View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9608_low_1 (Length: 669)
Name: NF9608_low_1
Description: NF9608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9608_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 41308575 - 41308831
Alignment:
| Q |
1 |
tttataaccttgaaatgaatcaagacatgcccataatggatgccaatggtgcctgagaggattgctgatatggaactatcaaaaagtaaaactcctttaa |
100 |
Q |
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| T |
41308575 |
tttataaccttgaaatgaatcaagacgtgcccataatggatgccaatggtgcctgagaggattgctgatatggaactatcaaaaagtaaaactcctttaa |
41308674 |
T |
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| Q |
101 |
gatatttctaataatatatatcagatgctactcaatacaaattttagagacaaatacctcaataagccctctggttcaaatggagcaagacaccagcttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41308675 |
gatatttctaataatatatatcagatgctactcaatacaaattttagagacaaatacctcaataagccctctggttcaaatggagcaagacaccagcttg |
41308774 |
T |
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| Q |
201 |
gagcatcatcgcgaaatggaccctcacttggggaactaaatgtgcatgcctacaaat |
257 |
Q |
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| T |
41308775 |
gagcatcatcacgaaatggaccctcacttggggaactaaatgtgcatgcctacaaat |
41308831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 254 - 483
Target Start/End: Original strand, 41308884 - 41309113
Alignment:
| Q |
254 |
aaatattcagaccaatgccattttatttagaacaattttatcaacttgtgatcaatttttgacctgaaccttgtgtattttggttatacatataattact |
353 |
Q |
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| T |
41308884 |
aaatattcagaccaatgccattttatttagaacaattttatcaacttgtgatcaatttttgacctgaaccttgtgtattttggttatacatataattact |
41308983 |
T |
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| Q |
354 |
cacctttaaccgtctccaaacaggttgagaataaagatgattaaccccccaagtttgtctatcaacatatccaacagcgttacatgcaggaccaaggtgc |
453 |
Q |
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| T |
41308984 |
cacctttaaccgtctccaaacaggttgagaataaagatgattaaccccccaagtttgtctatcaacatatccaacagcgttacatgcaggaccaaggtgc |
41309083 |
T |
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| Q |
454 |
cctctcatcccacatatcacctaatatacg |
483 |
Q |
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| T |
41309084 |
cctctcatcccacatatcacctaatatacg |
41309113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 555 - 652
Target Start/End: Original strand, 41309185 - 41309282
Alignment:
| Q |
555 |
ctaccgtgtatctctttggttcatcaccgttaacacgatctacaaaactccaattaggaacatacaaagcgaaggttgtgatcatgtaaatgagaaat |
652 |
Q |
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| T |
41309185 |
ctaccgtgtatctctttggttcatcattgttaacatgatctacaaaactccaattaggaacatacaaagcaaaggttgtgatcatgtaaatgagaaat |
41309282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 41322630 - 41322703
Alignment:
| Q |
5 |
taaccttgaaatgaatcaagacatgcccataatggatgccaatggtgcctgagaggattgctgatatggaacta |
78 |
Q |
| |
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| T |
41322630 |
taaccttgaaatgaatcaagacatgcccataatggatgccgatggttcccgagaggattgccgatatggaacta |
41322703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 156 - 252
Target Start/End: Original strand, 41323284 - 41323380
Alignment:
| Q |
156 |
acctcaataagccctctggttcaaatggagcaagacaccagcttggagcatcatcgcgaaatggaccctcacttggggaactaaatgtgcatgccta |
252 |
Q |
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||||||| |||||||||||||||||||||||| ||||||| ||||||||||| ||||||| |||||| || | ||| ||||| ||||||||| |||| |
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| T |
41323284 |
acctcaacaagccctctggttcaaatggagcacgacaccaacttggagcatcttcgcgaattggaccttcgcctggagaactgaatgtgcattccta |
41323380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 365 - 479
Target Start/End: Original strand, 41323618 - 41323732
Alignment:
| Q |
365 |
gtctccaaacaggttgagaataaagatgattaaccccccaagtttgtctatcaacatatccaacagcgttacatgcaggaccaaggtgccctctcatccc |
464 |
Q |
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| T |
41323618 |
gtctccaaacaggatgtatataaaagtggttaaccccccaaacttgcctatcgacatatccaacagcgttacatgcagggcctctgtgtcctctcatccc |
41323717 |
T |
|
| Q |
465 |
acatatcacctaata |
479 |
Q |
| |
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| T |
41323718 |
acatatcacctaata |
41323732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 556 - 652
Target Start/End: Original strand, 41323804 - 41323900
Alignment:
| Q |
556 |
taccgtgtatctctttggttcatcaccgttaacacgatctacaaaactccaattaggaacatacaaagcgaaggttgtgatcatgtaaatgagaaat |
652 |
Q |
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|||||||||||| |||||||| ||||||||| | ||||||| |||||||||| |||||| || | | ||| |||||||||||||||||||||||| |
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| T |
41323804 |
taccgtgtatctttttggttcgtcaccgttagtatgatctacgaaactccaatcaggaacgtagagggtgaaagttgtgatcatgtaaatgagaaat |
41323900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 351 - 469
Target Start/End: Complemental strand, 27658058 - 27657940
Alignment:
| Q |
351 |
actcacctttaaccgtctccaaacaggttgagaataaagatgattaaccccccaagtttgtctatcaacatatccaacagcgttacatgcaggaccaagg |
450 |
Q |
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|||||||||||| || ||||||||||||||||| |||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||| | | |
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| T |
27658058 |
actcacctttaagcgactccaaacaggttgagagtaaagatgattaaccccccacatttgtctatccacatacccaacagcgttacatgcaggacctaag |
27657959 |
T |
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| Q |
451 |
tgccctctcatcccacata |
469 |
Q |
| |
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|| ||||| |||||||||| |
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| T |
27657958 |
tgtcctctaatcccacata |
27657940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 27660016 - 27659943
Alignment:
| Q |
5 |
taaccttgaaatgaatcaagacatgcccataatggatgccaatggtgcctgagaggattgctgatatggaacta |
78 |
Q |
| |
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||||||||||||||||||||||||| ||||| |||||||||||||| || || ||||| |||||||| |||||| |
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| T |
27660016 |
taaccttgaaatgaatcaagacatgtccatagtggatgccaatggtcccagataggatagctgatatagaacta |
27659943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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