View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9606_low_1 (Length: 711)
Name: NF9606_low_1
Description: NF9606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9606_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 656; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 656; E-Value: 0
Query Start/End: Original strand, 18 - 701
Target Start/End: Complemental strand, 44715149 - 44714466
Alignment:
| Q |
18 |
gataggactagcttgcttttgcctggacatcaacaagatcttgtttcaaaggtggcagctgcatcaaagggaccaactattttggttttgatgtctggtg |
117 |
Q |
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| T |
44715149 |
gataggactagcttgcttttgcctggacatcaacaagatcttgtttcaaaggtggcagctgcatcaaagggaccaactattttggttttgatgtctggtg |
44715050 |
T |
|
| Q |
118 |
ggcctgtggacattacttttgcaaagaatgaccccaaagttgctggcatattgtgggcgggttatccaggccaagctggtggtgctgcaattgctgacat |
217 |
Q |
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| T |
44715049 |
ggcctgtggacattacttttgcaaagaatgaccccaaagttgctggcatattgtgggcgggttatccaggccaagctggtggtgctgcaattgctgacat |
44714950 |
T |
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| Q |
218 |
tttatttggaactgctagcccaggtttgtcataaaacttgaaaaaattgaatgaattgccaattgcaaatagcctataaactaatacgattattacacta |
317 |
Q |
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| T |
44714949 |
tttatttggaactgctagcccaggtttgtcataaaacttgaaaaaattgaatgaattcccaattgcaaatagcctataaactaatacaattattacacta |
44714850 |
T |
|
| Q |
318 |
ttgtgttttactatcaggaggcaagctaccagtgacatggtacccacaagagtacctaaaaacctttgccatgacaaatatggcaatgagaccaagcaaa |
417 |
Q |
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| T |
44714849 |
ttgtgttttactatcaggaggcaagctaccagtgacatggtacccacaagagtacctaaaaaacttggccatgacaaatatggcaatgagaccaagcaaa |
44714750 |
T |
|
| Q |
418 |
atagggtacccaggaagaacgtatagattctacaagggaccagttgtatatccatttggacatggattaacatacacacattttgttcacgaattatcta |
517 |
Q |
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| T |
44714749 |
atagggtacccaggaagaacatatagattctacaagggaccagttgtatatccatttggacatggattaacatacacacattttgttcacgaattatcta |
44714650 |
T |
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| Q |
518 |
gtgcacccacggtggtgtcagttccggtccatggtcaccgacatggcaacaacacaaacatttcaaacaaagcaattagagtgacacatgcaagatgtgg |
617 |
Q |
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| T |
44714649 |
gtgcacccacagtggtgtcagttccagtccatggtcaccgacatggcaacaacacaaacatttcaaacaaagcaattagagtgacacatgcaagatgtgg |
44714550 |
T |
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| Q |
618 |
caaactctcaattgcccttcacgttgatgtaaaaaatgtgggatctagagatggcactcacaccttgttagtgttctctgctcc |
701 |
Q |
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| T |
44714549 |
caaactctcaattgcccttcacgttgatgtaaaaaatgtgggatctagagatggcactcacaccttgttagtgttctctgctcc |
44714466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 8e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 39090269 - 39090498
Alignment:
| Q |
17 |
agataggactagcttgcttttgcctggacatcaacaagatcttgtttcaaaggtggcagctgcatcaaagggaccaactattttggttttgatgtctggt |
116 |
Q |
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| T |
39090269 |
agataggactggtttacttcttcctggacatcaacaagaccttgtttcaaaggtagcggctgcctcgagaggcccaaccattttggtcttaatgtctggt |
39090368 |
T |
|
| Q |
117 |
gggcctgtggacattacttttgcaaagaatgaccccaaagttgctggcatattgtgggcgggttatccaggccaagctggtggtgctgcaattgctgaca |
216 |
Q |
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| T |
39090369 |
gggcctatagatataacttttgcaaagaatgatcctcgaattatgggcattttgtgggctggttatcctggtcaagccggtggtgctgccattgcggata |
39090468 |
T |
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| Q |
217 |
ttttatttggaactgctagcccaggtttgt |
246 |
Q |
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| T |
39090469 |
tattgtttggaaccactaacccaggtttgt |
39090498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 331 - 695
Target Start/End: Original strand, 39090935 - 39091296
Alignment:
| Q |
331 |
tcaggaggcaagctaccagtgacatggtacccacaagagtacctaaaaacctttgccatgacaaatatggcaatgagaccaagcaaa---atagggtacc |
427 |
Q |
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||||||| |||||||| |||||||||||||||||| ||||| |||| ||| || ||||||||||||||||||||||||||| | | |||||||| |
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| T |
39090935 |
tcaggagctaagctacctatgacatggtacccacaaggttacctcaaaaacttggcaatgacaaatatggcaatgagaccaagctcatccacagggtacc |
39091034 |
T |
|
| Q |
428 |
caggaagaacgtatagattctacaagggaccagttgtatatccatttggacatggattaacatacacacattttgttcacgaattatctagtgcacccac |
527 |
Q |
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| T |
39091035 |
ctgggagaacctatcgtttttacaacggccctgtggtatatccatttggttacggattatcttacacaaactttgttcacacattagctagtgcaccaaa |
39091134 |
T |
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| Q |
528 |
ggtggtgtcagttccggtccatggtcaccgacatggcaacaacacaaacatttcaaacaaagcaattagagtgacacatgcaagatgtggcaaactctca |
627 |
Q |
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| T |
39091135 |
agtggtgtcagttccagtagacggacaccgccgtggaaacagctcaaaca----aagc--agcaattagagtgacacatgcacgatgtggcaagctttca |
39091228 |
T |
|
| Q |
628 |
attgcccttcacgttgatgtaaaaaatgtgggatctagagatggcactcacaccttgttagtgttctc |
695 |
Q |
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||| ||| || ||||||| ||||| || || || | |||||| ||| |||| ||||| |||||||| |
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| T |
39091229 |
attagacttgacattgatgttaaaaacgttggttcaaaagatggtactaacactttgttggtgttctc |
39091296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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