View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9606_low_5 (Length: 394)
Name: NF9606_low_5
Description: NF9606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9606_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 22 - 384
Target Start/End: Complemental strand, 1764397 - 1764035
Alignment:
| Q |
22 |
tcgagcctacctccactccagtaccggattttatcagtctcagtccttgtgactattcggattgttatgctcgaaagagcttttataattgctgctttgc |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1764397 |
tcgagcctacctccactccagtaccggattttatcagtctcagtccttgtgactattcggattgttatgctcgaaagagcttttataattgttgctttgc |
1764298 |
T |
|
| Q |
122 |
tcaaggagttggtgctcggatcttgattcgtgttggcagtcgatccatttgctagttaaacacctgaattgctcttcacaaatgttcacttttcatcttt |
221 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
1764297 |
tcaaggagttggtgcttggatcttgattcgtgttggcagtcgatccattcgttagttaagcacatgaattgctcttcacaaatgttcacttttcatcttt |
1764198 |
T |
|
| Q |
222 |
tttgttacctggtttgactcccgtacgtcggttcgctaggttgcgttagttataagtgattgattgtgaggatagtttcgggctagtccactaggtttga |
321 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1764197 |
tttgttacctggtttgactcccgtacgccggttcgctaggttgcgttagttataagtgattgtttgtgaggatagtttcgggctagtccactaggtttga |
1764098 |
T |
|
| Q |
322 |
tttttcactttgtattctcatttgggttgtacctgagtcacgtcttatgtcccctactctctg |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||| |
|
|
| T |
1764097 |
tttttcactttgtattctcatttgggttgtacctgagttacgtctaatgtcccccactctctg |
1764035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 23 - 375
Target Start/End: Complemental strand, 1763560 - 1763206
Alignment:
| Q |
23 |
cgagcctacctccactccagtaccggattttatcagtctcagtccttgtgactattcg--gattgttatgctcgaaagagcttttataattgctgctttg |
120 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
1763560 |
cgagcctacctacactccaataccggattttatctatctcagtccttgtgactattctcagattgttatgctcgaaagagcttttatacttcctgctttg |
1763461 |
T |
|
| Q |
121 |
ctcaaggagttggtgctcggatcttgattcgtgttggcagtcgatccatttgctagttaaacacctgaattgctcttcacaaatgttcacttttcatctt |
220 |
Q |
| |
|
|||| ||||||||| || |||||||||| |||||||| || |||| ||| |||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1763460 |
ctcagggagttggtactatgatcttgatttgtgttggcggttgatcaattccctagttaagaacctggattgctcttcacaaatgttcacttttcatctt |
1763361 |
T |
|
| Q |
221 |
ttttgttacctggtttgactcccgtacgtcggttcgctaggttgcgttagttataagtgattgattgtgaggatagtttcgggctagtccactaggtttg |
320 |
Q |
| |
|
|||||| || |||||||||||||||||| |||| ||| | |||| || || |||||||| | |||| |||||||||||| | | ||| | |||||||| |
|
|
| T |
1763360 |
ttttgtaacatggtttgactcccgtacgctggtttgctggtttgctttcgtgataagtgaatatttgttaggatagtttcgtgttggtcaattaggtttg |
1763261 |
T |
|
| Q |
321 |
atttttcactttgtattctcatttgggttgtacctgagtcacgtcttatgtcccc |
375 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
1763260 |
attttttactttgtattttcatttgggttgtacctgagacacgtctgatgtcccc |
1763206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 275 - 384
Target Start/End: Original strand, 33299308 - 33299417
Alignment:
| Q |
275 |
aagtgattgattgtgaggatagtttcgggctagtccactaggtttgatttttcactttgtattctcatttgggttgtacctgagtcacgtcttatgtccc |
374 |
Q |
| |
|
|||| |||| |||| | |||||||| ||| | |||||||| ||||||||||||||| | ||||| ||||||||||||| || |||| |||| ||||||| |
|
|
| T |
33299308 |
aagtaattgtttgttatgatagtttagggttggtccactatgtttgatttttcactctatattcctatttgggttgtacatgggtcaggtctaatgtccc |
33299407 |
T |
|
| Q |
375 |
ctactctctg |
384 |
Q |
| |
|
| | |||||| |
|
|
| T |
33299408 |
ccaatctctg |
33299417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 132
Target Start/End: Complemental strand, 43335360 - 43335310
Alignment:
| Q |
82 |
attgttatgctcgaaagagcttttataattgctgctttgctcaaggagttg |
132 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||| ||| ||||||| |
|
|
| T |
43335360 |
attgttatgctcgaaagagcttttatacttgttgctttggtcagggagttg |
43335310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 120
Target Start/End: Original strand, 30257590 - 30257626
Alignment:
| Q |
84 |
tgttatgctcgaaagagcttttataattgctgctttg |
120 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30257590 |
tgttatgctcgaaagagcttttatacttgctgctttg |
30257626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 266
Target Start/End: Complemental strand, 18628846 - 18628782
Alignment:
| Q |
203 |
atgttcacttttcat-cttttttgttacctggtttgactcccgtacgtcggttcgctaggttgcg |
266 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||| | |||||||| |||||||||||||||| |
|
|
| T |
18628846 |
atgttcacttttcattcttttttgtaacctggtttcgcgcccgtacgcgggttcgctaggttgcg |
18628782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 24099591 - 24099639
Alignment:
| Q |
84 |
tgttatgctcgaaagagcttttataattgctgctttgctcaaggagttg |
132 |
Q |
| |
|
||||||||||||||||||||||| | ||| ||||||| ||| ||||||| |
|
|
| T |
24099591 |
tgttatgctcgaaagagcttttacacttgttgctttggtcagggagttg |
24099639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University