View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9608_low_14 (Length: 252)
Name: NF9608_low_14
Description: NF9608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9608_low_14 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 6989622 - 6989863
Alignment:
| Q |
11 |
cataggaacaagataggccaaaagtttggtattacgttggggttgttgaaatcacattgagacaccatgattttgcaaacgctaaacccggaaaacctac |
110 |
Q |
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| T |
6989622 |
cataggaacaagataggccaaaagtttggtattacggtggggttgttgaaatcacgttgagacaccatgattttgcaaacgctaaacccggaaaacctac |
6989721 |
T |
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| Q |
111 |
gtgatatcaaacatataaaacgtcatttatgttggaatacattcatctaaatataaaagtgagtaaacaataaattcaagattgaaaatcaattgtagag |
210 |
Q |
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| T |
6989722 |
gtgatatcaaacatataaaacatcatttatgttggaatacattcatctaaatataaaagtgagtaaacaataaattcaagattgaaaatcaattgtagag |
6989821 |
T |
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| Q |
211 |
tcaaaaacactaaattctagctctaaattctactcgagagga |
252 |
Q |
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| T |
6989822 |
tcaaaaacactaaattctagctctaaattctactcgagagga |
6989863 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 4411334 - 4411276
Alignment:
| Q |
178 |
caataaattcaagattgaaaatcaattgtagagtcaaaaacactaaattctagctctaa |
236 |
Q |
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| T |
4411334 |
caataaattcaaggctaaaaatcaattgtagaggcaaaagctcaaaattctagctctaa |
4411276 |
T |
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