View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9605_low_3 (Length: 235)
Name: NF9605_low_3
Description: NF9605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9605_low_3 |
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| [»] scaffold0735 (2 HSPs) |
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Alignment Details
Target: scaffold0735 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0735
Description:
Target: scaffold0735; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 5403 - 5465
Alignment:
| Q |
1 |
ttactgagttctctaaattctgtgcaactttcctttttactattatttatagcattcttttcg |
63 |
Q |
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| T |
5403 |
ttactgagttctctaaattctgtgcaactttcctttttactattatttatagcattcttttcg |
5465 |
T |
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Target: scaffold0735; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 5494 - 5547
Alignment:
| Q |
166 |
ttcatatattttcataaaaatttactattttaaatctttaatgaacgtcttatg |
219 |
Q |
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| T |
5494 |
ttcatatattttcataaaaatttactattttaaatctttaatgaacgtcttatg |
5547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 42923671 - 42923733
Alignment:
| Q |
1 |
ttactgagttctctaaattctgtgcaactttcctttttactattatttatagcattcttttcg |
63 |
Q |
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| T |
42923671 |
ttactgagttctctaaattctgtgcaactttcctttttactattatttatagcattcttttcg |
42923733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 166 - 219
Target Start/End: Original strand, 42923762 - 42923815
Alignment:
| Q |
166 |
ttcatatattttcataaaaatttactattttaaatctttaatgaacgtcttatg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42923762 |
ttcatatattttcataaaaatttactattttaaatctttaatgaacgtcttatg |
42923815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 154
Target Start/End: Original strand, 5657055 - 5657118
Alignment:
| Q |
91 |
cactctttaaaatttctaaataaagaagttatttattcaaaaagtttaataattcaattttcaa |
154 |
Q |
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||||||||||| ||| |||||||||||||||||| ||||||||||| || |||| |||||||| |
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| T |
5657055 |
cactctttaaagtttttaaataaagaagttattttttcaaaaagttaaacaatttcattttcaa |
5657118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 44461649 - 44461682
Alignment:
| Q |
173 |
attttcataaaaatttactattttaaatctttaa |
206 |
Q |
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||||||||||||||||||||||| |||||||||| |
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| T |
44461649 |
attttcataaaaatttactatttaaaatctttaa |
44461682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 150
Target Start/End: Original strand, 37348347 - 37348415
Alignment:
| Q |
82 |
tctttaggtcactctttaaaatttctaaataaagaagttatttattcaaaaagtttaataattcaattt |
150 |
Q |
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|||||| ||||| |||||| ||| |||||||| || ||||| ||||||||| || ||||||||||||| |
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| T |
37348347 |
tctttaagtcacactttaaggtttttaaataaaaaatttattcattcaaaaaattaaataattcaattt |
37348415 |
T |
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