View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9606_low_13 (Length: 285)
Name: NF9606_low_13
Description: NF9606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9606_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 8678480 - 8678745
Alignment:
| Q |
1 |
tgtgtttgtttctctcatattaaatcaaggtagataaattgagaaaattcaaactccaatcttttttaatctcagacacaaaaattaaataaatttttct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8678480 |
tgtgtttgtttctctcatattaaatcaaggtagataaattgagaaaattcaaactccaatcttttttaatctcagaaacaaaaattaaataaatttttct |
8678579 |
T |
|
| Q |
101 |
tgtgatgatgacataaagatttaatctgagaattatgaatgactcactctattgttagaagtgagctcaaatcagagggatatacctaatgaatttatgt |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8678580 |
tgtgatgatgatataaagatttaatctgagaattatgaatgactcactctgttgttagaagtgagctcaaatcagagggatatacctaatgaatttatgt |
8678679 |
T |
|
| Q |
201 |
gctattagattgtacatcaaagttaagacaattaaccatgtgttcatggacggtcaatatgctaga |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8678680 |
gctattagattgtacatcaaagttaagacaattaaccatgtgatcatggacggtcaatatgctaga |
8678745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 3 - 260
Target Start/End: Original strand, 8724597 - 8724854
Alignment:
| Q |
3 |
tgtttgtttctctcatattaaatcaaggtagataaattgagaaaattcaaactccaatcttttttaatctcagacacaaaaattaaataaatttttcttg |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||| |||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
8724597 |
tgtttgtttctctcatattaaatcaaggtagataaatcgagcaaattcaaacttcaaa-ttttttaatctc-gacataaaaattaaataaatttttcttc |
8724694 |
T |
|
| Q |
103 |
tgatgatgacataaagatttaatctg-agaattatgaatgactcactctattgttagaagtgagctcaaatcagaggg-atatacctaatgaatttatgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||||| |||||||||||||| |||||||||| |||||||||| |
|
|
| T |
8724695 |
tgatgatgacataaagatttaatctggagaattatgaatgactcactttgttgttagaagtgatctcaaatcagaggggatatacctaaggaatttatgt |
8724794 |
T |
|
| Q |
201 |
gctattagattgtacatcaaagttaagacaattaaccatgtgttcatggacggtcaatat |
260 |
Q |
| |
|
|||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8724795 |
gctattagatgttacaacaaagttgagacaattaaccatgtgttcatggacggtcaatat |
8724854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 3 - 266
Target Start/End: Complemental strand, 23435117 - 23434856
Alignment:
| Q |
3 |
tgtttgtttctctcatattaaatcaaggtagataaattgagaaaattcaaactccaatcttttttaatctcagacacaaaaattaaataaatttttcttg |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||| ||||||||||||||||| |
|
|
| T |
23435117 |
tgtttgtttctctcatattaaatcaaggtagataaattgagaaaattcaaactccaaatttttttaatctaaaacacaaa--ttaaataaatttttctta |
23435020 |
T |
|
| Q |
103 |
tgatgatgacataaagatttaatctgagaattatgaatgactcactctattgttagaagtgagctcaaatcagagggatatacctaatgaatttatgtgc |
202 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| | |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
23435019 |
tgatgatgacataaagattggatctgagaattatgaatgactcactctgttgttagaagtaacctcagatcagagggatatacctaatgaatttatgtgc |
23434920 |
T |
|
| Q |
203 |
tattagattgtacatcaaagttaagacaattaaccatgtgttcatggacggtcaatatgctaga |
266 |
Q |
| |
|
||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
23434919 |
tattagattttacactaaagttaagacaattagccatgtgttcatggacggtcaatatgttaga |
23434856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 108 - 253
Target Start/End: Complemental strand, 21232915 - 21232767
Alignment:
| Q |
108 |
atgacataaagatttaatctg-agaattatgaatgactcactctat--tgttagaagtgagctcaaatcagagggatatacctaatgaatttatgtgcta |
204 |
Q |
| |
|
||||||| ||||||||||||| |||| ||||||||||||||| | | |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
21232915 |
atgacatgaagatttaatctggagaaatatgaatgactcactttttgttgttagaagtgagctcaaatcagagggatatacctaataaatttatgtgcta |
21232816 |
T |
|
| Q |
205 |
ttagattgtacatcaaagttaagacaattaaccatgtgttcatggacgg |
253 |
Q |
| |
|
||||||| |||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
21232815 |
ttagattttacaacaaagttgagacaattaaccatgtgttcatggacgg |
21232767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 4 - 190
Target Start/End: Complemental strand, 21236023 - 21235841
Alignment:
| Q |
4 |
gtttgtttctctcatattaaatcaaggtagataaattgagaaaattcaaactccaatcttttttaatctcagacacaaaaattaaataaatttttcttgt |
103 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||| ||||||||||| || ||||||||||| |||| ||||||||||||| |||||||||| |
|
|
| T |
21236023 |
gtttgtttctctcatattaaatcaatgtagat----tgagcaaattcaaactacaca-ttttttaatctg-gacataaaaattaaataa-tttttcttgt |
21235931 |
T |
|
| Q |
104 |
gatgatgacataaagatttaatct-gagaattatgaatgactcactct--attgttagaagtgagctcaaatcagagggatatacctaat |
190 |
Q |
| |
|
|||||| |||| |||||||||||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21235930 |
gatgataacatgaagatttaatctagagaaatatgaatgactcactttttattgttagaagtgagctcaaatcagagggatatacctaat |
21235841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 86 - 174
Target Start/End: Complemental strand, 14323168 - 14323080
Alignment:
| Q |
86 |
taaataaatttttcttgtgatgatgacataaagatttaatct-gagaattatgaatgactcactctattgttagaagtgagctcaaatca |
174 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||| |||| || |||| ||||||||||||| | |||||||||||||||| ||||| |
|
|
| T |
14323168 |
taaataattttttcttgtgataatgacataaagatttcatctagacaattgtgaatgactcact-ttgtgttagaagtgagctctaatca |
14323080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 14328846 - 14328786
Alignment:
| Q |
188 |
aatgaatttatgtgctattagattgtacatcaaagttaagacaattaaccatgtgttcatg |
248 |
Q |
| |
|
||||||||||||| | |||||| |||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
14328846 |
aatgaatttatgttcgcttagatgttacaacaaagttgagacaattaaccatgtgttcatg |
14328786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 168
Target Start/End: Complemental strand, 14332913 - 14332832
Alignment:
| Q |
87 |
aaataaatttttcttgtgatgatgacataaagatttaatct-gagaattatgaatgactcactctattgttagaagtgagctc |
168 |
Q |
| |
|
|||||| ||||||||||||| |||||||||| |||| |||| | |||| ||||||||||||| | |||||||||||||||| |
|
|
| T |
14332913 |
aaataattttttcttgtgataatgacataaatatttcatctaggcaattgtgaatgactcact-ttctgttagaagtgagctc |
14332832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 14332825 - 14332769
Alignment:
| Q |
188 |
aatgaatttatgtgctattagattgtacatcaaagttaagacaattaaccatgtgtt |
244 |
Q |
| |
|
||||||||||||| | |||||| |||| ||||||| ||||||||||||||||||| |
|
|
| T |
14332825 |
aatgaatttatgttcgcttagatgttacaacaaagttgagacaattaaccatgtgtt |
14332769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University