View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9606_low_20 (Length: 230)
Name: NF9606_low_20
Description: NF9606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9606_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 33499698 - 33499913
Alignment:
| Q |
1 |
atttgggaattgagatctattgatttcatcatcaactttatgagaactttggacatgtaaaagagaggagcaaaatagtgtaaacacaacatgcataaac |
100 |
Q |
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| T |
33499698 |
atttgggaattgagatctattgatttcatcatcaactttatgagaactttggacatgtaaaagagagaagcaaaatagtgtaaacacaacatgcataaac |
33499797 |
T |
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| Q |
101 |
catttttgcattttcattcaactattggagcaagaacattatcagaggcaaatatattcttatcaattatttatgatatagggcccatttatattgtaag |
200 |
Q |
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| T |
33499798 |
catttttgcattttcattcaactattggagcaagaacattatcagaggcaaatatattcttatcaattatttatgatatagggcccatttatattgtaag |
33499897 |
T |
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| Q |
201 |
ctgttaggttcatact |
216 |
Q |
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| T |
33499898 |
ctgttaggttcatact |
33499913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 33517323 - 33517110
Alignment:
| Q |
1 |
atttgggaattgagatctattgatttcatcatcaactttatgagaactttggacatgtaaaagagaggagcaaaatagtgtaaacacaacatgcataaac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
33517323 |
atttgggaattgagatctattgatttcatcatcaactttatgagaactttggacatgtaaaagagagaagcaaaatagtgtaaacacaacatgcataaac |
33517224 |
T |
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| Q |
101 |
catttttgcattttcattcaactat------tggagcaagaacattatcagaggcaaatatattcttatcaattatttatgatatagggcccatttatat |
194 |
Q |
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||||||||||||||||||||||| | |||||||| ||||||||||||| |||||||||| |||||||||||||||| ||| ||||||| ||||| |
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| T |
33517223 |
catttttgcattttcattcaactgtagagtgtggagcaaacacattatcagaggtaaatatattc-tatcaattatttatgacatatggcccatatatat |
33517125 |
T |
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| Q |
195 |
tgtaagctgttaggt |
209 |
Q |
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| T |
33517124 |
tgcaagttgttaggt |
33517110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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