View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9606_low_18 (Length: 245)

Name: NF9606_low_18
Description: NF9606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9606_low_18
NF9606_low_18
[»] chr8 (13 HSPs)
chr8 (1-231)||(5649689-5649919)
chr8 (9-231)||(5603252-5603479)
chr8 (9-231)||(5631891-5632118)
chr8 (28-162)||(13168778-13168912)
chr8 (166-226)||(5550049-5550109)
chr8 (166-226)||(5607820-5607880)
chr8 (166-226)||(5627490-5627550)
chr8 (166-226)||(14404977-14405037)
chr8 (169-226)||(12177083-12177140)
chr8 (169-226)||(12421511-12421568)
chr8 (167-226)||(6310251-6310310)
chr8 (169-226)||(12188404-12188461)
chr8 (169-226)||(12432832-12432889)
[»] scaffold0363 (1 HSPs)
scaffold0363 (166-226)||(13816-13876)
[»] chr2 (1 HSPs)
chr2 (167-215)||(19492815-19492863)


Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 5649689 - 5649919
Alignment:
Q  1 tgaactggtctatggcagaagtcaagatgtttatcagaagatgcgtaagactgttagcgatgggaaaaaactttccaagaactctcaaatttgaaaatga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5649689 tgaactggtctatggcagaagtcaagatgtttatcagaagatgcgtaagactgttagcgatgggaaaaaactttccaagaactctcaaatttgaaagtga 5649788  T
Q  101 tgatagcactttattcaaacctgagcctcctaaattcaaactgaaaaaagttgtggaaggatcgtaagaagactcaaaagcataaaagctttcattgtat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5649789 tgatagcactttattcaaacctgagcctcctaaattcaaactgaaaaaagttgtggaaggatcgtaagaagactcaaaagcataaaagctttcattgtat 5649888  T
Q  201 tagatgatgtacgtacttcagaacttatata 231  Q
    |||||||||||||||||||||||||||||||    
T  5649889 tagatgatgtacgtacttcagaacttatata 5649919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 9 - 231
Target Start/End: Complemental strand, 5603479 - 5603252
Alignment:
Q  9 tctatggcagaagtcaagatgtttatcagaa-gatgcgtaagactgttagcgatggg--aaaaaactttccaagaactctcaaatttgaaaatgatgata 105  Q
    |||||| |||||||||||||||||||| ||| ||||| |||||| ||||||||||||  |||||||||||||||| ||||||||||||||| ||||||||    
T  5603479 tctatgacagaagtcaagatgtttatcggaaagatgcataagacagttagcgatggggaaaaaaactttccaagatctctcaaatttgaaattgatgata 5603380  T
Q  106 --gcactttattcaaacctgagcctcctaaattcaaactgaaaaaagttgtggaaggatcgtaagaagactcaaaagcataaaagctttcattgtattag 203  Q
      ||||||||||||||||||| ||||| |||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  5603379 tagcactttattcaaacctgaacctccgaaattcaaacagaaaagagttgtggaaggatcataagaagactcaaaagcataaaagctttcgttgtattag 5603280  T
Q  204 atgatgtacgtacttcagaacttatata 231  Q
    ||||||||||||||||||||||||||||    
T  5603279 atgatgtacgtacttcagaacttatata 5603252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 9 - 231
Target Start/End: Original strand, 5631891 - 5632118
Alignment:
Q  9 tctatggcagaagtcaagatgtttatcagaa-gatgcgtaagactgttagcgatggg--aaaaaactttccaagaactctcaaatttgaaaatgatgata 105  Q
    |||||| |||||||||||||||||||| ||| ||||| |||||| ||||||||||||  |||||||||||||||| ||||||||||||||| ||||||||    
T  5631891 tctatgacagaagtcaagatgtttatcggaaagatgcataagacagttagcgatggggaaaaaaactttccaagatctctcaaatttgaaattgatgata 5631990  T
Q  106 --gcactttattcaaacctgagcctcctaaattcaaactgaaaaaagttgtggaaggatcgtaagaagactcaaaagcataaaagctttcattgtattag 203  Q
      ||||||||||||||||||| ||||| |||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  5631991 tagcactttattcaaacctgaacctccgaaattcaaacagaaaagagttgtggaaggatcataagaagactcaaaagcataaaagctttcgttgtattag 5632090  T
Q  204 atgatgtacgtacttcagaacttatata 231  Q
    ||||||||||||||||||||||||||||    
T  5632091 atgatgtacgtacttcagaacttatata 5632118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 28 - 162
Target Start/End: Original strand, 13168778 - 13168912
Alignment:
Q  28 tgtttatcagaagatgcgtaagactgttagcgatgggaaaaaactttccaagaactctcaaatttgaaaatgatgatagcactttattcaaacctgagcc 127  Q
    ||||||||||||||||| | |||||||| | ||||||||||||||||||||||  | |||||||||||| |||| ||  ||||| |||||||||||| ||    
T  13168778 tgtttatcagaagatgcatgagactgttggtgatgggaaaaaactttccaagatttgtcaaatttgaaattgataatgtcacttcattcaaacctgaacc 13168877  T
Q  128 tcctaaattcaaactgaaaaaagttgtggaaggat 162  Q
    |||||| ||||||| ||||| |||| |||||||||    
T  13168878 tcctaagttcaaacagaaaagagttatggaaggat 13168912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 5550049 - 5550109
Alignment:
Q  166 aagaagactcaaaagcataaaagctttcattgtattagatgatgtacgtacttcagaactt 226  Q
    |||||||||||||||||| ||| ||||||||||| |||||||||||| || ||||||||||    
T  5550049 aagaagactcaaaagcatgaaatctttcattgtactagatgatgtacataattcagaactt 5550109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 5607880 - 5607820
Alignment:
Q  166 aagaagactcaaaagcataaaagctttcattgtattagatgatgtacgtacttcagaactt 226  Q
    |||||||||||||||||| ||| ||||||||||| |||||||||||| || ||||||||||    
T  5607880 aagaagactcaaaagcatgaaatctttcattgtactagatgatgtacataattcagaactt 5607820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 5627490 - 5627550
Alignment:
Q  166 aagaagactcaaaagcataaaagctttcattgtattagatgatgtacgtacttcagaactt 226  Q
    |||||||||||||||||| ||| ||||||||||| |||||||||||| || ||||||||||    
T  5627490 aagaagactcaaaagcatgaaatctttcattgtactagatgatgtacataattcagaactt 5627550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 14404977 - 14405037
Alignment:
Q  166 aagaagactcaaaagcataaaagctttcattgtattagatgatgtacgtacttcagaactt 226  Q
    |||||||||||||||||| ||| ||||||||||| |||||||||||| || ||||||||||    
T  14404977 aagaagactcaaaagcatgaaatctttcattgtactagatgatgtacataattcagaactt 14405037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 12177140 - 12177083
Alignment:
Q  169 aagactcaaaagcataaaagctttcattgtattagatgatgtacgtacttcagaactt 226  Q
    |||||||||| |||| ||||||||||||||| |||||||||| ||||||| |||||||    
T  12177140 aagactcaaacgcatgaaagctttcattgtactagatgatgttcgtactttagaactt 12177083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 12421568 - 12421511
Alignment:
Q  169 aagactcaaaagcataaaagctttcattgtattagatgatgtacgtacttcagaactt 226  Q
    |||||||||| |||| ||||||||||||||| |||||||||| ||||||| |||||||    
T  12421568 aagactcaaacgcatgaaagctttcattgtactagatgatgttcgtactttagaactt 12421511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 6310310 - 6310251
Alignment:
Q  167 agaagactcaaaagcataaaagctttcattgtattagatgatgtacgtacttcagaactt 226  Q
    |||||||||||| |||| ||| ||||||||||| |||||||||||| || ||||||||||    
T  6310310 agaagactcaaacgcatgaaatctttcattgtaatagatgatgtacataattcagaactt 6310251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 12188461 - 12188404
Alignment:
Q  169 aagactcaaaagcataaaagctttcattgtattagatgatgtacgtacttcagaactt 226  Q
    |||||||||| |||| ||||||||||||||| |||||||||| |||| || |||||||    
T  12188461 aagactcaaacgcatgaaagctttcattgtactagatgatgttcgtattttagaactt 12188404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 12432889 - 12432832
Alignment:
Q  169 aagactcaaaagcataaaagctttcattgtattagatgatgtacgtacttcagaactt 226  Q
    |||||||||| |||| ||||||||||||||| |||||||||| |||| || |||||||    
T  12432889 aagactcaaacgcatgaaagctttcattgtactagatgatgttcgtattttagaactt 12432832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 13876 - 13816
Alignment:
Q  166 aagaagactcaaaagcataaaagctttcattgtattagatgatgtacgtacttcagaactt 226  Q
    |||||||||||||||||| ||| ||||||||||| |||||||||||| || ||||||||||    
T  13876 aagaagactcaaaagcatgaaatctttcattgtactagatgatgtacataattcagaactt 13816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 19492863 - 19492815
Alignment:
Q  167 agaagactcaaaagcataaaagctttcattgtattagatgatgtacgta 215  Q
    |||||||||||| | || ||||||||||||||| |||||||||| ||||    
T  19492863 agaagactcaaaggaatgaaagctttcattgtactagatgatgttcgta 19492815  T

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