View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9608_low_12 (Length: 298)
Name: NF9608_low_12
Description: NF9608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9608_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 33 - 281
Target Start/End: Complemental strand, 29260723 - 29260493
Alignment:
| Q |
33 |
tcaataaagatattcaaacaaaaactccgttgaaagtgttctctgactactttactatcttacaggtttgatggtattatgattataattacacaaaaca |
132 |
Q |
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| T |
29260723 |
tcaataaagatattcaaacaaaaactccgttgaaagtgttctctgactactttactgtcttacaggtttgatggt--------------tacacaaaaca |
29260638 |
T |
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| Q |
133 |
attaaacagctacgtagctgaagtgaaagaaaataaaaaggtgtggtatatattnnnnnnnttattcatatgtttgttagccatatgaatttcaaataat |
232 |
Q |
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| T |
29260637 |
attaaacagctacgtagctgaagtgaaagaaaataaaaaggtgtggtatatattaaaaaaattattaatatgtt----agccatatgaatttcaaataat |
29260542 |
T |
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| Q |
233 |
ctttaaccaaagagaatgagaaaatcctgcaaattaagaaagtagatca |
281 |
Q |
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| T |
29260541 |
ctttaaccaaagagaatgagaaaatcctgcaaattaagaaagtagatca |
29260493 |
T |
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