View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9606_low_19 (Length: 240)

Name: NF9606_low_19
Description: NF9606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9606_low_19
NF9606_low_19
[»] chr2 (4 HSPs)
chr2 (106-223)||(40927230-40927347)
chr2 (1-202)||(9612447-9612648)
chr2 (1-92)||(37440443-37440534)
chr2 (22-73)||(27410110-27410161)
[»] chr7 (5 HSPs)
chr7 (1-92)||(21496766-21496857)
chr7 (1-71)||(15964185-15964255)
chr7 (22-73)||(29915717-29915768)
chr7 (12-60)||(21688780-21688828)
chr7 (106-179)||(29915610-29915683)
[»] chr6 (5 HSPs)
chr6 (1-71)||(32089842-32089912)
chr6 (1-180)||(31393192-31393372)
chr6 (1-72)||(21279682-21279753)
chr6 (21-92)||(31895038-31895109)
chr6 (22-73)||(31202372-31202423)
[»] scaffold0259 (1 HSPs)
scaffold0259 (1-92)||(7186-7277)
[»] chr1 (5 HSPs)
chr1 (1-71)||(6165518-6165588)
chr1 (1-74)||(46545103-46545176)
chr1 (13-69)||(19025094-19025150)
chr1 (1-92)||(2620005-2620096)
chr1 (28-92)||(13120230-13120294)
[»] chr4 (9 HSPs)
chr4 (1-92)||(29515257-29515348)
chr4 (2-70)||(52627371-52627439)
chr4 (1-58)||(17523412-17523469)
chr4 (6-77)||(11907430-11907501)
chr4 (22-73)||(31978561-31978612)
chr4 (1-87)||(4986338-4986424)
chr4 (1-92)||(26095287-26095374)
chr4 (1-60)||(36892240-36892299)
chr4 (106-172)||(31978646-31978712)
[»] chr3 (3 HSPs)
chr3 (1-180)||(41073344-41073523)
chr3 (1-60)||(35092200-35092259)
chr3 (17-69)||(11193429-11193481)
[»] chr8 (5 HSPs)
chr8 (6-66)||(22014011-22014071)
chr8 (17-92)||(41378417-41378492)
chr8 (28-71)||(6731781-6731824)
chr8 (1-131)||(37095776-37095906)
chr8 (20-57)||(18887706-18887743)
[»] chr5 (3 HSPs)
chr5 (28-71)||(19288066-19288109)
chr5 (1-71)||(22962836-22962906)
chr5 (3-52)||(17528472-17528521)
[»] scaffold0169 (1 HSPs)
scaffold0169 (1-70)||(27485-27554)


Alignment Details
Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 106 - 223
Target Start/End: Original strand, 40927230 - 40927347
Alignment:
Q  106 tcaataacattattgacggaataatccctcgataatacagataattatgttattgacggataaatccttcagtaaagtctttgacaaatctcccttgcat 205  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40927230 tcaataacattattgacgaaataatccttcgataatacagataattacgttattgacggataaatccttcagtaaagtctttgacaaatctcccttgcat 40927329  T
Q  206 cactaacggatcatttcc 223  Q
     ||| |||||||||||||    
T  40927330 tactgacggatcatttcc 40927347  T

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Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 9612447 - 9612648
Alignment:
Q  1 caagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctctgtaattactggcgaaaaaagccttcactaaccnnnnnnn 100  Q
    |||||||||||||||||| ||||||| | |||||||||||| ||||||||||| ||| || |||||||||| || | |||||||||| ||| |           
T  9612447 caagaattctccaaattactaaccaatttaaaattgcattagtgagggatttaaaccgtcagtaattactgacggagaaagccttcaataaacaagaaaa 9612546  T
Q  101 ngccttcaataacattattgacggaataatccctcgataatacagataattatgttattgacggataaatccttcagtaaagtctttgacaaatctccct 200  Q
      || |||||||||||| ||||||||||| ||||| ||| ||||||||| | ||||| ||||||||||||||  |||||||||| ||||| |||||||||    
T  9612547 atccctcaataacattactgacggaataaaccctcaatagtacagataaatctgttactgacggataaatccgccagtaaagtcattgacgaatctccct 9612646  T
Q  201 tg 202  Q
    ||    
T  9612647 tg 9612648  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 37440443 - 37440534
Alignment:
Q  1 caagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctctgtaattactggcgaaaaaagccttcactaac 92  Q
    |||||||||  ||| ||| ||||||| |||||||||||||||| |||||||||||||||| |||||||||| || || || |||||| ||||    
T  37440443 caagaattcctcaatttactaaccaattcaaaattgcattacttagggatttagaccctcggtaattactgacggaataaaccttcagtaac 37440534  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 27410161 - 27410110
Alignment:
Q  22 accaactcaaaattgcattactgagggatttagaccctctgtaattactggc 73  Q
    ||||||| ||||||| ||||||||||||| ||||||||| ||||||||||||    
T  27410161 accaacttaaaattgaattactgagggatctagaccctcagtaattactggc 27410110  T

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Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 21496857 - 21496766
Alignment:
Q  1 caagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctctgtaattactggcgaaaaaagccttcactaac 92  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||| || || |||||| ||||    
T  21496857 caagaattctctaaattagtaaccaactcaaaattgcattactgagggatttagaccctcaataattactggcggaataaaccttcaataac 21496766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 15964185 - 15964255
Alignment:
Q  1 caagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctctgtaattactg 71  Q
    ||||||||| |||| ||| ||||||| |||||||||||||||| ||||||||||||||||  |||||||||    
T  15964185 caagaattccccaatttactaaccaattcaaaattgcattacttagggatttagaccctcattaattactg 15964255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 29915768 - 29915717
Alignment:
Q  22 accaactcaaaattgcattactgagggatttagaccctctgtaattactggc 73  Q
    ||||||| ||||||| ||||||||||||| ||||||||| ||||||||||||    
T  29915768 accaacttaaaattgaattactgagggatctagaccctcagtaattactggc 29915717  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 21688828 - 21688780
Alignment:
Q  12 caaattattaaccaactcaaaattgcattactgagggatttagaccctc 60  Q
    ||||||| ||||||| |||||||||||||||||||| ||||| ||||||    
T  21688828 caaattactaaccaattcaaaattgcattactgaggcatttaaaccctc 21688780  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 179
Target Start/End: Complemental strand, 29915683 - 29915610
Alignment:
Q  106 tcaataacattattgacggaataatccctcgataatacagataattatgttattgacggataaatccttcagta 179  Q
    |||||||||||| ||||||||||| ||||| |||||  || | ||||  ||| |||||||||||||| ||||||    
T  29915683 tcaataacattactgacggaataaaccctcaataatttagttgattacattactgacggataaatccatcagta 29915610  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 32089842 - 32089912
Alignment:
Q  1 caagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctctgtaattactg 71  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| || |||||||    
T  32089842 caagaattctccaaattactaaccaactcaaaattgcattactgagggatttagatcctcagtgattactg 32089912  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 31393372 - 31393192
Alignment:
Q  1 caagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctctgtaattactggcgaaaaaagccttcactaac-cnnnnnn 99  Q
    ||||||||| ||||  || |||||||  ||| |||||||||||||||||||||||||||| ||||||||||||| || || |||||| ||||            
T  31393372 caagaattccccaatatactaaccaatccaatattgcattactgagggatttagaccctcagtaattactggcggaataaaccttcaataacattcaaaa 31393273  T
Q  100 nngccttcaataacattattgacggaataatccctcgataatacagataattatgttattgacggataaatccttcagtaa 180  Q
       ||| ||||||| ||| |||||||| |||||||| ||||| |||| | |||  ||| |||||||||||||| |||||||    
T  31393272 aaccctacaataacgttactgacggaacaatccctcaataattcagagagttacattactgacggataaatccgtcagtaa 31393192  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 21279753 - 21279682
Alignment:
Q  1 caagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctctgtaattactgg 72  Q
    ||||||||| | || ||| ||| ||| |||||||| |||||||||||||||||||||||| |||||||||||    
T  21279753 caagaattcccaaatttactaatcaattcaaaattacattactgagggatttagaccctcagtaattactgg 21279682  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 31895038 - 31895109
Alignment:
Q  21 aaccaactcaaaattgcattactgagggatttagaccctctgtaattactggcgaaaaaagccttcactaac 92  Q
    |||||| |||||||||||||| |||||||||||||||||| |||||||||| || || || |||||| ||||    
T  31895038 aaccaattcaaaattgcattattgagggatttagaccctcagtaattactgacggaataacccttcagtaac 31895109  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 31202372 - 31202423
Alignment:
Q  22 accaactcaaaattgcattactgagggatttagaccctctgtaattactggc 73  Q
    ||||| |||||||||||||||||| |||||||||||||  ||||||||||||    
T  31202372 accaaatcaaaattgcattactgacggatttagacccttagtaattactggc 31202423  T

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Target: scaffold0259 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 7186 - 7277
Alignment:
Q  1 caagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctctgtaattactggcgaaaaaagccttcactaac 92  Q
    ||||||||| ||||  |||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||| || || |||||| ||||    
T  7186 caagaattccccaatatattaaccaattcaaaattgcattactgagggatttagactctcagtaattactggcggaataaaccttcaataac 7277  T

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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 6165588 - 6165518
Alignment:
Q  1 caagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctctgtaattactg 71  Q
    |||||||||||||||||| ||||||| |||||||||||| |||||||||||||| ||||| ||||||||||    
T  6165588 caagaattctccaaattactaaccaattcaaaattgcatcactgagggatttaggccctcagtaattactg 6165518  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 46545103 - 46545176
Alignment:
Q  1 caagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctctgtaattactggcg 74  Q
    |||||||||  ||| ||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||    
T  46545103 caagaattcctcaatttactaaccaattcaaaattgcattactgagggatttagaccctctgtatttactggcg 46545176  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 19025094 - 19025150
Alignment:
Q  13 aaattattaaccaactcaaaattgcattactgagggatttagaccctctgtaattac 69  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||  |||||||    
T  19025094 aaattactaaccaactcaaaattgcattactgagggatttagatcctcaataattac 19025150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 2620005 - 2620096
Alignment:
Q  1 caagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctctgtaattactggcgaaaaaagccttcactaac 92  Q
    ||||||||| ||||  || |||||||  ||| ||||||||| |||||||||||||||||| ||||||||||||| || || |||||| ||||    
T  2620005 caagaattccccaatatactaaccaatccaatattgcattattgagggatttagaccctcagtaattactggcggaataaaccttcaataac 2620096  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 13120230 - 13120294
Alignment:
Q  28 tcaaaattgcattactgagggatttagaccctctgtaattactggcgaaaaaagccttcactaac 92  Q
    ||||||||||||   |||||||||||||||||| ||||||||||||| || || |||||| ||||    
T  13120230 tcaaaattgcatacatgagggatttagaccctcagtaattactggcggaataaaccttcaataac 13120294  T

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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 29515348 - 29515257
Alignment:
Q  1 caagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctctgtaattactggcgaaaaaagccttcactaac 92  Q
    |||||||||  ||| ||| ||||||| |||||||| |||||||||||||||||||||||| ||||||||||||| || || |||||| ||||    
T  29515348 caagaattcctcaatttactaaccaattcaaaattacattactgagggatttagaccctcagtaattactggcggaataaaccttcaataac 29515257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 52627371 - 52627439
Alignment:
Q  2 aagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctctgtaattact 70  Q
    |||||||| || | ||| ||||||| ||||||||||||||| ||||||||||||||||| |||||||||    
T  52627371 aagaattcccctatttactaaccaattcaaaattgcattaccgagggatttagaccctcagtaattact 52627439  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 17523469 - 17523412
Alignment:
Q  1 caagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccc 58  Q
    |||||||||  ||||||| ||||||| |||||||| ||||||||||||||||||||||    
T  17523469 caagaattcctcaaattactaaccaaatcaaaattacattactgagggatttagaccc 17523412  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 11907430 - 11907501
Alignment:
Q  6 attctccaaattattaaccaactcaaaattgcattactgagggatttagaccctctgtaattactggcgaaa 77  Q
    |||| |||||||| ||||||| |||||||||||||||| | | ||||||||| || |||||||||| |||||    
T  11907430 attccccaaattactaaccaattcaaaattgcattactcaagaatttagaccatcagtaattactgacgaaa 11907501  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 31978561 - 31978612
Alignment:
Q  22 accaactcaaaattgcattactgagggatttagaccctctgtaattactggc 73  Q
    ||||||| ||||||| ||||||||||||| ||||||||| ||||||||||||    
T  31978561 accaacttaaaattgaattactgagggatctagaccctcagtaattactggc 31978612  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 4986338 - 4986424
Alignment:
Q  1 caagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctctgtaattactggcgaaaaaagccttca 87  Q
    ||||||||| |||| ||| ||||||| |||||||  ||||| |||||||||||||||||   |||||||||||| || || ||||||    
T  4986338 caagaattccccaatttactaaccaattcaaaatgacattagtgagggatttagacccttaataattactggcggaataaaccttca 4986424  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 26095374 - 26095287
Alignment:
Q  1 caagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctctgtaattactggcgaaaaaagccttcactaac 92  Q
    ||||||||| ||||  || ||||||| ||||||||||||||||||    ||||||||||||||||||||| ||| || || |||||| ||||    
T  26095374 caagaattccccaatctactaaccaattcaaaattgcattactga----tttagaccctctgtaattactagcggaataaaccttcagtaac 26095287  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 36892240 - 36892299
Alignment:
Q  1 caagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctc 60  Q
    |||||||||  ||||||  ||||||| |||||||| ||||||||||| ||||||||||||    
T  36892240 caagaattcctcaaatttctaaccaaatcaaaattacattactgaggaatttagaccctc 36892299  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 172
Target Start/End: Original strand, 31978646 - 31978712
Alignment:
Q  106 tcaataacattattgacggaataatccctcgataatacagataattatgttattgacggataaatcc 172  Q
    |||||||||||| ||||||||||| ||||| ||||| ||| | ||||  ||| ||||||||||||||    
T  31978646 tcaataacattactgacggaataaaccctcaataattcagttgattacattactgacggataaatcc 31978712  T

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Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 41073344 - 41073523
Alignment:
Q  1 caagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctctgtaattactggcgaaaaaagccttcactaaccnnnnnnn 100  Q
    ||||||||| ||||  || |||||||  ||| |||||||||||| ||||||||||||||| ||||||||||||| || || |||||| ||||            
T  41073344 caagaattccccaatatactaaccaatccaatattgcattactgtgggatttagaccctcagtaattactggcggaataaaccttcaataacattcaaaa 41073443  T
Q  101 ngccttcaataacattattgacggaataatccctcgataatacagataattatgttattgacggataaatccttcagtaa 180  Q
      || |||||||| ||| |||||||| |||||||| ||||| |||| | |||  ||| |||||||||||||| |||||||    
T  41073444 aaccctcaataacgttactgacggaacaatccctcaataattcagagagttacattactgacggataaatccgtcagtaa 41073523  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 35092259 - 35092200
Alignment:
Q  1 caagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctc 60  Q
    ||||||||  |||| ||| ||||||| ||||||||||||||| |||||||||||||||||    
T  35092259 caagaatttcccaatttactaaccaattcaaaattgcattaccgagggatttagaccctc 35092200  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 11193429 - 11193481
Alignment:
Q  17 tattaaccaactcaaaattgcattactgagggatttagaccctctgtaattac 69  Q
    |||||||||| ||||||||| ||||| ||| ||||||||||||| ||||||||    
T  11193429 tattaaccaattcaaaattgtattaccgagagatttagaccctcagtaattac 11193481  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 22014011 - 22014071
Alignment:
Q  6 attctccaaattattaaccaactcaaaattgcattactgagggatttagaccctctgtaat 66  Q
    |||| |||||||| ||||||| ||||||||| ||||||||||||||||| ||||| |||||    
T  22014011 attccccaaattactaaccaattcaaaattgaattactgagggatttaggccctcagtaat 22014071  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 41378417 - 41378492
Alignment:
Q  17 tattaaccaactcaaaattgcattactgagggatttagaccctctgtaattactggcgaaaaaagccttcactaac 92  Q
    |||||||||| ||||||||| |||||| ||| ||||||||||||  |||||||||||| || || |||||| ||||    
T  41378417 tattaaccaattcaaaattgtattactaaggaatttagaccctcaataattactggcggaataaaccttcaataac 41378492  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 6731824 - 6731781
Alignment:
Q  28 tcaaaattgcattactgagggatttagaccctctgtaattactg 71  Q
    |||||||| ||||||||| |||||||||||||| ||||||||||    
T  6731824 tcaaaattacattactgacggatttagaccctcagtaattactg 6731781  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 37095906 - 37095776
Alignment:
Q  1 caagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctctgtaattactggcgaaaaaagccttcactaaccnnnnnnn 100  Q
    ||||||||| || |||||| ||  || |||| |||||||||||| ||||||||| || || |||||||||||||  | || || ||| ||||            
T  37095906 caagaattcccctaattatcaaggaattcaagattgcattactgggggatttaggccttcagtaattactggcggtataaaccctcagtaacgtagaaaa 37095807  T
Q  101 ngccttcaataacattattgacggaataatc 131  Q
     ||| ||||||||||||||||||||||||||    
T  37095806 agccctcaataacattattgacggaataatc 37095776  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 18887743 - 18887706
Alignment:
Q  20 taaccaactcaaaattgcattactgagggatttagacc 57  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  18887743 taaccaattcaaaattgcattacttagggatttagacc 18887706  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 19288109 - 19288066
Alignment:
Q  28 tcaaaattgcattactgagggatttagaccctctgtaattactg 71  Q
    |||||||| |||||||||||||||||||||||| ||||||||||    
T  19288109 tcaaaattacattactgagggatttagaccctcagtaattactg 19288066  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 22962836 - 22962906
Alignment:
Q  1 caagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctctgtaattactg 71  Q
    |||||||||||||||||| |||| || |||||||||||||| |||| |||||| ||| ||  |||||||||    
T  22962836 caagaattctccaaattactaactaattcaaaattgcattaatgagagatttaaaccttcaataattactg 22962906  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 17528521 - 17528472
Alignment:
Q  3 agaattctccaaattattaaccaactcaaaattgcattactgagggattt 52  Q
    ||||||| |||| ||| ||||||| |||||||||||||||||||||||||    
T  17528521 agaattccccaatttactaaccaattcaaaattgcattactgagggattt 17528472  T

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Target: scaffold0169 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 27485 - 27554
Alignment:
Q  1 caagaattctccaaattattaaccaactcaaaattgcattactgagggatttagaccctctgtaattact 70  Q
    ||||||||| || | ||| ||||||| |||||||||||||||||||| ||| ||||| || |||||||||    
T  27485 caagaattcccctatttactaaccaattcaaaattgcattactgaggaattcagaccatcagtaattact 27554  T

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