View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9607_low_3 (Length: 343)
Name: NF9607_low_3
Description: NF9607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9607_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 11 - 328
Target Start/End: Original strand, 23933738 - 23934053
Alignment:
| Q |
11 |
cagagagaacttaaagtgtgcagattatcttggaccttcttgagacgatcactctgcattatcaaaaataaaataccatcactcggtaataaacagcaat |
110 |
Q |
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| T |
23933738 |
cagagagaacttaaagtgtgcagattgtcttggaccttcttgagacgatcactctgcattattaaaaataaaatatcatcactcggtaataaacagcaat |
23933837 |
T |
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| Q |
111 |
aaatatgatattttgggttcatagaacaataatacacacgcacaaagagaaaaaagaagagagagtgggagaggcaaggaattaaccttctccttttgaa |
210 |
Q |
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| T |
23933838 |
aaatatgatattttgggttcatagaacaataatacacacgcaca--gagaaaaaagaagagagagtgggagaggcaaggaattaaccttctccttttgaa |
23933935 |
T |
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| Q |
211 |
gtgtatgaagttgtctgtgcaattcttcaagtttcctcaatgacaaatcggtttcatctacaacgagtgggacgttttcacttggaccagaaatctcgtt |
310 |
Q |
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| T |
23933936 |
gtgtatgaagttgtctgtgcaattcttcaagtttcctcaatgacaaatcggtttcatctacaacgagtgggacgttttcacttggaccagaaatctcgtt |
23934035 |
T |
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| Q |
311 |
tgatatactgtgaatctg |
328 |
Q |
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| T |
23934036 |
tgatatactgtgaatctg |
23934053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 275
Target Start/End: Complemental strand, 34235774 - 34235704
Alignment:
| Q |
205 |
tttgaagtgtatgaagttgtctgtgcaattcttcaagtttcctcaatgacaaatcggtttcatctacaacg |
275 |
Q |
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| T |
34235774 |
tttgaagtgcatttagctgtctgtgcaaatcttcaaattttctcagggacaaatcagtttcatctacaacg |
34235704 |
T |
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