View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9606_high_1 (Length: 447)
Name: NF9606_high_1
Description: NF9606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9606_high_1 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 8910423 - 8910021
Alignment:
| Q |
1 |
taataaaatttataaagatgattgggatcatgatatgtatgcaacacttagagctggtccattcattgaagcataatgaaattatgggtaaggccatatt |
100 |
Q |
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| T |
8910423 |
taataaaatttataaagatgattgggatcatgatatgtatgcaacacttagagttggtccattcattgaagcataatgaaattatgggtaaggccatatt |
8910324 |
T |
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| Q |
101 |
ctttgttgattcaaatttttcgtccaaatactaacgagggttgagtcaaacagaaaggttaattattcctccagtgtggcgaaccacgggttgaactttg |
200 |
Q |
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| T |
8910323 |
ctttgttgattcaaatttttcgtccaaatactaacgagggttgagtcaaacagaaaggtta----ttcctccagtgtggcgaaccacgagttgaactttg |
8910228 |
T |
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| Q |
201 |
ttgatagagacatatacgttcattgtgtgacgctttcttgagcaagattgactccgtatgagaagaccaatgagttcatccaaaataagtttcatccaaa |
300 |
Q |
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| T |
8910227 |
tcgatagagacatatacgttcattgtgtgacgctttcttgagcaagattgactccgtatgagaagaccaatgagttcatccaaaataagtttcatccaaa |
8910128 |
T |
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| Q |
301 |
tatttgaattaataccactgatctttgtaaatcttgttcaactgatttgagctaagagttaaagaagttgaaaaagttaatgattcaaggttcaaaccct |
400 |
Q |
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| T |
8910127 |
tatttgaattaataccactgatctttgtaaatcttgttcaactgatttgagctaagagttaaagaagttgaaaaagttaatgattcaaggttcaaaccct |
8910028 |
T |
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| Q |
401 |
agtgaag |
407 |
Q |
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| T |
8910027 |
agtgaag |
8910021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 380
Target Start/End: Original strand, 15165256 - 15165298
Alignment:
| Q |
338 |
tcaactgatttgagctaagagttaaagaagttgaaaaagttaa |
380 |
Q |
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| T |
15165256 |
tcaactgatttgagcttagagttaacgaagttgaaagagttaa |
15165298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 365
Target Start/End: Complemental strand, 11660575 - 11660546
Alignment:
| Q |
336 |
gttcaactgatttgagctaagagttaaaga |
365 |
Q |
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| T |
11660575 |
gttcaactgatttgagctaagagttaaaga |
11660546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 415 - 447
Target Start/End: Original strand, 32177756 - 32177788
Alignment:
| Q |
415 |
gatgctaggcttaggaatggtgtgagatgaccc |
447 |
Q |
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| T |
32177756 |
gatgctagtcttaggaatggtgtgagatgaccc |
32177788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 415 - 447
Target Start/End: Original strand, 32184917 - 32184949
Alignment:
| Q |
415 |
gatgctaggcttaggaatggtgtgagatgaccc |
447 |
Q |
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| T |
32184917 |
gatgctagtcttaggaatggtgtgagatgaccc |
32184949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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