View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9608_low_15 (Length: 250)
Name: NF9608_low_15
Description: NF9608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9608_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 3542425 - 3542187
Alignment:
| Q |
1 |
tttgacgagtctctgaaactcgacgctggatggttattaaaaagaaaatagaatgagagagaatttgagtaggagtaaaattaggagagtggagtgagct |
100 |
Q |
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| T |
3542425 |
tttgatgagtctctgaaacttgacgctggatggttattaaaaagaaaatagaatgagagagaatttgagtaggagtaaaattaggagagtggagtgagct |
3542326 |
T |
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| Q |
101 |
aaaataggagaaatagttgtaacaaattttattttatgatatggttttgaaattnnnnnnnnnnnngtaattttatgatatggatagggtattgagactt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3542325 |
aaaataggagaaatagttgtaacaaattttattttatgatatggttttgaaattaaaaataaaaaagtaattttatgatatggatagggtattgagactt |
3542226 |
T |
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| Q |
201 |
ttgaggtatgggaggggtcagagatagtttggtatctgtg |
240 |
Q |
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| T |
3542225 |
ttgaggtat-ggaggggtcagagatagtttggtatctgtg |
3542187 |
T |
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