View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9608_low_10 (Length: 346)

Name: NF9608_low_10
Description: NF9608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9608_low_10
NF9608_low_10
[»] chr7 (2 HSPs)
chr7 (154-346)||(34189035-34189227)
chr7 (13-156)||(34189274-34189418)
[»] chr4 (2 HSPs)
chr4 (13-140)||(19692454-19692581)
chr4 (13-140)||(19703039-19703166)


Alignment Details
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 154 - 346
Target Start/End: Complemental strand, 34189227 - 34189035
Alignment:
Q  154 tttgttgcaagctaagactccagcttgttgtaccaggctgtaggaccctgcttaaggccatataaggccttcttgagcttgtatacttgatgctcgcatc 253  Q
    ||||||| ||| |||||||||| |||| ||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  34189227 tttgttgtaaggtaagactccaacttgctgtaccatgctctaggagcctgcttaaggccatataaggccttcttgagcttgtatacttgatgctcgcgtc 34189128  T
Q  254 cctaaaatgcataacttggtggcttttctggatagacattttcattgattgctcaatgcaaaaaagttgatttaatgtcgagctgacgaatac 346  Q
    ||| |||| |||||| ||||||||  ||| |||||||||||||||||||||||| |||||| |||| ||||||||||||||| ||| ||||||    
T  34189127 cctgaaatacataacctggtggctgctctagatagacattttcattgattgctccatgcaagaaagctgatttaatgtcgagttgatgaatac 34189035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 34189418 - 34189274
Alignment:
Q  13 aaaaatatctcatcttgcctaagttagtcattaaaaattctttcatcatcatagtgttgaactcttgaaacatgacttcatcattacgactatatataag 112  Q
    |||||||||||||||||||||||| |||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||    
T  34189418 aaaaatatctcatcttgcctaagtcagtcattgcaaattctttcatcatcatagttttgaactcttgaaacatgacttcatcattaccagtatatataag 34189319  T
Q  113 atcatctacaaaaacacacacaact-aaatttcatctctctcttt 156  Q
    |||||||||| |||||||||||| | |||||||| || |||||||    
T  34189318 atcatctacataaacacacacaattaaaatttcacctttctcttt 34189274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 6e-59; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 13 - 140
Target Start/End: Original strand, 19692454 - 19692581
Alignment:
Q  13 aaaaatatctcatcttgcctaagttagtcattaaaaattctttcatcatcatagtgttgaactcttgaaacatgacttcatcattacgactatatataag 112  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  19692454 aaaaatatctcatcttgcctaagttagtcattgcaaattctttcatcatcatagtgttgaactcttgaaacatgacttcatcattacgaatatatataag 19692553  T
Q  113 atcatctacaaaaacacacacaactaaa 140  Q
    ||||||||||||||||||||||||||||    
T  19692554 atcatctacaaaaacacacacaactaaa 19692581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 13 - 140
Target Start/End: Original strand, 19703039 - 19703166
Alignment:
Q  13 aaaaatatctcatcttgcctaagttagtcattaaaaattctttcatcatcatagtgttgaactcttgaaacatgacttcatcattacgactatatataag 112  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  19703039 aaaaatatctcatcttgcctaagttagtcattgcaaattctttcatcatcatagtgttgaactcttgaaacatgacttcatcattacgaatatatataag 19703138  T
Q  113 atcatctacaaaaacacacacaactaaa 140  Q
    ||||||||||||||||||||||||||||    
T  19703139 atcatctacaaaaacacacacaactaaa 19703166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University