View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9607_low_1 (Length: 578)

Name: NF9607_low_1
Description: NF9607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9607_low_1
NF9607_low_1
[»] chr2 (21 HSPs)
chr2 (17-458)||(33241854-33242295)
chr2 (17-458)||(33249775-33250216)
chr2 (493-568)||(6672862-6672937)
chr2 (493-568)||(25987731-25987806)
chr2 (493-568)||(40156028-40156103)
chr2 (498-568)||(45137039-45137109)
chr2 (493-568)||(44650381-44650456)
chr2 (493-568)||(5039408-5039483)
chr2 (493-568)||(36836398-36836473)
chr2 (494-568)||(21637886-21637960)
chr2 (493-557)||(2357155-2357219)
chr2 (493-557)||(7860226-7860290)
chr2 (493-568)||(10745301-10745376)
chr2 (493-568)||(17136375-17136450)
chr2 (493-568)||(36380201-36380276)
chr2 (493-568)||(2754120-2754195)
chr2 (494-557)||(30372760-30372823)
chr2 (494-538)||(2098939-2098983)
chr2 (497-568)||(3200873-3200944)
chr2 (493-568)||(26690142-26690217)
chr2 (528-568)||(558508-558548)
[»] chr8 (10 HSPs)
chr8 (493-568)||(19723299-19723374)
chr8 (493-568)||(27881057-27881132)
chr8 (493-568)||(28021238-28021313)
chr8 (494-564)||(4840129-4840199)
chr8 (493-568)||(32296708-32296783)
chr8 (493-555)||(29767176-29767238)
chr8 (493-568)||(11403989-11404064)
chr8 (493-568)||(24475065-24475140)
chr8 (528-568)||(17095573-17095613)
chr8 (493-568)||(22711497-22711572)
[»] chr7 (14 HSPs)
chr7 (493-568)||(16059422-16059497)
chr7 (493-568)||(35109679-35109754)
chr7 (493-568)||(38265306-38265381)
chr7 (493-567)||(41151160-41151234)
chr7 (493-568)||(18117013-18117088)
chr7 (493-568)||(34721822-34721897)
chr7 (494-568)||(45278441-45278515)
chr7 (493-568)||(21577167-21577242)
chr7 (499-568)||(12472115-12472184)
chr7 (493-568)||(11216757-11216832)
chr7 (493-568)||(38405223-38405298)
chr7 (497-557)||(48176391-48176451)
chr7 (506-567)||(23028684-23028745)
chr7 (528-568)||(37095279-37095319)
[»] chr3 (15 HSPs)
chr3 (493-568)||(7417786-7417861)
chr3 (493-568)||(8400843-8400918)
chr3 (493-568)||(35198753-35198828)
chr3 (496-568)||(50823689-50823761)
chr3 (496-568)||(50852099-50852171)
chr3 (493-568)||(22855875-22855950)
chr3 (493-557)||(52545309-52545373)
chr3 (497-568)||(34824548-34824619)
chr3 (529-568)||(29635892-29635931)
chr3 (499-557)||(43334134-43334192)
chr3 (493-557)||(48078021-48078085)
chr3 (496-568)||(55467990-55468062)
chr3 (493-568)||(50726066-50726141)
chr3 (493-568)||(50786707-50786782)
chr3 (497-541)||(39438915-39438959)
[»] chr1 (11 HSPs)
chr1 (496-568)||(30054511-30054583)
chr1 (493-568)||(4573367-4573442)
chr1 (497-568)||(20014450-20014521)
chr1 (493-568)||(45323994-45324069)
chr1 (499-568)||(30370129-30370198)
chr1 (493-557)||(21090103-21090167)
chr1 (497-568)||(12025173-12025244)
chr1 (493-568)||(33763323-33763398)
chr1 (497-568)||(30850909-30850980)
chr1 (517-568)||(44438619-44438670)
chr1 (493-551)||(15034443-15034501)
[»] chr4 (12 HSPs)
chr4 (493-568)||(39863847-39863922)
chr4 (493-568)||(51066481-51066556)
chr4 (493-568)||(8740436-8740511)
chr4 (493-568)||(32139152-32139227)
chr4 (493-568)||(46494467-46494542)
chr4 (493-568)||(51714034-51714109)
chr4 (493-568)||(30970453-30970528)
chr4 (493-568)||(36192529-36192604)
chr4 (493-568)||(50905736-50905811)
chr4 (493-568)||(7173654-7173729)
chr4 (493-563)||(2294784-2294854)
chr4 (499-557)||(47627073-47627133)
[»] scaffold0021 (1 HSPs)
scaffold0021 (493-568)||(107760-107835)
[»] chr5 (4 HSPs)
chr5 (493-568)||(17064311-17064386)
chr5 (493-555)||(37976534-37976596)
chr5 (493-556)||(20983084-20983147)
chr5 (496-557)||(35237103-35237164)
[»] chr6 (6 HSPs)
chr6 (461-568)||(19686896-19687002)
chr6 (494-557)||(14496341-14496404)
chr6 (493-568)||(35163819-35163894)
chr6 (493-568)||(2711803-2711878)
chr6 (528-568)||(20685348-20685388)
chr6 (499-557)||(14505603-14505661)
[»] scaffold0691 (1 HSPs)
scaffold0691 (507-569)||(7037-7099)


Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 17 - 458
Target Start/End: Original strand, 33241854 - 33242295
Alignment:
Q  17 aataaccaaacccaaaaagctaggtggtcacggaacgaggaaggctagagaggctaacacatctctgctgggcatattagtttggaggttacatcaaaat 116  Q
    ||||||||||||||||||||||||||||| || ||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33241854 aataaccaaacccaaaaagctaggtggtctcgaaatcaggaaggctagagaggctaacacatctctgctgggcagattagtttggaggttacatcaaaat 33241953  T
Q  117 tgtgattctttatgggtgcaggttttaactcacaagtatatttatgcagacaaacttctcactgttagtaggaaatcaggatcggtcacttggaatgcta 216  Q
    |||||||||||||||||| |||||||||||||||||||| || |||||||||| |||||||||||||  |||||||||||||| ||||||||||||||||    
T  33241954 tgtgattctttatgggtgaaggttttaactcacaagtattttcatgcagacaagcttctcactgttaccaggaaatcaggatcagtcacttggaatgcta 33242053  T
Q  217 ttatgaaagctaggtttgctcttagggatggttttgatttccgattgggtgatggcaactcctcattttggtttgttaattggtctagcataggaaagtt 316  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||    
T  33242054 ttatgaaagctaggtttactcttagggatggttttgatttccgattgggtgatgacaactcctcattttggtttgttaattggtctgggataggaaagtt 33242153  T
Q  317 aacagaaaagattctttatgtggacattcacgatctcaatctaagagtgaaggatgtctttgtgaatggagcttggaattttaatcatatccacacaact 416  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  33242154 aacagaaaaggttctttatgtggacattcacgatctcaatctaagagtgaaggatgtcttcgtgaatggagcttggaattttaatcatatctacacaact 33242253  T
Q  417 ctccctgcatctatcacagatagcttgaaaacgctccccatt 458  Q
    |||||||||||||| ||||||||||||||||  |||||||||    
T  33242254 ctccctgcatctattacagatagcttgaaaattctccccatt 33242295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 17 - 458
Target Start/End: Original strand, 33249775 - 33250216
Alignment:
Q  17 aataaccaaacccaaaaagctaggtggtcacggaacgaggaaggctagagaggctaacacatctctgctgggcatattagtttggaggttacatcaaaat 116  Q
    ||||||||||||||||||||||||||||| || ||  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33249775 aataaccaaacccaaaaagctaggtggtctcgaaatcaggaaggctagagaggctaacacatctctgctgggcagattagtttggaggttacatcaaaat 33249874  T
Q  117 tgtgattctttatgggtgcaggttttaactcacaagtatatttatgcagacaaacttctcactgttagtaggaaatcaggatcggtcacttggaatgcta 216  Q
    |||||||||||||||||| |||||||||||||||||||| || |||||||||| |||||||||||||  |||||||||||||| ||||||||||||||||    
T  33249875 tgtgattctttatgggtgaaggttttaactcacaagtattttcatgcagacaagcttctcactgttaccaggaaatcaggatcagtcacttggaatgcta 33249974  T
Q  217 ttatgaaagctaggtttgctcttagggatggttttgatttccgattgggtgatggcaactcctcattttggtttgttaattggtctagcataggaaagtt 316  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||    
T  33249975 ttatgaaagctaggtttactcttagggatggttttgatttccgattgggtgatgacaactcctcattttggtttgttaattggtctgggataggaaagtt 33250074  T
Q  317 aacagaaaagattctttatgtggacattcacgatctcaatctaagagtgaaggatgtctttgtgaatggagcttggaattttaatcatatccacacaact 416  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  33250075 aacagaaaaggttctttatgtggacattcacgatctcaatctaagagtgaaggatgtcttcgtgaatggagcttggaattttaatcatatctacacaact 33250174  T
Q  417 ctccctgcatctatcacagatagcttgaaaacgctccccatt 458  Q
    |||||||||||||| ||||||||||||||||  |||||||||    
T  33250175 ctccctgcatctattacagatagcttgaaaattctccccatt 33250216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 493 - 568
Target Start/End: Complemental strand, 6672937 - 6672862
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    |||||||||||||||||||||||||||||| | | ||||||||||||||| |||||||||||||| ||||||||||    
T  6672937 caggtcttgaatccgagagaacccgggttcaagccccgctagtgcctttggagggaggtaaatgtaattacctttg 6672862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 493 - 568
Target Start/End: Complemental strand, 25987806 - 25987731
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    |||||||||||||||||||||| ||||||||| | ||||||||||||||| |||||||||||||| ||||||||||    
T  25987806 caggtcttgaatccgagagaactcgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttg 25987731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 493 - 568
Target Start/End: Original strand, 40156028 - 40156103
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    ||||||||||||||||||||| |||||||||| | ||||||||||||||| |||||||||||||| ||||||||||    
T  40156028 caggtcttgaatccgagagaatccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttg 40156103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 498 - 568
Target Start/End: Complemental strand, 45137109 - 45137039
Alignment:
Q  498 cttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    ||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||| ||||||||||    
T  45137109 cttgaatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttg 45137039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 493 - 568
Target Start/End: Original strand, 44650381 - 44650456
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    |||||||||||||||||||||||||  ||||| ||||| ||||||||||| |||||||||||||| ||||||||||    
T  44650381 caggtcttgaatccgagagaacccgatttcgagctccgttagtgcctttggagggaggtaaatgtaattacctttg 44650456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 493 - 568
Target Start/End: Original strand, 5039408 - 5039483
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    |||||||||||||||||||||| ||||||||| |||||||||||| |||  ||||||||||| || ||||||||||    
T  5039408 caggtcttgaatccgagagaactcgggttcgagctccgctagtgcttttagagggaggtaaacgtaattacctttg 5039483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 493 - 568
Target Start/End: Complemental strand, 36836473 - 36836398
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    ||||||||||||||||||||||||| ||||||   ||||| ||||||||| |||||||||||||| ||||||||||    
T  36836473 caggtcttgaatccgagagaacccgagttcgagtcccgctggtgcctttggagggaggtaaatgtaattacctttg 36836398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 494 - 568
Target Start/End: Original strand, 21637886 - 21637960
Alignment:
Q  494 aggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    ||||||||||| |||||||||||||||| || | ||||||||||||||| |||||||||||||| | ||||||||    
T  21637886 aggtcttgaattcgagagaacccgggtttgagccccgctagtgcctttggagggaggtaaatgtaaatacctttg 21637960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 493 - 557
Target Start/End: Complemental strand, 2357219 - 2357155
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgt 557  Q
    ||||||||||||||||||||||||||||||||  ||| ||||| |||||| ||||||||||||||    
T  2357219 caggtcttgaatccgagagaacccgggttcgagttccactagtacctttggagggaggtaaatgt 2357155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 493 - 557
Target Start/End: Complemental strand, 7860290 - 7860226
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgt 557  Q
    ||||||||||||||||||||||| ||||| || | ||||||||||||||| ||||||||||||||    
T  7860290 caggtcttgaatccgagagaacctgggtttgagccccgctagtgcctttggagggaggtaaatgt 7860226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 493 - 568
Target Start/End: Complemental strand, 10745376 - 10745301
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    |||||||||||| ||||||||||||||| ||| | ||||||||||||||  |||||||||||||| |||| |||||    
T  10745376 caggtcttgaattcgagagaacccgggtccgagccccgctagtgcctttagagggaggtaaatgtaattatctttg 10745301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 493 - 568
Target Start/End: Original strand, 17136375 - 17136450
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    ||||| ||||||| |||||||||||||||||| | ||| ||||||||||| |||||||||||||| | ||||||||    
T  17136375 caggttttgaatctgagagaacccgggttcgagccccgttagtgcctttggagggaggtaaatgtaaatacctttg 17136450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 493 - 568
Target Start/End: Complemental strand, 36380276 - 36380201
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    |||||||||||| ||||| ||| |||||| |||| ||||||||||||||| |||||||||||||| ||| ||||||    
T  36380276 caggtcttgaattcgagaaaactcgggtttgaaccccgctagtgcctttggagggaggtaaatgtaattccctttg 36380201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 493 - 568
Target Start/End: Complemental strand, 2754195 - 2754120
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    |||||||||||||||||||||||||| |||||   || ||| |||||||| |||||||||||||| | ||||||||    
T  2754195 caggtcttgaatccgagagaacccggattcgagtcccactaatgcctttggagggaggtaaatgtaaatacctttg 2754120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 494 - 557
Target Start/End: Complemental strand, 30372823 - 30372760
Alignment:
Q  494 aggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgt 557  Q
    ||||||||||| ||||||| || |||||||| ||||||||||||||||| | ||||||||||||    
T  30372823 aggtcttgaattcgagagatcctgggttcgagctccgctagtgcctttggaaggaggtaaatgt 30372760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 494 - 538
Target Start/End: Complemental strand, 2098983 - 2098939
Alignment:
Q  494 aggtcttgaatccgagagaacccgggttcgaactccgctagtgcc 538  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||    
T  2098983 aggtcttgaattcgagagaacccaggttcgaactccgctagtgcc 2098939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 497 - 568
Target Start/End: Original strand, 3200873 - 3200944
Alignment:
Q  497 tcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    |||||||||  |||||||| || ||||| |  |||||||||||||| |||||||||||||| ||||||||||    
T  3200873 tcttgaatctaagagaacctggattcgagcctcgctagtgcctttggagggaggtaaatgtaattacctttg 3200944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 493 - 568
Target Start/End: Original strand, 26690142 - 26690217
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    ||||| || ||| |||||||| | ||||||||   |||||||||| |||| |||||||||||||| ||||||||||    
T  26690142 caggttttaaattcgagagaatctgggttcgagtcccgctagtgcttttggagggaggtaaatgtaattacctttg 26690217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 568
Target Start/End: Complemental strand, 558548 - 558508
Alignment:
Q  528 ccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    ||||||||||||||| |||||||||||||| ||||| ||||    
T  558548 ccgctagtgcctttggagggaggtaaatgtaattacttttg 558508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 3e-25; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 493 - 568
Target Start/End: Original strand, 19723299 - 19723374
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||| ||||||||||    
T  19723299 caggtcttgaatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttg 19723374  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 493 - 568
Target Start/End: Complemental strand, 27881132 - 27881057
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    ||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||| | ||||||||    
T  27881132 caggtcttgaatctgagagaacccgggttcgagccccgctagtgcctttgaagggaggtaaatgtaaatacctttg 27881057  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 493 - 568
Target Start/End: Complemental strand, 28021313 - 28021238
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    ||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||| | ||||||||    
T  28021313 caggtcttgaatctgagagaacccgggttcgagccccgctagtgcctttgaagggaggtaaatgtaaatacctttg 28021238  T

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Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 494 - 564
Target Start/End: Original strand, 4840129 - 4840199
Alignment:
Q  494 aggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacc 564  Q
    |||| |||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||    
T  4840129 aggttttgaatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtcattacc 4840199  T

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Target: chr8; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 493 - 568
Target Start/End: Complemental strand, 32296783 - 32296708
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    ||||||||||||  |||||||||||||||| | | | |||||||||||||||||||||||||||| ||||||||||    
T  32296783 caggtcttgaatttgagagaacccgggttcaagccctgctagtgcctttgaagggaggtaaatgtaattacctttg 32296708  T

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Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 493 - 555
Target Start/End: Original strand, 29767176 - 29767238
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaat 555  Q
    ||||||||||||| ||||||||||||| |||| | ||||||||||||||||||||||||||||    
T  29767176 caggtcttgaatctgagagaacccggggtcgagccccgctagtgcctttgaagggaggtaaat 29767238  T

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Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 493 - 568
Target Start/End: Original strand, 11403989 - 11404064
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    |||||||||||| |||||||||| |||||||| |  |||||||| ||||| |||||||||||||| | ||||||||    
T  11403989 caggtcttgaattcgagagaacctgggttcgagcctcgctagtgtctttggagggaggtaaatgtaaatacctttg 11404064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 493 - 568
Target Start/End: Complemental strand, 24475140 - 24475065
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    |||||||||||||||| ||||  ||  ||||| ||||||||||||||||| |||||||||||||| | ||||||||    
T  24475140 caggtcttgaatccgatagaattcgaattcgagctccgctagtgcctttggagggaggtaaatgtaaatacctttg 24475065  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 528 - 568
Target Start/End: Original strand, 17095573 - 17095613
Alignment:
Q  528 ccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    ||||||||||||||| |||||||||||||| ||||||||||    
T  17095573 ccgctagtgcctttggagggaggtaaatgtaattacctttg 17095613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 493 - 568
Target Start/End: Original strand, 22711497 - 22711572
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    |||||||||||||||||||||| |||||| ||   |  ||| |||||||| |||||||||||||| | ||||||||    
T  22711497 caggtcttgaatccgagagaactcgggtttgagtccaactaatgcctttggagggaggtaaatgtaaatacctttg 22711572  T

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Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 493 - 568
Target Start/End: Complemental strand, 16059497 - 16059422
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||| ||||||||||    
T  16059497 caggtcttgaatccgagagaacccgggttcgagccccgctagtgcctttgcagggaggtaaatgtaattacctttg 16059422  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 493 - 568
Target Start/End: Original strand, 35109679 - 35109754
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    |||||||||||||||||||||||||||||||| | || |||||||||||| |||||||||||||| ||||||||||    
T  35109679 caggtcttgaatccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgtaattacctttg 35109754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 493 - 568
Target Start/End: Complemental strand, 38265381 - 38265306
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    ||||||||||||||||||||||| |||||||| | ||||||||||||||| |||||||||||||| ||||||||||    
T  38265381 caggtcttgaatccgagagaacctgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttg 38265306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 493 - 567
Target Start/End: Original strand, 41151160 - 41151234
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattaccttt 567  Q
    |||||||||||||||||||||||||||||||| | ||||||||| ||||| |||||||||||||| |||||||||    
T  41151160 caggtcttgaatccgagagaacccgggttcgagccccgctagtgtctttggagggaggtaaatgtaattaccttt 41151234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 493 - 568
Target Start/End: Complemental strand, 18117088 - 18117013
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    |||||||||||||||||||||||||||||||| |  |||||||||||||  |||||||||||||| ||||||||||    
T  18117088 caggtcttgaatccgagagaacccgggttcgagccacgctagtgcctttagagggaggtaaatgtaattacctttg 18117013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 493 - 568
Target Start/End: Original strand, 34721822 - 34721897
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    |||||||||||||||||||||||||| ||| | | ||||||||||||||| |||||||||||||| ||||||||||    
T  34721822 caggtcttgaatccgagagaacccggattcaagccccgctagtgcctttggagggaggtaaatgtaattacctttg 34721897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 494 - 568
Target Start/End: Original strand, 45278441 - 45278515
Alignment:
Q  494 aggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    ||||||||||||||||| ||||||||||||| | ||||||||||||||||||||| |||||||| |||| |||||    
T  45278441 aggtcttgaatccgagataacccgggttcgagccccgctagtgcctttgaagggaagtaaatgtaattatctttg 45278515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 493 - 568
Target Start/End: Complemental strand, 21577242 - 21577167
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    |||||||||||||||||||||||||||||||| | || ||| |||||||| |||||||||||||| | ||||||||    
T  21577242 caggtcttgaatccgagagaacccgggttcgagccccactaatgcctttggagggaggtaaatgtaaatacctttg 21577167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 499 - 568
Target Start/End: Original strand, 12472115 - 12472184
Alignment:
Q  499 ttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    |||||||||||||||||||||||||| | || |||||||||||| |||||||||||| | ||||||||||    
T  12472115 ttgaatccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatataattacctttg 12472184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 493 - 568
Target Start/End: Original strand, 11216757 - 11216832
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    ||||||||||||| |||||||||||||||||| | ||  ||||||||||| |||||||||||||| | ||||||||    
T  11216757 caggtcttgaatctgagagaacccgggttcgagccccattagtgcctttggagggaggtaaatgtaaatacctttg 11216832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 493 - 568
Target Start/End: Complemental strand, 38405298 - 38405223
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    |||||||||||||||||||||  || |||||| |  |||||||||||||| |||||||||||||| |||| |||||    
T  38405298 caggtcttgaatccgagagaattcgagttcgagcctcgctagtgcctttggagggaggtaaatgtaattatctttg 38405223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 497 - 557
Target Start/End: Original strand, 48176391 - 48176451
Alignment:
Q  497 tcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgt 557  Q
    |||| |||||||||||| |||||||||| | ||||||||||||||| | ||||||||||||    
T  48176391 tcttaaatccgagagaatccgggttcgagccccgctagtgcctttggaaggaggtaaatgt 48176451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 506 - 567
Target Start/End: Original strand, 23028684 - 23028745
Alignment:
Q  506 cgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattaccttt 567  Q
    |||||||| ||||||||||||||| ||| |||||||  ||||| |||||||| |||||||||    
T  23028684 cgagagaatccgggttcgaactcctctaatgcctttagagggatgtaaatgtaattaccttt 23028745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 568
Target Start/End: Complemental strand, 37095319 - 37095279
Alignment:
Q  528 ccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    ||||||||| ||||| |||||||||||||| ||||||||||    
T  37095319 ccgctagtgtctttggagggaggtaaatgtaattacctttg 37095279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 493 - 568
Target Start/End: Original strand, 7417786 - 7417861
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||| ||||||||||    
T  7417786 caggtcttgaatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttg 7417861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 493 - 568
Target Start/End: Original strand, 8400843 - 8400918
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||| ||||||||||    
T  8400843 caggtcttgaatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttg 8400918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 493 - 568
Target Start/End: Original strand, 35198753 - 35198828
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    |||||||||||||||||||||||||||||||| | || ||| |||||||| |||||||||||||| | ||||||||    
T  35198753 caggtcttgaatccgagagaacccgggttcgagccccactaatgcctttgcagggaggtaaatgtaaatacctttg 35198828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 496 - 568
Target Start/End: Original strand, 50823689 - 50823761
Alignment:
Q  496 gtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    |||||||||||||||||| ||||||||||   ||| ||||||||||| |||||||||||||| ||||||||||    
T  50823689 gtcttgaatccgagagaatccgggttcgagtcccgttagtgcctttggagggaggtaaatgtaattacctttg 50823761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 496 - 568
Target Start/End: Complemental strand, 50852171 - 50852099
Alignment:
Q  496 gtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    |||||||||||||||||| ||||||||||   ||| ||||||||||| |||||||||||||| ||||||||||    
T  50852171 gtcttgaatccgagagaatccgggttcgagtcccgttagtgcctttggagggaggtaaatgtaattacctttg 50852099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 493 - 568
Target Start/End: Original strand, 22855875 - 22855950
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    |||||||| ||| ||||||||||| ||||||| | ||||||||| ||||| |||||||||||||| ||||||||||    
T  22855875 caggtcttaaattcgagagaacccaggttcgagccccgctagtgtctttggagggaggtaaatgtaattacctttg 22855950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 493 - 557
Target Start/End: Original strand, 52545309 - 52545373
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgt 557  Q
    |||||||||||||||||| ||  ||||||||| | |||||||||||||| |||||||||||||||    
T  52545309 caggtcttgaatccgagaaaattcgggttcgagccccgctagtgcctttaaagggaggtaaatgt 52545373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 497 - 568
Target Start/End: Original strand, 34824548 - 34824619
Alignment:
Q  497 tcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    ||||||||||||||||||| | ||||||   ||| |||||||||||||||||||||||||| |||| |||||    
T  34824548 tcttgaatccgagagaacctgagttcgagtcccgttagtgcctttgaagggaggtaaatgtaattatctttg 34824619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 529 - 568
Target Start/End: Original strand, 29635892 - 29635931
Alignment:
Q  529 cgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  29635892 cgctagtgcctttgaagggaggtaaatgtaattacctttg 29635931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 499 - 557
Target Start/End: Complemental strand, 43334192 - 43334134
Alignment:
Q  499 ttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgt 557  Q
    ||||||||||||||||||| |||||| | ||||||||| ||| | ||||||||||||||    
T  43334192 ttgaatccgagagaacccgagttcgagccccgctagtgtcttgggagggaggtaaatgt 43334134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 493 - 557
Target Start/End: Complemental strand, 48078085 - 48078021
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgt 557  Q
    |||||||||||| ||||||||| ||||||||| |  | |||||||||||| ||| ||||||||||    
T  48078085 caggtcttgaattcgagagaactcgggttcgagcctcactagtgcctttggaggaaggtaaatgt 48078021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 496 - 568
Target Start/End: Original strand, 55467990 - 55468062
Alignment:
Q  496 gtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    ||||||||| |||||||| |||||||||| | || ||| ||| |||| |||||||||||||| | ||||||||    
T  55467990 gtcttgaattcgagagaatccgggttcgagccccactaatgcgtttggagggaggtaaatgtaaatacctttg 55468062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 493 - 568
Target Start/End: Complemental strand, 50726141 - 50726066
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    |||||||||||||||||||||  ||||||||| | ||| ||||| ||||| ||| |||||||| | ||||| ||||    
T  50726141 caggtcttgaatccgagagaattcgggttcgagccccgttagtgtctttggaggaaggtaaatataattacttttg 50726066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 493 - 568
Target Start/End: Original strand, 50786707 - 50786782
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    |||||||||||||||||||||  ||||||||| | ||| ||||| ||||| ||| |||||||| | ||||| ||||    
T  50786707 caggtcttgaatccgagagaattcgggttcgagccccgttagtgtctttggaggaaggtaaatataattacttttg 50786782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 497 - 541
Target Start/End: Complemental strand, 39438959 - 39438915
Alignment:
Q  497 tcttgaatccgagagaacccgggttcgaactccgctagtgccttt 541  Q
    ||||||||||||||||| || ||||| || |||||||||||||||    
T  39438959 tcttgaatccgagagaatccaggttcaaattccgctagtgccttt 39438915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 496 - 568
Target Start/End: Complemental strand, 30054583 - 30054511
Alignment:
Q  496 gtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||| ||||||||||    
T  30054583 gtcttgaatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttg 30054511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 493 - 568
Target Start/End: Original strand, 4573367 - 4573442
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    |||||||||||||||||||||||||||||||| | || ||| || ||||| |||||||||||||| | ||||||||    
T  4573367 caggtcttgaatccgagagaacccgggttcgagccccactaatgtctttggagggaggtaaatgtaaatacctttg 4573442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 497 - 568
Target Start/End: Original strand, 20014450 - 20014521
Alignment:
Q  497 tcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    ||||||||||||||||||||||||||||   |||||||| |||||| |||||||||||||| ||||| ||||    
T  20014450 tcttgaatccgagagaacccgggttcgagtcccgctagtacctttggagggaggtaaatgtaattacatttg 20014521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 493 - 568
Target Start/End: Original strand, 45323994 - 45324069
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    ||||||||||||||||||||||| |||||| | | |||||||||| |||| |||||||||||||| | ||||||||    
T  45323994 caggtcttgaatccgagagaacctgggttccagccccgctagtgcttttggagggaggtaaatgtaaatacctttg 45324069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 499 - 568
Target Start/End: Complemental strand, 30370198 - 30370129
Alignment:
Q  499 ttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    |||||| |||||||| |||||||||| | || |||||| ||||| |||||||||||||| ||||||||||    
T  30370198 ttgaattcgagagaatccgggttcgagccccactagtgtctttggagggaggtaaatgtaattacctttg 30370129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 493 - 557
Target Start/End: Original strand, 21090103 - 21090167
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgt 557  Q
    |||||||||||| ||||||||  ||||||||| | ||||||||||| ||| ||||||||||||||    
T  21090103 caggtcttgaattcgagagaattcgggttcgagccccgctagtgccgttggagggaggtaaatgt 21090167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 497 - 568
Target Start/End: Original strand, 12025173 - 12025244
Alignment:
Q  497 tcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    |||||||| |||||||||| |||||||| | ||  ||||||||||| ||| |||||||||| ||||||||||    
T  12025173 tcttgaattcgagagaacctgggttcgagccccattagtgcctttggaggaaggtaaatgtaattacctttg 12025244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 493 - 568
Target Start/End: Complemental strand, 33763398 - 33763323
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    |||||||||||| |||||||| |  ||||||| | ||||||||||||||  ||||||| |||||| ||||||||||    
T  33763398 caggtcttgaattcgagagaatctaggttcgagccccgctagtgcctttagagggaggcaaatgtaattacctttg 33763323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 568
Target Start/End: Complemental strand, 30850980 - 30850909
Alignment:
Q  497 tcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    |||| ||||||||||||| ||||||||| | ||| ||||| ||||| |||||||||||| | ||| ||||||    
T  30850980 tcttaaatccgagagaactcgggttcgagccccgttagtgtctttggagggaggtaaatataattgcctttg 30850909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 517 - 568
Target Start/End: Complemental strand, 44438670 - 44438619
Alignment:
Q  517 gggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    |||||||| |||||||| |||||||| |||||||||||||| ||||| ||||    
T  44438670 gggttcgagctccgctaatgcctttggagggaggtaaatgtaattacttttg 44438619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 493 - 551
Target Start/End: Original strand, 15034443 - 15034501
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggt 551  Q
    |||||||||||||||| ||||||| ||||||| | |  |||||||||||| ||||||||    
T  15034443 caggtcttgaatccgaaagaacccaggttcgagccctactagtgcctttggagggaggt 15034501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 493 - 568
Target Start/End: Complemental strand, 39863922 - 39863847
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||| ||||| |||||||| ||||||||||    
T  39863922 caggtcttgaatccgagagaacccgggttcggaccccgctagtgcctttggagggaagtaaatgtaattacctttg 39863847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 493 - 568
Target Start/End: Original strand, 51066481 - 51066556
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||| | ||||||||||    
T  51066481 caggtcttgaatccgagagaactcgggttcgagctccgctagtgcctttggagggaggtaaatataattacctttg 51066556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 493 - 568
Target Start/End: Original strand, 8740436 - 8740511
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    |||||||||||||||||||| ||||||||||| | ||||||||||||||| |||||||||||||| | ||||||||    
T  8740436 caggtcttgaatccgagagatcccgggttcgagccccgctagtgcctttggagggaggtaaatgtaaatacctttg 8740511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 493 - 568
Target Start/End: Original strand, 32139152 - 32139227
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    |||||| |||||||||||||||| |||||||||| ||||||||| ||||| |||||||||||||| ||||||||||    
T  32139152 caggtcatgaatccgagagaacctgggttcgaaccccgctagtgtctttggagggaggtaaatgtaattacctttg 32139227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 493 - 568
Target Start/End: Complemental strand, 46494542 - 46494467
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    |||||||||||||||||||||||||||||||| | || |||||||||||| |||||||||||||| | ||||||||    
T  46494542 caggtcttgaatccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgtaaatacctttg 46494467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 493 - 568
Target Start/End: Complemental strand, 51714109 - 51714034
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    |||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||| | | ||||||||    
T  51714109 caggtcttgaatccgagagaacccgggttcgagccccactagtgcctttgaagggaggtaaatataaatacctttg 51714034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 493 - 568
Target Start/End: Complemental strand, 30970528 - 30970453
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    ||||||||||||||||||||| |||||||||| |  | ||||||||||||||||||||||||||| | ||||||||    
T  30970528 caggtcttgaatccgagagaatccgggttcgagcctcactagtgcctttgaagggaggtaaatgtaaatacctttg 30970453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 493 - 568
Target Start/End: Original strand, 36192529 - 36192604
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    |||||||||||| ||||||||||||||||||| | || |||||||||||| |||||||||||||| ||||| ||||    
T  36192529 caggtcttgaattcgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgtaattacttttg 36192604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 493 - 568
Target Start/End: Original strand, 50905736 - 50905811
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    ||||||||||||||||||||| | |||||||| | ||||||||||||||| || ||||||||||| |||| |||||    
T  50905736 caggtcttgaatccgagagaatctgggttcgagccccgctagtgcctttggagagaggtaaatgtaattatctttg 50905811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 493 - 568
Target Start/End: Complemental strand, 7173729 - 7173654
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    |||||||||||||||||||||||  ||||| |   ||||||||||||||| | |||||||||||||| ||||||||    
T  7173729 caggtcttgaatccgagagaacctaggttcaagacccgctagtgcctttggaaggaggtaaatgtcaatacctttg 7173654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 493 - 563
Target Start/End: Complemental strand, 2294854 - 2294784
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattac 563  Q
    |||||||||||| ||||||||| |||||||||  | |||||||||||||| ||| |||||||||| |||||    
T  2294854 caggtcttgaattcgagagaactcgggttcgagtttcgctagtgcctttggaggaaggtaaatgtaattac 2294784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 499 - 557
Target Start/End: Complemental strand, 47627133 - 47627073
Alignment:
Q  499 ttgaatccgagagaacccgggttcgaa--ctccgctagtgcctttgaagggaggtaaatgt 557  Q
    |||||||||||||||||||| |||||   | || |||||||||||||||||||||||||||    
T  47627133 ttgaatccgagagaacccggattcgagagccccactagtgcctttgaagggaggtaaatgt 47627073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 493 - 568
Target Start/End: Complemental strand, 107835 - 107760
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    |||||||||||| |||||||||||| |||||| | ||||||||||||||| |||||||||||||| ||||||||||    
T  107835 caggtcttgaattcgagagaacccgagttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttg 107760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 493 - 568
Target Start/End: Original strand, 17064311 - 17064386
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    |||||||||||||||||||||||||||||||| |  |||||||||||||| |||||||||||||| | ||||||||    
T  17064311 caggtcttgaatccgagagaacccgggttcgagcctcgctagtgcctttggagggaggtaaatgtaaatacctttg 17064386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 493 - 555
Target Start/End: Original strand, 37976534 - 37976596
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaat 555  Q
    ||||||||||||||||||||||| |||||||| | |||||||||| |||||||||||||||||    
T  37976534 caggtcttgaatccgagagaacctgggttcgagccccgctagtgcatttgaagggaggtaaat 37976596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 493 - 556
Target Start/End: Complemental strand, 20983147 - 20983084
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatg 556  Q
    |||||||||||||| |||||| |||||||||| | ||||||||||||| | || ||||||||||    
T  20983147 caggtcttgaatccaagagaatccgggttcgagccccgctagtgccttcggagagaggtaaatg 20983084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 496 - 557
Target Start/End: Complemental strand, 35237164 - 35237103
Alignment:
Q  496 gtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgt 557  Q
    ||||||||| |||||||| | || ||||| | ||||||||| ||||||||||||||||||||    
T  35237164 gtcttgaattcgagagaatctggattcgagccccgctagtgtctttgaagggaggtaaatgt 35237103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 6e-20; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 461 - 568
Target Start/End: Complemental strand, 19687002 - 19686896
Alignment:
Q  461 cttcaaaaggtttggtctagtggtnnnnnnnncaggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcat 560  Q
    ||||||||||||||||||||||||        ||||||||||||| ||||||||| |||||||| | || |||||||||||| |||||||||||||| ||    
T  19687002 cttcaaaaggtttggtctagtggtaaaaaaa-caggtcttgaatctgagagaacctgggttcgagcccctctagtgcctttgtagggaggtaaatgtaat 19686904  T
Q  561 tacctttg 568  Q
    ||||||||    
T  19686903 tacctttg 19686896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 494 - 557
Target Start/End: Original strand, 14496341 - 14496404
Alignment:
Q  494 aggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgt 557  Q
    ||||||||||||||||||||||||||||||| | || |||||||||||| ||||||||||||||    
T  14496341 aggtcttgaatccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgt 14496404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 493 - 568
Target Start/End: Complemental strand, 35163894 - 35163819
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    ||||||||||||||||||||||| |||||||| | || ||| |||||||| |||||||||||||| | ||||||||    
T  35163894 caggtcttgaatccgagagaaccagggttcgagccccactaatgcctttggagggaggtaaatgtaaatacctttg 35163819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 493 - 568
Target Start/End: Complemental strand, 2711878 - 2711803
Alignment:
Q  493 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    |||||||||||||||| |||||| || ||||| | || ||||||| |||| |||||||||||||| | ||||||||    
T  2711878 caggtcttgaatccgatagaacctggattcgagccccactagtgcttttggagggaggtaaatgtaaatacctttg 2711803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 528 - 568
Target Start/End: Original strand, 20685348 - 20685388
Alignment:
Q  528 ccgctagtgcctttgaagggaggtaaatgtcattacctttg 568  Q
    ||||||||||||||| |||||||||||||| ||||||||||    
T  20685348 ccgctagtgcctttggagggaggtaaatgtaattacctttg 20685388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 499 - 557
Target Start/End: Complemental strand, 14505661 - 14505603
Alignment:
Q  499 ttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgt 557  Q
    |||||||||||||| ||||  ||||| | |||||||||| |||| ||||||||||||||    
T  14505661 ttgaatccgagagatcccgaattcgagccccgctagtgcttttggagggaggtaaatgt 14505603  T

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Target: scaffold0691 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 507 - 569
Target Start/End: Complemental strand, 7099 - 7037
Alignment:
Q  507 gagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttgc 569  Q
    ||||||| ||||||||||   |||||||||| |||| ||||| |||||||| |||||||||||    
T  7099 gagagaatccgggttcgagtcccgctagtgcgtttggagggaagtaaatgtaattacctttgc 7037  T

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