View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9606_low_9 (Length: 342)
Name: NF9606_low_9
Description: NF9606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9606_low_9 |
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| [»] chr3 (3 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 7 - 342
Target Start/End: Complemental strand, 32838793 - 32838456
Alignment:
| Q |
7 |
gatatggctagcaaaattgaagatatttgtctcttttgagtgta--cagaagcattgaagtaaacactaaacaacatatgaatacttagtgatctaaagc |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32838793 |
gatatggctagcaaaattgaagatatttgtctcttttgagtgtgtgcagaagcattgaagtaaacactaaacaacatatgaatacttagtgatcttaagc |
32838694 |
T |
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| Q |
105 |
ttgaaattgaattgatcatcttgttcatatttttcaatgaggcagagatcagtaaacataagccccaaaaccagcacctttggccaacaaaacatgtgtt |
204 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
32838693 |
ttgaaattaaattgatcatcttgttcatatttttcaatgaggcagaaattagtaaacataagccccaaaaccagcaccttcggccaacaaaacatgtgct |
32838594 |
T |
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| Q |
205 |
gtcatgacagcagccgagctaaacacaacaagggcagccaaactgtcatgacagcatctgcacctcctaaccagccacagaatgaatgtgtttctcattt |
304 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32838593 |
gtcatgacagcagccgagctaaacacagcaagggcagccaaactgtcatgacagcatctgcacctcctaaccagccacagaatgaatgtgtttctcattt |
32838494 |
T |
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| Q |
305 |
taattatttgaatcctcactggccaattattatgatct |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
32838493 |
taattatttgaatcctcactggccaattattatgatct |
32838456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 7 - 342
Target Start/End: Original strand, 33293988 - 33294325
Alignment:
| Q |
7 |
gatatggctagcaaaattgaagatatttgtctcttttgagtgta--cagaagcattgaagtaaacactaaacaacatatgaatacttagtgatctaaagc |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33293988 |
gatatggctagcaaaattgaagatatttgtctcttttgagtgtgtgcagaagcattgaagtaaacactaaacaacatatgaatacttagtgatcttaagc |
33294087 |
T |
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| Q |
105 |
ttgaaattgaattgatcatcttgttcatatttttcaatgaggcagagatcagtaaacataagccccaaaaccagcacctttggccaacaaaacatgtgtt |
204 |
Q |
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| T |
33294088 |
ttgaaattaaattgatcatcttgttcatatttttcaatgaggcagaaattagtaaacataagccccaaaaccagcaccttcggccaacaaaacatgtgct |
33294187 |
T |
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| Q |
205 |
gtcatgacagcagccgagctaaacacaacaagggcagccaaactgtcatgacagcatctgcacctcctaaccagccacagaatgaatgtgtttctcattt |
304 |
Q |
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| T |
33294188 |
gtcatgacagcagccgagctaaaaacagcaagggcagccaaactgtcatgatagcatctgcacctcctaaccagccacagaatgaatgtgtttctcattt |
33294287 |
T |
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| Q |
305 |
taattatttgaatcctcactggccaattattatgatct |
342 |
Q |
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| T |
33294288 |
taattatttgaatcctcactggccaattattatgatct |
33294325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 280 - 342
Target Start/End: Complemental strand, 46930882 - 46930820
Alignment:
| Q |
280 |
cacagaatgaatgtgtttctcattttaattatttgaatcctcactggccaattattatgatct |
342 |
Q |
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| T |
46930882 |
cacagaatgaatgcacttcacattttaattatttgaatcctcactggccaattattatcatct |
46930820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 7 - 342
Target Start/End: Complemental strand, 5723910 - 5723575
Alignment:
| Q |
7 |
gatatggctagcaaaattgaagatatttgtctcttttgagtgtacagaagcattgaagtaaacactaaacaacatatgaatacttagtgatctaaagctt |
106 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5723910 |
gatatagctagcaaaattgaagatatttgtctcttttgagtgtacagaagcattgaagtaaacactaaacaacatatgaatacttagtgatctaaagctt |
5723811 |
T |
|
| Q |
107 |
gaaattgaattgatcatcttgttcatatttttcaatgaggcagagatcagtaaacataagccccaaaaccagcacctttggccaacaaaacatgtgttgt |
206 |
Q |
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|||||| ||||||||||||||||||| ||||||||||||||||| || ||||||||||||||| |||||||||||||| ||||||||||||||||| ||| |
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| T |
5723810 |
gaaattaaattgatcatcttgttcatgtttttcaatgaggcagaaattagtaaacataagcccaaaaaccagcaccttcggccaacaaaacatgtgctgt |
5723711 |
T |
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| Q |
207 |
catgacagcagccgagctaaacacaacaagggcagccaaactgtcatgacagcatctgcacctcctaaccagccacagaatgaatgtgtttctcatttta |
306 |
Q |
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|||||||| | |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||| |
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| T |
5723710 |
catgacagtaaccgagctaaacacagcaagggcaaccaaactgtcatgacagcatctgcacctcctaaccaaccacaaaatgaatgtgtttttcatttta |
5723611 |
T |
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| Q |
307 |
attatttgaatcctcactggccaattattatgatct |
342 |
Q |
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||||||||||||||||||| |||||||||||||||| |
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| T |
5723610 |
attatttgaatcctcactgaccaattattatgatct |
5723575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 118
Target Start/End: Original strand, 37091401 - 37091512
Alignment:
| Q |
7 |
gatatggctagcaaaattgaagatatttgtctcttttgagtgtacagaagcattgaagtaaacactaaacaacatatgaatacttagtgatctaaagctt |
106 |
Q |
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|||||||||| |||| ||||||||| ||||||||||| |||| |||||||||||||||||| | |||||| ||||| |||||||||||||||||||||| |
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| T |
37091401 |
gatatggctaacaaagttgaagatagttgtctcttttcagtgcacagaagcattgaagtaagccctaaactgcatatcaatacttagtgatctaaagctt |
37091500 |
T |
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| Q |
107 |
gaaattgaattg |
118 |
Q |
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|||||| ||||| |
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| T |
37091501 |
gaaattaaattg |
37091512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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