View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9607_3 (Length: 378)
Name: NF9607_3
Description: NF9607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9607_3 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 44017054 - 44017417
Alignment:
| Q |
1 |
attacttgtatctttgttatgctaaaaaagagtaagcaaaagaacaaagaggtaacactaatattttccatttttgattgtgaaaatggtggctttactt |
100 |
Q |
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| T |
44017054 |
attacttgtatctttgttatgctaaaaaagagtaagcaaaagaacaaagaggtaacactaatattttccatttttgattgtgaaaatggtgactttactt |
44017153 |
T |
|
| Q |
101 |
ggagtcggagattaatgtagaagatgagggtgaaggtgaaggtgaaggtaataaaagactactagtttaggagagcacatgcttgatgcttaagtttcac |
200 |
Q |
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||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
44017154 |
ggagttggagattaatgtagaagatgagggtg------aaggtgaaggtgataaaagactactagtttaggagagcacatgcatgatgcttaagtttcac |
44017247 |
T |
|
| Q |
201 |
acaaacgttttaaacaaaagcatgtgaaacaaaaagagatagtgtcaagtagtatgtttaagaagggagataatagagatgagagaatggtcaaaaagga |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44017248 |
acaaacgttttaaacacaagcatgtgaaacaaaaagagatagtgtcaagtagtatgtttaagaagggagataatagagatgagagaatggtcaaaaagga |
44017347 |
T |
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| Q |
301 |
atggacaaagctttctatttgttatcttagacatataccagaatgtaccttaactatctttgtctctgct |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44017348 |
atggacaaagctttctatttgttatcttagacatataccagaatgtaccttaactatctttgtctctgct |
44017417 |
T |
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