View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9606_low_17 (Length: 257)

Name: NF9606_low_17
Description: NF9606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9606_low_17
NF9606_low_17
[»] chr1 (5 HSPs)
chr1 (18-257)||(14980611-14980851)
chr1 (19-144)||(30989582-30989707)
chr1 (146-249)||(24925908-24926011)
chr1 (50-144)||(30986388-30986483)
chr1 (111-144)||(14459647-14459680)
[»] chr4 (4 HSPs)
chr4 (151-257)||(5507237-5507343)
chr4 (147-249)||(18619547-18619650)
chr4 (86-144)||(5507139-5507197)
chr4 (165-242)||(20310774-20310852)
[»] chr2 (3 HSPs)
chr2 (148-246)||(22541495-22541593)
chr2 (164-249)||(27293717-27293802)
chr2 (28-122)||(22541675-22541770)
[»] chr8 (2 HSPs)
chr8 (164-257)||(34934797-34934890)
chr8 (164-257)||(16721143-16721236)
[»] chr5 (2 HSPs)
chr5 (152-248)||(26065942-26066037)
chr5 (146-249)||(21941636-21941739)
[»] chr6 (3 HSPs)
chr6 (154-249)||(17796318-17796412)
chr6 (19-74)||(22723863-22723918)
chr6 (148-247)||(22723655-22723753)


Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 14980851 - 14980611
Alignment:
Q  18 agagaacttcaatgaatcgattcaacatatacatgaatagattgaaaacattaaaaattagttttgagcaattttttatg-agccaatcacccaagagct 116  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||| |    
T  14980851 agagaacttcgatgaatcgattcaacatatacatgaatagattgaaaacattaaaaattagttttgagcaattttttttttagccaatcacccaagagtt 14980752  T
Q  117 tgaatgcaatatatgaatcgaattaaattacttgactccaaacatgtcaacctttctaacaacacacttgtgtggagtatgtgatctaaattgagagggt 216  Q
    |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |    
T  14980751 tgaatgcaatatatgaatcgaattaaatcacttgactccaaacatctcaacctttctaacaacacacttgtgcggagtatgtgatctaaattgagaggat 14980652  T
Q  217 gctctacaataactaatgacatcactcaaaacaaaaaatac 257  Q
    ||| |||||||||||||||||| ||||||||||||||||||    
T  14980651 gctttacaataactaatgacattactcaaaacaaaaaatac 14980611  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 30989582 - 30989707
Alignment:
Q  19 gagaacttcaatgaatcgattcaacatatacatgaatagattgaaaacattaaaaattagttttgagcaattttttatgagccaatcacccaagagcttg 118  Q
    |||||||||||||||||||||||| ||||||||||||  ||| ||||||||||||||   |||| | |||||||| ||||||||| ||| ||||||||||    
T  30989582 gagaacttcaatgaatcgattcaaaatatacatgaatcaattcaaaacattaaaaatagtttttaaacaatttttcatgagccaaacacacaagagcttg 30989681  T
Q  119 aatgcaatatatgaatcgaattaaat 144  Q
    |||||||||| |||||||||| ||||    
T  30989682 aatgcaatatgtgaatcgaatcaaat 30989707  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 249
Target Start/End: Original strand, 24925908 - 24926011
Alignment:
Q  146 acttgactccaaacatgtcaacctttctaacaacacacttgtgtggagtatgtgatctaaattgagagggtgctctacaataactaatgacatcactcaa 245  Q
    |||||||||||||  |  ||||||||||||||||| |||||||  ||||||||| ||||| ||||   | | || ||||| ||||||||||||||| |||    
T  24925908 acttgactccaaatttcacaacctttctaacaacatacttgtgcagagtatgtggtctaatttgaacagatcctttacaaaaactaatgacatcacacaa 24926007  T
Q  246 aaca 249  Q
    ||||    
T  24926008 aaca 24926011  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 144
Target Start/End: Original strand, 30986388 - 30986483
Alignment:
Q  50 atgaatagattgaaaacattaaaaattag-ttttgagcaattttttatgagccaatcacccaagagcttgaatgcaatatatgaatcgaattaaat 144  Q
    |||||| |||| ||||||||||||| ||| |||||| |||||||| |||| |||| || |||||||||| | ||||| || |||||||||| ||||    
T  30986388 atgaatcgattcaaaacattaaaaaatagtttttgaacaatttttcatgaaccaaacagccaagagcttcattgcaaaatgtgaatcgaatcaaat 30986483  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 144
Target Start/End: Original strand, 14459647 - 14459680
Alignment:
Q  111 agagcttgaatgcaatatatgaatcgaattaaat 144  Q
    ||||||||||||||||||||||||||||| ||||    
T  14459647 agagcttgaatgcaatatatgaatcgaatcaaat 14459680  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 151 - 257
Target Start/End: Original strand, 5507237 - 5507343
Alignment:
Q  151 actccaaacatgtcaacctttctaacaacacacttgtgtggagtatgtgatctaaattgagagggtgctctacaataactaatgacatcactcaaaacaa 250  Q
    ||||||| |||  ||||||||||||||| ||||| |||  |||||||||||||||| |||||||||||| ||||| |||||||| |||||||||||||||    
T  5507237 actccaaccatcccaacctttctaacaatacactcgtgctgagtatgtgatctaaactgagagggtgctttacaaaaactaatggcatcactcaaaacaa 5507336  T
Q  251 aaaatac 257  Q
    |||||||    
T  5507337 aaaatac 5507343  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 249
Target Start/End: Original strand, 18619547 - 18619650
Alignment:
Q  147 cttgactccaaacatgtcaacctttctaacaacacacttgtgtggagtatgtgatctaaattgagagggtgct-ctacaataactaatgacatcactcaa 245  Q
    |||||||| |||| |  ||||||||||||  |||||||| || | ||||||||||||||| ||| ||||||||  ||||| || ||||||||||||||||    
T  18619547 cttgactcaaaacttcacaacctttctaatgacacacttctgcgaagtatgtgatctaaactgaaagggtgctattacaaaaaataatgacatcactcaa 18619646  T
Q  246 aaca 249  Q
    ||||    
T  18619647 aaca 18619650  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 5507139 - 5507197
Alignment:
Q  86 caattttttatgagccaatcacccaagagcttgaatgcaatatatgaatcgaattaaat 144  Q
    ||||||||||||| |||| || ||||||||||||||||| |||||||||||||| ||||    
T  5507139 caattttttatgaaccaaacatccaagagcttgaatgcattatatgaatcgaatcaaat 5507197  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 242
Target Start/End: Original strand, 20310774 - 20310852
Alignment:
Q  165 aacctttctaacaacacacttgtgtggagtatgtgatctaaattgagagggtgc-tctacaataactaatgacatcact 242  Q
    ||||||| |||||||||||||||| ||||||||||||||||| ||| ||| ||| | || || ||||||||||||||||    
T  20310774 aacctttataacaacacacttgtgcggagtatgtgatctaaactgaaaggatgcttttaaaaaaactaatgacatcact 20310852  T

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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 148 - 246
Target Start/End: Complemental strand, 22541593 - 22541495
Alignment:
Q  148 ttgactccaaacatgtcaacctttctaacaacacacttgtgtggagtatgtgatctaaattgagagggtgctctacaataactaatgacatcactcaaa 246  Q
    |||||||||||| |  |||||||||||| |||||||||||| ||||||||||||||||||||| |||||||| ||||| ||| ||||||||||||||||    
T  22541593 ttgactccaaacttcacaacctttctaagaacacacttgtgcggagtatgtgatctaaattgaaagggtgctttacaaaaacgaatgacatcactcaaa 22541495  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 164 - 249
Target Start/End: Original strand, 27293717 - 27293802
Alignment:
Q  164 caacctttctaacaacacacttgtgtggagtatgtgatctaaattgagagggtgctctacaataactaatgacatcactcaaaaca 249  Q
    ||||| ||||||||||||||||||| |||||| |||||||||||||| | |||||| | |||  |||||||||||||||| |||||    
T  27293717 caacccttctaacaacacacttgtgaggagtacgtgatctaaattgaaatggtgctttgcaaatactaatgacatcactcgaaaca 27293802  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 122
Target Start/End: Complemental strand, 22541770 - 22541675
Alignment:
Q  28 aatgaatcgattcaacatatacatgaatagattgaaaacatta-aaaattagttttgagcaattttttatgagccaatcacccaagagcttgaatg 122  Q
    ||||| ||||||||| |||||||||||| || | ||| || || ||||||  |||||| |||||||| || |||||| ||||| ||||||||||||    
T  22541770 aatgattcgattcaaaatatacatgaatcgaatcaaatcactagaaaattgattttgaacaatttttcataagccaaacacccgagagcttgaatg 22541675  T

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Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 164 - 257
Target Start/End: Complemental strand, 34934890 - 34934797
Alignment:
Q  164 caacctttctaacaacacacttgtgtggagtatgtgatctaaattgagagggtgctctacaataactaatgacatcactcaaaacaaaaaatac 257  Q
    |||| |||||||||||||| ||||||| ||||||||||||||| ||| |||||||| ||||| |||||| ||||||| |||||||| |||||||    
T  34934890 caacatttctaacaacacatttgtgtgtagtatgtgatctaaactgaaagggtgctttacaaaaactaacgacatcaatcaaaacataaaatac 34934797  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 164 - 257
Target Start/End: Complemental strand, 16721236 - 16721143
Alignment:
Q  164 caacctttctaacaacacacttgtgtggagtatgtgatctaaattgagagggtgctctacaataactaatgacatcactcaaaacaaaaaatac 257  Q
    |||| |||||||| ||||||||||||| |||||||||| |||||| |   |||||| ||||| |||||||||||||| |||||| | |||||||    
T  16721236 caacatttctaaccacacacttgtgtgtagtatgtgatataaattaaagaggtgctttacaaaaactaatgacatcattcaaaagataaaatac 16721143  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 152 - 248
Target Start/End: Complemental strand, 26066037 - 26065942
Alignment:
Q  152 ctccaaacatgtcaacctttctaacaacacacttgtgtggagtatgtgatctaaattgagagggtgctctacaataactaatgacatcactcaaaac 248  Q
    ||||||||||  | ||||||||||||||||||||| | ||||||||||||||||| |||  | ||||| ||||| ||||||||||||||||||||||    
T  26066037 ctccaaacatcacgacctttctaacaacacacttgagcggagtatgtgatctaaactgaacgagtgctttacaa-aactaatgacatcactcaaaac 26065942  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 249
Target Start/End: Complemental strand, 21941739 - 21941636
Alignment:
Q  146 acttgactccaaacatgtcaacctttctaacaacacacttgtgtggagtatgtgatctaaattgagagggtgctctacaataactaatgacatcactcaa 245  Q
    |||||| ||||||| |  |||||||||||| | ||||||||||  |||||||||||||||| |||     |  | ||||| |||||||||||||||||||    
T  21941739 acttgattccaaacttcacaacctttctaatatcacacttgtgcagagtatgtgatctaaactgaacaaatattgtacaaaaactaatgacatcactcaa 21941640  T
Q  246 aaca 249  Q
    ||||    
T  21941639 aaca 21941636  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 17796318 - 17796412
Alignment:
Q  154 ccaaacatgtcaacctttctaacaacacacttgtgtggagtatgtgatctaaattgagagggtgctctacaataactaatgacatcactcaaaaca 249  Q
    ||||||||  ||||||||||||||| ||||||| ||  ||||||||||||||| ||| | |||| | ||||| |||||||||||||||||||||||    
T  17796318 ccaaacatcacaacctttctaacaatacacttgagtaaagtatgtgatctaaactgaaatggtgttttacaa-aactaatgacatcactcaaaaca 17796412  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 22723918 - 22723863
Alignment:
Q  19 gagaacttcaatgaatcgattcaacatatacatgaatagattgaaaacattaaaaa 74  Q
    |||||||| |||||||||||||||||||| ||||||| || | |||||||||||||    
T  22723918 gagaacttgaatgaatcgattcaacatatgcatgaatcgaatcaaaacattaaaaa 22723863  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 247
Target Start/End: Complemental strand, 22723753 - 22723655
Alignment:
Q  148 ttgactccaaacatgtcaacctttctaacaacacacttgtgtggagtatgtgatctaaattgagagggtgctctacaataactaatgacatcactcaaaa 247  Q
    |||| |||||||||  ||||||||||||||| | |||||||| ||||||||||| | || ||| |||||||| ||| |  ||||||||||| ||| ||||    
T  22723753 ttgattccaaacatcacaacctttctaacaataaacttgtgtagagtatgtgatgt-aactgaaagggtgctttactaagactaatgacattactaaaaa 22723655  T

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