||||    
T  42719505 aataaacaccct 42719494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 405 - 514
Target Start/End: Complemental strand, 19673377 - 19673269
Alignment:
Q  405 cttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctca 504  Q
    |||||| |||| || |||||||||  | |||||||||| || || ||||||||||||||| |||| |||||| |||||||||| |||||| |||||||||    
T  19673377 cttcacgaaaatgaccactgtaaaagcaatatccaacaccatccgtcgtcactactcacccccaaagaacactcctcaaaatt-aaactctcagtcctca 19673279  T
Q  505 acaccaaagt 514  Q
    ||||||||||    
T  19673278 acaccaaagt 19673269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 247 - 344
Target Start/End: Complemental strand, 48098744 - 48098645
Alignment:
Q  247 aaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccc 344  Q
    ||||||| | || |||||||||||||||| ||||||||  || |  ||||||||||| |||| ||| |||||||||||||||||||||||||||||||||    
T  48098744 aaacaattagattcctgctcaagacgaacggagatcggtgaaactgaaaatacaaacaaaagacgcagtatataggcggaacacccgaaaataaacaccc 48098645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 357 - 490
Target Start/End: Complemental strand, 25753500 - 25753364
Alignment:
Q  357 ctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcac 456  Q
    ||||||||||||| |||||||||| |  ||| | ||||||||  |||||||||| |||| |  |||||||||  || ||||||||||||  |||||||||    
T  25753500 ctgaggacaacacccaccaaaatacaagtcatcacctaaaacaaactccttcacgaaaagggccactgtaaaatcggtatccaacatcattcatcgtcac 25753401  T
Q  457 tactcaccaccaacg---aacacccctcaaaattaaa 490  Q
    |||||||| |||| |   |||||||||||||||||||    
T  25753400 tactcacccccaaagaaaaacacccctcaaaattaaa 25753364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 237 - 339
Target Start/End: Complemental strand, 35337013 - 35336914
Alignment:
Q  237 aaattttattaaacaatcacatccctgctcaagacgaacagagatcggaatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaaat 336  Q
    ||||||||||||  ||||| |||| ||| ||||||||||||||||| ||   ||||| ||||||| ||||||||||||||||| ||||||| ||||||||    
T  35337013 aaattttattaat-aatcagatccatgcacaagacgaacagagatcagat--aaaaagtacaaacaaaaggcgccgtatatagacggaacatccgaaaat 35336917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 420 - 486
Target Start/End: Original strand, 31050478 - 31050544
Alignment:
Q  420 cactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaat 486  Q
    |||||||||||| | ||||| ||||| |||||||||||||||||| |||| ||||||||||||||||    
T  31050478 cactgtaaacacaacatccaccatcatccatcgtcactactcacccccaaggaacacccctcaaaat 31050544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 376 - 514
Target Start/End: Complemental strand, 48098641 - 48098502
Alignment:
Q  376 aaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacga--- 472  Q
    ||||| || ||||| ||||||||  |||| ||||||||||||| ||||||||| |||||||||| ||  |||| ||||||||||||||| |||| ||       
T  48098641 aaatacacgtcaccacctaaaac--actctttcacaaaaacgaccactgtaaaaacgatatccatcacaacccgtcgtcactactcacccccaaagaaaa 48098544  T
Q  473 -acacccctcaaaattaaaactcccagtcctcaacaccaaagt 514  Q
     |||||||| |||| | |||||||||||| | |||||||||||    
T  48098543 tacacccctaaaaaat-aaactcccagtcttaaacaccaaagt 48098502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 293 - 469
Target Start/End: Original strand, 22810864 - 22811025
Alignment:
Q  293 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcc 392  Q
    ||||||||| |||||||||||||||| |||||| | |||||| |||||||||||            ||||||  ||| |||||||||| || ||||| ||    
T  22810864 aatacaaac-aaaggcgccgtatataagcggaatatccgaaagtaaacacccta------------gaggacctcacccaccaaaatacacgtcacctcc 22810950  T
Q  393 taaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaa 469  Q
    |||||| |||| |||||| ||| ||| ||||||||| ||||||||| ||  || |||||||||||||||||| ||||    
T  22810951 taaaacagactgcttcacgaaaccgaccactgtaaaaacgatatcctac--catccatcgtcactactcacccccaa 22811025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 231 - 319
Target Start/End: Complemental strand, 9262897 - 9262807
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatatag 319  Q
    |||||||||||||||||||||| || ||||| |||||||||||||| ||| ||  ||| |  | ||||||||| |||||||||||||||||    
T  9262897 aacagcaaattttattaaacaaccaaatccccgctcaagacgaacaaagaccgatgaaactgagaatacaaacaaaaggcgccgtatatag 9262807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 329
Target Start/End: Original strand, 21983504 - 21983601
Alignment:
Q  233 cagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacacc 329  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||| ||  |||  | |||||| |||  ||| ||||| |||||||||||||||||    
T  21983504 cagcaaattttattaaa-aatcagatccctgctcaagacgaacagagaccgatgaaatagaaaatataaatgaaaagcgccatatataggcggaacacc 21983601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 231 - 335
Target Start/End: Complemental strand, 52009279 - 52009173
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 328  Q
    |||||||||||||||||||| | || |||||||| ||||||||| ||||||||  ||| |  |  || |||||  |||||||||||||||||||||||||    
T  52009279 aacagcaaattttattaaactaccagatccctgcccaagacgaatagagatcggtgaaactgagcatgcaaacataaggcgccgtatataggcggaacac 52009180  T
Q  329 ccgaaaa 335  Q
    || ||||    
T  52009179 cctaaaa 52009173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 464
Target Start/End: Original strand, 53823151 - 53823281
Alignment:
Q  331 gaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaaca 430  Q
    ||||||||||||||||||| | ||| ||||||| ||||| |||||||||| || ||| | ||   ||| |||||||||||||||| |  |||  |||| |    
T  53823151 gaaaataaacaccctaaaaaatacccctgaggataacacccaccaaaatacacgtcatcacc---aacagactccttcacaaaaatgtccaccataaaaa 53823247  T
Q  431 cgatatccaacatcacccatcgtcactactcacc 464  Q
    |||||||| ||| |||||| || |||||||||||    
T  53823248 cgatatcccacaccacccaccgacactactcacc 53823281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 293 - 342
Target Start/End: Complemental strand, 46487670 - 46487621
Alignment:
Q  293 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacac 342  Q
    ||||||||||||||||  ||||||||||||||||| ||||||||||||||    
T  46487670 aatacaaactaaaggcatcgtatataggcggaacatccgaaaataaacac 46487621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 404 - 512
Target Start/End: Original strand, 35341141 - 35341247
Alignment:
Q  404 ccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagtcctc 503  Q
    |||| |||||||| | ||||||||||||  |||||   | ||||||||||||||||||||| |||  ||||||||||||||| |||||||||||  | ||    
T  35341141 ccttaacaaaaacaaacactgtaaacacagtatccgcaaccacccatcgtcactactcacc-ccagagaacacccctcaaaa-taaaactcccaaacttc 35341238  T
Q  504 aacaccaaa 512  Q
    |||||||||    
T  35341239 aacaccaaa 35341247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 406
Target Start/End: Original strand, 43373864 - 43373910
Alignment:
Q  360 aggacaacactcaccaaaatatacatcaccgcctaaaactgactcct 406  Q
    |||||||||| |||||||||| |||||||| ||||||||||||||||    
T  43373864 aggacaacacccaccaaaataaacatcaccccctaaaactgactcct 43373910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 397
Target Start/End: Original strand, 2061464 - 2061627
Alignment:
Q  236 caaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaa 333  Q
    |||||||||||||||| ||| |||||||| ||||||||||||| |  |  ||| |  | ||||||||| | |||    |||||||||||||||| | ||     
T  2061464 caaattttattaaacagtcagatccctgcccaagacgaacagaaactgatgaaactgagaatacaaacaagaggtcttgtatataggcggaacatctgat 2061563  T
Q  334 aataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcctaaaa 397  Q
    ||||||||| |||||| | ||| |||||| |||||| || ||||||| |  ||||| |||||||    
T  2061564 aataaacacactaaaaaatacccctgagggcaacacccatcaaaatacaagtcaccacctaaaa 2061627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 360
Target Start/End: Complemental strand, 25754265 - 25754199
Alignment:
Q  293 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctga 360  Q
    ||||||||  ||| ||||||||||||| ||||||| | ||||||||||||| ||||| ||||||||||    
T  25754265 aatacaaataaaaagcgccgtatatagacggaacatctgaaaataaacaccataaaa-acacctctga 25754199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 38930177 - 38930122
Alignment:
Q  295 tacaaactaaaggcgccgtatataggcggaacacccg-aaaataaacaccctaaaa 349  Q
    ||||||| ||||| |||||||||||| |||||||||| |||||||||||| |||||    
T  38930177 tacaaacgaaaggagccgtatataggtggaacacccgaaaaataaacaccataaaa 38930122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 337
Target Start/End: Original strand, 20632128 - 20632233
Alignment:
Q  235 gcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaa-ggcgccgtatataggcggaacacccg 331  Q
    |||||||||||| || || || || |||||| ||||||||| |||| |||  | ||| | ||||||||||||| ||||  |||||||||||||| |||||    
T  20632128 gcaaattttatttaaaaaacagattcctgcttaagacgaactgagaccggtgattcagagaatacaaactaaaaggcgttgtatataggcggaatacccg 20632227  T
Q  332 aaaata 337  Q
    ||||||    
T  20632228 aaaata 20632233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 293 - 339
Target Start/End: Original strand, 35947998 - 35948044
Alignment:
Q  293 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaa 339  Q
    ||||||||| |||| |||| |||||| ||||||||||||||||||||    
T  35947998 aatacaaacaaaagacgccatatataagcggaacacccgaaaataaa 35948044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 478
Target Start/End: Complemental strand, 20464869 - 20464796
Alignment:
Q  405 cttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacaccc 478  Q
    ||||| |||||| | | ||||||||||| |||||| || | ||||||||||||||||||| ||||  |||||||    
T  20464869 cttcaaaaaaacaaaccctgtaaacacggtatccaccaccgcccatcgtcactactcacccccaaataacaccc 20464796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 295 - 335
Target Start/End: Complemental strand, 19432426 - 19432386
Alignment:
Q  295 tacaaactaaaggcgccgtatataggcggaacacccgaaaa 335  Q
    ||||||| ||||||||||||||||| ||||||| |||||||    
T  19432426 tacaaacaaaaggcgccgtatatagacggaacatccgaaaa 19432386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 419 - 499
Target Start/End: Complemental strand, 30964702 - 30964624
Alignment:
Q  419 gcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactcccagt 499  Q
    |||||||||| ||||||| || || | |||||| ||||||||||||  ||| ||||| ||||||||| |||||||||||||    
T  30964702 gcactgtaaatacgatattcaccaccgcccatcatcactactcacccacaaagaaca-ccctcaaaa-taaaactcccagt 30964624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 163
Target Start/End: Original strand, 32174341 - 32174373
Alignment:
Q  131 taaatttcatacactcattcaacatcatatttt 163  Q
    |||||||||||||||||||||||||| ||||||    
T  32174341 taaatttcatacactcattcaacatcttatttt 32174373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 295 - 335
Target Start/End: Original strand, 43373784 - 43373824
Alignment:
Q  295 tacaaactaaaggcgccgtatataggcggaacacccgaaaa 335  Q
    |||||||||||||||  ||||||||||| ||||||||||||    
T  43373784 tacaaactaaaggcgttgtatataggcgaaacacccgaaaa 43373824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1384 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: scaffold1384
Description:

Target: scaffold1384; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 298 - 469
Target Start/End: Original strand, 1347 - 1522
Alignment:
Q  298 aaactaaaggcgccgtatataggcggaacacccgaaaa-taaacaccctaaaagacacctctgaggacaaca---ctcaccaaaatatacatcaccgcct 393  Q
    |||| ||||||||||||||||||| ||||||||||||| |||||||| ||||| ||||| || |||||||||   | ||| |||||| || ||||| |||    
T  1347 aaacaaaaggcgccgtatataggcagaacacccgaaaaataaacaccataaaaaacacccctaaggacaacaaaacccacaaaaatacacgtcaccacct 1446  T
Q  394 aaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaa 469  Q
    ||||||||||||| ||| | ||| | ||||||||| ||||||||||||| ||| | ||||||||||| ||| ||||    
T  1447 aaaactgactcctacacgagaacaaccactgtaaaaacgatatccaacaccacacgtcgtcactactgacccccaa 1522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 257 - 513
Target Start/End: Complemental strand, 58556 - 58297
Alignment:
Q  257 atccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacac 354  Q
    |||||||||||||||||| ||||| |||  || || | |||| |||| ||||||||||||||||||  |||||||| |||||||| ||||||||| ||||    
T  58556 atccctgctcaagacgaaaagagaccggtgaaacagataatagaaacaaaaggcgccgtatataggtagaacacccaaaaataaataccctaaaa-acac 58458  T
Q  355 ctctgaggacaacactca-ccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgt 453  Q
    |  |||| ||| || ||| ||||| || |||||||| || ||||| ||||||||||| ||||||| || ||||||   |||||||||||  |||| ||||    
T  58457 ccatgagaacacca-tcagccaaagtacacatcaccaccaaaaacagactccttcacgaaaacgaccattgtaaaactgatatccaacactacccgtcgt 58359  T
Q  454 cactactcaccaccaacg---aacacccctcaaaattaaaactcccagtcctcaacaccaaag 513  Q
    ||||||||||  |||| |   ||||| |||||||||| |||||| ||||||  ||||||||||    
T  58358 cactactcacacccaaagaacaacactcctcaaaatt-aaactctcagtcccgaacaccaaag 58297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 231 - 349
Target Start/End: Original strand, 3880239 - 3880359
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacac 328  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||| ||  ||| |  ||||||||||| |||||  ||||||||| |||||||||    
T  3880239 aacaacaaattttattaaacaatcagatccctgctcaagacgaacagagaccggtgaaactgaaaatacaaacaaaaggttccgtatataagcggaacac 3880338  T
Q  329 ccgaaaataaacaccctaaaa 349  Q
    |  ||||||||||||||||||    
T  3880339 caaaaaataaacaccctaaaa 3880359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 293 - 514
Target Start/End: Original strand, 15120293 - 15120508
Alignment:
Q  293 aatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccgcc 392  Q
    |||||||||||||| || ||||| ||||| ||||| | || |||||||||||||||| ||| |  |||||||||||  |||||||||| |||||||| ||    
T  15120293 aatacaaactaaagacgacgtatgtaggcagaacatctgacaataaacaccctaaaaaacatccatgaggacaacatccaccaaaatacacatcaccacc 15120392  T
Q  393 taaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaac 492  Q
    |||||| ||||| ||||||||||  |  ||| |    || |||||||||| || ||||||||||||||||||  |||  |||| |||| |||||| ||||    
T  15120393 taaaacagactcattcacaaaaa-aacgacttt----acaatatccaacaccatccatcgtcactactcaccctcaagaaacatccctaaaaatt-aaac 15120486  T
Q  493 tcccagtcctcaacaccaaagt 514  Q
     | |||||||||||||||||||    
T  15120487 ccgcagtcctcaacaccaaagt 15120508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 236 - 469
Target Start/End: Original strand, 20701430 - 20701667
Alignment:
Q  236 caaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaa 333  Q
    ||||||||||||||||| || |||||| |||||||||||||||||||||  || |  | ||||||||| |||||||| |||||||||||||||||| | |    
T  20701430 caaattttattaaacaaccaaatccct-ctcaagacgaacagagatcggtgaaactgagaatacaaacaaaaggcgctgtatataggcggaacacctgga 20701528  T
Q  334 aataaacaccctaaaagacacctctgaggacaacactcaccaa-----aatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaa 428  Q
    ||||||||| |||||  |||||   ||||||||||| || |||     || | || ||||| |||| ||| ||| | ||||| ||| | | |||||||||    
T  20701529 aataaacacactaaa--acacccacgaggacaacacccatcaaaccctaaaacacttcaccacctataacagacccattcacgaaagcaaccactgtaaa 20701626  T
Q  429 cacgatatccaacatcacccatcgtcactactcaccaccaa 469  Q
     ||||||||||| |  |||||||||||||||||||| ||||    
T  20701627 aacgatatccaatactacccatcgtcactactcacccccaa 20701667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 235 - 355
Target Start/End: Original strand, 17278093 - 17278215
Alignment:
Q  235 gcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccga 332  Q
    |||||||||||| || || || ||| ||||| |||| ||||||||| |||  | ||| | ||||||| ||||||||| ||||||||||||||||||||||    
T  17278093 gcaaattttatttaaaaaccagatcgctgcttaagatgaacagagaccggtgattcagagaatacaatctaaaggcgtcgtatataggcggaacacccga 17278192  T
Q  333 aaataaacaccctaaaagacacc 355  Q
    ||||||||| | |||||||||||    
T  17278193 aaataaacatcataaaagacacc 17278215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 234 - 367
Target Start/End: Complemental strand, 6860484 - 6860348
Alignment:
Q  234 agcaaattttattaaacaatcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatatagg--cggaacacc 329  Q
    |||| ||||||||||||||  | |||||||||||||| ||| | |||||||  || | || ||||||||| |||| |||||||||||||  |||||||||    
T  6860484 agcatattttattaaacaactagatccctgctcaagatgaatatagatcggtgaaactaagaatacaaacaaaagacgccgtatataggggcggaacacc 6860385  T
Q  330 cgaaaataaacaccctaaaagacacctctgaggacaac 367  Q
    | |||||||||||||||||| |||||| || |||||||    
T  6860384 caaaaataaacaccctaaaa-acacctatgcggacaac 6860348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 233 - 329
Target Start/End: Original strand, 16180486 - 16180583
Alignment:
Q  233 cagcaaattttattaaacaatcacatccctgctcaagacgaacagagatcg--gaatcaaaaaatacaaactaaaggcgccgtatataggcggaacacc 329  Q
    ||||||||||||||||| ||||| ||| |||||||||||||||| ||||||  ||| || | ||||||||  |||| | ||||||||| ||||||||||    
T  16180486 cagcaaattttattaaa-aatcagatctctgctcaagacgaacaaagatcggtgaaacagataatacaaatgaaagacaccgtatataagcggaacacc 16180583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 291 - 406
Target Start/End: Original strand, 26215711 - 26215826
Alignment:
Q  291 aaaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagacacctctgaggacaacactcaccaaaatatacatcaccg 390  Q
    |||||||||| ||||||| | ||||||| ||||| |||| ||||| |||||||   ||||| ||| | | || |||||| |||||||||| ||| ||||     
T  26215711 aaaatacaaattaaaggcactgtatatatgcggaccacctgaaaacaaacaccaataaagataccccagcggtcaacacccaccaaaataaacaacaccc 26215810  T
Q  391 cctaaaactgactcct 406  Q
    ||||||||||| ||||    
T  26215811 cctaaaactgattcct 26215826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 335
Target Start/End: Complemental strand, 12794505 - 12794465
Alignment:
Q  295 tacaaactaaaggcgccgtatataggcggaacacccgaaaa 335  Q
    ||||||||||||||||||||||||| ||||||| |||||||    
T  12794505 tacaaactaaaggcgccgtatatagacggaacatccgaaaa 12794465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 497
Target Start/End: Complemental strand, 14663343 - 14663266
Alignment:
Q  418 agcactgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacgaacacccctcaaaattaaaactccca 497  Q
    |||||||||||||| ||||||| || | |||||||||||||||||||  ||| |||||  |||||||| |||||||||||    
T  14663343 agcactgtaaacacaatatccaccaccgcccatcgtcactactcacccgcaaagaaca-tcctcaaaa-taaaactccca 14663266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 354
Target Start/End: Complemental strand, 20500323 - 20500282
Alignment:
Q  312 gtatataggcggaacacccgaaaataaacaccctaaaagacac 354  Q
    ||||||||||||||||||| |||||||||||| ||||||||||    
T  20500323 gtatataggcggaacaccc-aaaataaacaccataaaagacac 20500282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 351
Target Start/End: Complemental strand, 34101639 - 34101520
Alignment:
Q  234 agcaaattttattaaacaa-tcacatccctgctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacaccc 330  Q
    |||||| |||||||||||| ||| |||| |||||||||| |||  | |||||  ||||||| | |||||| ||||   | || |||||||||||||||||    
T  34101639 agcaaaatttattaaacaaatcagatccttgctcaagacaaaccaaaatcggtgaatcaaagactacaaattaaaattgtcgaatataggcggaacaccc 34101540  T
Q  331 gaaaataaacaccctaaaaga 351  Q
     |||||||||||| |||||||    
T  34101539 -aaaataaacaccataaaaga 34101520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 423 - 513
Target Start/End: Complemental strand, 13423716 - 13423622
Alignment:
Q  423 tgtaaacacgatatccaacatcacccatcgtcactactcaccaccaacg-aacacccctca---aaattaaaactcccagtcctcaacaccaaag 513  Q
    |||||| |||| |||| ||| |||||||| |||||||||||| |||| | |||||||||||   ||| | ||||||  |||||||||||||||||    
T  13423716 tgtaaaaacgacatcccacaacacccatcttcactactcacccccaatgaaacacccctcagtcaaaattaaactctaagtcctcaacaccaaag 13423622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 295 - 335
Target Start/End: Original strand, 26534424 - 26534464
Alignment:
Q  295 tacaaactaaaggcgccgtatataggcggaacacccgaaaa 335  Q
    ||||||| ||||||| ||||||||||||||||||| |||||    
T  26534424 tacaaacaaaaggcgtcgtatataggcggaacacctgaaaa 26534464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 263 - 353
Target Start/End: Original strand, 654 - 746
Alignment:
Q  263 gctcaagacgaacagagatcgg--aatcaaaaaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaagaca 353  Q
    |||||||||||||| ||||| |  | ||| | |||||||||||||| || |||||||| | |||||||||||||||||||||| |||||||||    
T  654 gctcaagacgaacaaagatccgtgattcagagaatacaaactaaagacgtcgtatatatgtggaacacccgaaaataaacaccataaaagaca 746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 486
Target Start/End: Original strand, 790 - 916
Alignment:
Q  358 tgaggacaacactcaccaaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcact 457  Q
    |||||||||||  |||||||||| |||||||| |||||||| ||||| |||||   || || ||||| ||| ||||||||||  | ||| ||||||||||    
T  790 tgaggacaacatacaccaaaataaacatcaccacctaaaacagactctttcac-ggaatgatcactggaaa-acgatatccataaccactcatcgtcact 887  T
Q  458 actcaccaccaacg-aacacccctcaaaat 486  Q
    ||||| | |||||| |||||||||| ||||    
T  888 actcatc-ccaacgtaacacccctctaaat 916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 375 - 461
Target Start/End: Complemental strand, 19687 - 19603
Alignment:
Q  375 aaaatatacatcaccgcctaaaactgactccttcacaaaaacgagcactgtaaacacgatatccaacatcacccatcgtcactactc 461  Q
    |||||| |||||||| ||||||||  |||||||| ||||||||| | || |||| ||||||||||||  ||| ||||||||||||||    
T  19687 aaaatacacatcaccacctaaaacaaactccttctcaaaaacgacctctataaaaacgatatccaac--cacacatcgtcactactc 19603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 280
Target Start/End: Original strand, 426555 - 426604
Alignment:
Q  231 aacagcaaattttattaaacaatcacatccctgctcaagacgaacagaga 280  Q
    |||||||||||||||| || ||||| |||||| |||||||||| ||||||    
T  426555 aacagcaaattttatttaaaaatcagatccctactcaagacgatcagaga 426604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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