View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9608_low_11 (Length: 321)
Name: NF9608_low_11
Description: NF9608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9608_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 313
Target Start/End: Original strand, 4635839 - 4636134
Alignment:
| Q |
18 |
ctgtctgcattactattattcgaatttcaactttccaagcatacttaattttctattttatgtcttcacaggagttgattgatctaggtgcacgcacgct |
117 |
Q |
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| T |
4635839 |
ctgtctgcattactattattcgaatttcaactttccaagcatacttaattttctattttatgtcttcacaggagttgattgatctaggtgcacgcacgct |
4635938 |
T |
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| Q |
118 |
catgatccctgggaatttcccattgggatgcagtgtaatttatttaacaaaatatgaaactacagataagagccaatacgactcagctggttgcttgaag |
217 |
Q |
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| T |
4635939 |
catgatccctgggaatttcccattgggatgcaatgtaatttacttaacaaaatatgaaactacagataagagccaatatgactcagctggttgcttgaag |
4636038 |
T |
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| Q |
218 |
tggttaaacgaatttgctgaattttataatcaggagctccaatatgagttacataggctaagaagaattcatcctcatgctactatcatctctgct |
313 |
Q |
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| T |
4636039 |
tggttaaacgaatttgctgaattttataatcaggagctccaatatgagttacataggctaagaagaattcatcctcatgctactataatctatgct |
4636134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 66 - 313
Target Start/End: Original strand, 4659044 - 4659291
Alignment:
| Q |
66 |
ttttctattttatgtcttcacaggagttgattgatctaggtgcacgcacgctcatgatccctgggaatttcccattgggatgcagtgtaatttatttaac |
165 |
Q |
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| T |
4659044 |
ttttgtattttatgtcttcgcaggagttgattgatctaggggcacgcacgcttatggtccctggaaatttcccattgggatgtagtgcagtccatttaac |
4659143 |
T |
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| Q |
166 |
aaaatatgaaactacagataagagccaatacgactcagctggttgcttgaagtggttaaacgaatttgctgaattttataatcaggagctccaatatgag |
265 |
Q |
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| T |
4659144 |
aacgtatgaaaccacggataagaaccaatatgactcatttggttgcttgaagtggttaaatgaattttctgaattttataaccagaaactccaacatgag |
4659243 |
T |
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| Q |
266 |
ttacataggctaagaagaattcatcctcatgctactatcatctctgct |
313 |
Q |
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| T |
4659244 |
atacataggcttcgagtaattcatcctcatgctaatatcatctatgct |
4659291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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