View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9608_low_16 (Length: 242)

Name: NF9608_low_16
Description: NF9608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9608_low_16
NF9608_low_16
[»] chr8 (12 HSPs)
chr8 (1-240)||(5759212-5759452)
chr8 (1-240)||(13674060-13674305)
chr8 (1-240)||(20531328-20531572)
chr8 (1-240)||(31999249-31999493)
chr8 (1-240)||(33774139-33774384)
chr8 (1-240)||(14881696-14881940)
chr8 (1-240)||(14894046-14894290)
chr8 (1-234)||(23015016-23015254)
chr8 (10-240)||(11430667-11430900)
chr8 (184-240)||(31991661-31991717)
chr8 (10-103)||(7757604-7757694)
chr8 (10-103)||(17268682-17268772)
[»] chr1 (19 HSPs)
chr1 (1-240)||(18096941-18097185)
chr1 (1-240)||(26193448-26193693)
chr1 (1-240)||(27065895-27066140)
chr1 (10-240)||(20318052-20318288)
chr1 (1-240)||(20308676-20308920)
chr1 (10-240)||(22960708-22960943)
chr1 (1-234)||(25823464-25823702)
chr1 (1-234)||(37011811-37012049)
chr1 (10-151)||(20328465-20328612)
chr1 (10-106)||(20314369-20314464)
chr1 (1-104)||(21821584-21821686)
chr1 (10-240)||(49333163-49333397)
chr1 (52-106)||(25039563-25039617)
chr1 (10-89)||(21782530-21782610)
chr1 (184-234)||(41544102-41544152)
chr1 (10-104)||(41544239-41544330)
chr1 (184-217)||(25039445-25039478)
chr1 (186-226)||(4950529-4950569)
chr1 (176-240)||(21821442-21821505)
[»] chr4 (13 HSPs)
chr4 (1-240)||(16211178-16211423)
chr4 (1-240)||(16629339-16629584)
chr4 (1-240)||(7846759-7847006)
chr4 (1-155)||(17828589-17828749)
chr4 (1-155)||(17837980-17838140)
chr4 (1-234)||(44888563-44888801)
chr4 (10-240)||(53946294-53946528)
chr4 (29-240)||(16396756-16396974)
chr4 (188-240)||(17828515-17828567)
chr4 (188-240)||(17837906-17837958)
chr4 (1-103)||(2829368-2829469)
chr4 (186-234)||(2829559-2829607)
chr4 (10-88)||(15669028-15669103)
[»] chr6 (14 HSPs)
chr6 (1-240)||(791227-791473)
chr6 (10-240)||(26168184-26168419)
chr6 (9-240)||(16321124-16321361)
chr6 (9-240)||(16333272-16333509)
chr6 (1-236)||(18712285-18712526)
chr6 (1-155)||(26161713-26161873)
chr6 (1-240)||(1596262-1596506)
chr6 (1-240)||(26021113-26021358)
chr6 (1-240)||(24505410-24505654)
chr6 (1-155)||(17823920-17824079)
chr6 (1-106)||(30658283-30658386)
chr6 (1-103)||(16923397-16923498)
chr6 (184-234)||(30658137-30658187)
chr6 (10-88)||(29540298-29540373)
[»] scaffold0433 (1 HSPs)
scaffold0433 (1-240)||(13444-13689)
[»] chr7 (8 HSPs)
chr7 (1-239)||(27988321-27988565)
chr7 (1-240)||(24540831-24541076)
chr7 (1-240)||(45553003-45553247)
chr7 (1-240)||(19585582-19585826)
chr7 (1-234)||(10415512-10415750)
chr7 (10-104)||(12769937-12770029)
chr7 (202-240)||(12491336-12491374)
chr7 (202-240)||(12515150-12515188)
[»] scaffold0031 (1 HSPs)
scaffold0031 (1-240)||(111785-112030)
[»] chr5 (25 HSPs)
chr5 (1-240)||(18210016-18210261)
chr5 (1-240)||(18219354-18219599)
chr5 (1-240)||(21681449-21681694)
chr5 (13-240)||(34130694-34130927)
chr5 (1-240)||(4038184-4038429)
chr5 (1-240)||(19888559-19888803)
chr5 (1-240)||(42090721-42090966)
chr5 (10-240)||(37299019-37299255)
chr5 (1-238)||(31916618-31916861)
chr5 (1-240)||(37548810-37549054)
chr5 (1-240)||(37817406-37817651)
chr5 (1-240)||(27274386-27274630)
chr5 (1-240)||(20764165-20764407)
chr5 (1-240)||(13571885-13572129)
chr5 (1-240)||(22173455-22173699)
chr5 (1-155)||(30944075-30944235)
chr5 (1-155)||(30953497-30953657)
chr5 (1-155)||(37651693-37651852)
chr5 (1-104)||(20896760-20896862)
chr5 (1-104)||(205823-205925)
chr5 (184-234)||(205686-205736)
chr5 (188-240)||(30944001-30944053)
chr5 (188-240)||(30953423-30953475)
chr5 (1-104)||(20904878-20904980)
chr5 (205-240)||(37648204-37648239)
[»] chr3 (11 HSPs)
chr3 (1-240)||(19828242-19828487)
chr3 (1-240)||(2489571-2489815)
chr3 (1-240)||(13119970-13120214)
chr3 (1-240)||(20745075-20745319)
chr3 (1-240)||(4782979-4783224)
chr3 (1-229)||(13112869-13113102)
chr3 (1-240)||(12376359-12376603)
chr3 (1-128)||(18560793-18560926)
chr3 (10-155)||(51978849-51979000)
chr3 (106-240)||(20292953-20293086)
chr3 (55-103)||(20491937-20491985)
[»] chr2 (10 HSPs)
chr2 (1-240)||(45190643-45190888)
chr2 (1-240)||(12570392-12570638)
chr2 (1-240)||(574066-574310)
chr2 (10-155)||(22687760-22687912)
chr2 (1-219)||(16934316-16934540)
chr2 (1-219)||(17004976-17005200)
chr2 (27-240)||(37863027-37863245)
chr2 (10-234)||(3605933-3606161)
chr2 (1-62)||(24942733-24942794)
chr2 (28-104)||(24239168-24239243)
[»] scaffold0014 (3 HSPs)
scaffold0014 (2-240)||(114518-114761)
scaffold0014 (1-240)||(146499-146744)
scaffold0014 (1-132)||(153627-153764)
[»] scaffold0553 (1 HSPs)
scaffold0553 (1-240)||(860-1105)
[»] scaffold0141 (1 HSPs)
scaffold0141 (1-240)||(18567-18812)
[»] scaffold1705 (1 HSPs)
scaffold1705 (1-240)||(679-924)
[»] scaffold0058 (3 HSPs)
scaffold0058 (10-139)||(23924-24059)
scaffold0058 (184-240)||(29302-29358)
scaffold0058 (57-106)||(41283-41331)
[»] scaffold0018 (3 HSPs)
scaffold0018 (1-133)||(59840-59978)
scaffold0018 (1-133)||(54460-54598)
scaffold0018 (1-133)||(58412-58550)
[»] scaffold0706 (3 HSPs)
scaffold0706 (58-240)||(1977-2165)
scaffold0706 (1-62)||(4104-4165)
scaffold0706 (1-62)||(4317-4378)
[»] scaffold0265 (2 HSPs)
scaffold0265 (1-104)||(11123-11225)
scaffold0265 (176-240)||(11304-11367)
[»] scaffold1468 (1 HSPs)
scaffold1468 (10-240)||(1144-1378)
[»] scaffold0406 (1 HSPs)
scaffold0406 (1-104)||(15212-15313)
[»] scaffold0065 (1 HSPs)
scaffold0065 (10-88)||(15689-15764)


Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 5759212 - 5759452
Alignment:
Q  1 ctattagagttgatt-acatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacat 99  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5759212 ctattagagttgatttacatcaaaagttaagtcttgcaaattaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttctgcacat 5759311  T
Q  100 gcttccaacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgcgcagagattgacttatcccctgatcagtatcaagcaaatcttct 199  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5759312 gcttccaacagtgtagttggtggaaagatgaaaaagctagcaaaaggagatcttgcgcagagattgacttatcccctgatcagtatcaagcaaatcttct 5759411  T
Q  200 agaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  5759412 agaagcatgggcctgaagattgcagatccattatcctctct 5759452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 13674060 - 13674305
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| ||||||||||||||  |||||||||||||||||||||||||| ||||||||| || |||||||||||| || ||||||||    
T  13674060 ctattaggtttgattacattaaaagttaagtcttataaatcaacctaaagtaagaacaaatgaaacattctg-agatcagaatgttcacttctgcacatg 13674158  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    |||||       |||||||||||||||||||||||| ||||||||| ||||| |||||||||  |||||| | || | | | ||||   | |||||||||    
T  13674159 cttccagccatgaacagtgtagttggtggaaagatggaaaagctagcaaaaggagatcttgcatcagaga-taacgtgtactctgagatgaatcaagcaa 13674257  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||| || ||||||||||||||||||||||||||||| ||||||||||    
T  13674258 atctccttgaagcatgggcctgaagattgcagatccactatcctctct 13674305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 20531572 - 20531328
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||| || |||||||||||| || ||||||||    
T  20531572 ctattaggtttgattacattaaaagttaagtcttacaaatcaacctaaagtacgaacaaatggaacattctg-agatcagaatgttcacttctgcacatg 20531474  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    |||||       |||||||||||||||||||||||||||||||||| ||||| |||||||||  |||||| | || | ||| || ||  | || ||||||    
T  20531473 cttccagccatgaacagtgtagttggtggaaagatgaaaaagctagcaaaaggagatcttgcatcagaga-taacgtgtcctctaatttgaataaagcaa 20531375  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||| || |||||||||||||||||| |||||||||| ||||||||||    
T  20531374 atctccttgaagcatgggcctgaaga-tgcagatccactatcctctct 20531328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 31999493 - 31999249
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| || ||||||||    
T  31999493 ctattaggtttgattacattaaaagttaagtcttacaaatcaacctaaagtaagaacaaatggaacattctg-agatcagaatgttcacttctgcacatg 31999395  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    |||||       |||||||||||||||||||||||  |||||||||  |||| |||||||||  |||||| | || | | | ||||   | |||||||||    
T  31999394 cttccagccatgaacagtgtagttggtggaaagatcgaaaagctag-caaaggagatcttgcatcagaga-taacgtgtactctgagatgaatcaagcaa 31999297  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||| || ||||||||||||||||||||||||||||| ||||||||||    
T  31999296 atctccttgaagcatgggcctgaagattgcagatccactatcctctct 31999249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 33774384 - 33774139
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| || ||||||||    
T  33774384 ctattaggtttgattacattaaaagttaagtcttacaaatcaacctaaagtaagaacaaatggaacattctg-agatcagaatgttcacttctgcacatg 33774286  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    |||||       ||||||||| || ||||||||||| ||||||||| | ||| |||||||||  |||||| | || | | | || ||  | |||||||||    
T  33774285 cttccagccatgaacagtgtaattagtggaaagatggaaaagctagcagaaggagatcttgcatcagaga-taacgtgtactcttatatgaatcaagcaa 33774187  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||| || ||||||||||||||||||||||||||||| ||||||||||    
T  33774186 atctccttgaagcatgggcctgaagattgcagatccactatcctctct 33774139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 14881940 - 14881696
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||| || |||||||||||| || ||||||||    
T  14881940 ctattaggtttgattacattaaaagttaagtcttataaatcaacctaaagtaagaacaaatggaacattctg-agatcagaatgttcacttctgcacatg 14881842  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    |||||       |||||||||||||||||||||||| |||||||||  |||| |||||||||  |||||| | || | | | ||||   | ||| |||||    
T  14881841 cttccagccatgaacagtgtagttggtggaaagatggaaaagctag-caaaggagatcttgcatcagaga-taacgtgtactctgagatgaatccagcaa 14881744  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||| || ||||||||||||||||||||||||||||| ||||||||||    
T  14881743 atctccttgaagcatgggcctgaagattgcagatccactatcctctct 14881696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 14894290 - 14894046
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||| || |||||||||||| || ||||||||    
T  14894290 ctattaggtttgattacattaaaagttaagtcttataaatcaacctaaagtaagaacaaatggaacattctg-agatcagaatgttcacttctgcacatg 14894192  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    |||||       |||||||||||||||||||||||| |||||||||  |||| |||||||||  |||||| | || | | | ||||   | ||| |||||    
T  14894191 cttccagccatgaacagtgtagttggtggaaagatggaaaagctag-caaaggagatcttgcatcagaga-taacgtgtactctgagatgaatccagcaa 14894094  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||| || ||||||||||||||||||||||||||||| ||||||||||    
T  14894093 atctccttgaagcatgggcctgaagattgcagatccactatcctctct 14894046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 23015254 - 23015016
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||||||||||  |||||| ||||||| |||||||||||| |||||| |||||||||| |||||||||||||| |||||||||||    
T  23015254 ctattagtattgattacatcaaaagt--agtcttacaaatcatcctaaagtaagagcaaatgaaacattctgatggtcagaatgttcacttttgcacatg 23015157  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    |||||       || |||||||||||| |||||| ||||||| ||| ||| | |||||||||  |||||| | || | | | ||||  |  |||||||||    
T  23015156 cttccagctatgaatagtgtagttggtagaaagaagaaaaagatagcaaagggagatcttgcatcagaga-taacgtgtactctgaataaaatcaagcaa 23015058  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatc 234  Q
    |||| || ||||||| ||||||||||||||||||||| ||||    
T  23015057 atctccttgaagcattggcctgaagattgcagatccactatc 23015016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 240
Target Start/End: Complemental strand, 11430900 - 11430667
Alignment:
Q  10 ttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatgcttcc---- 105  Q
    |||||||||||||||||  |||||| ||||||| |||||||||||| |||||| || || |||| |||||||||||||| |  |||||||||||||        
T  11430900 ttgattacatcaaaagt--agtcttacaaatcatcctaaagtaagatcaaatgaaaaat-ctgatggtcagaatgttcactcctgcacatgcttccagct 11430804  T
Q  106 ---aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaaatcttctag 201  Q
       ||||||||||||||| |||||| ||||||| ||| ||||| |||||||||   ||||| | |||| | | |||| ||  ||| || |||||| ||||    
T  11430803 atgaacagtgtagttggtagaaagaagaaaaaggtagcaaaaggagatcttgcataagaga-taacttgtactctgaacaaaatctagaaaatctcctag 11430705  T
Q  202 aagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||||||||||||||| |||||||  || ||||||||||    
T  11430704 aagcatgggcctgaag-ttgcagactcactatcctctct 11430667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 31991717 - 31991661
Alignment:
Q  184 atcaagcaaatcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    ||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||    
T  31991717 atcaagcaaatctccttgaagcatgggcctgaagattgcagatccactatcctctct 31991661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 103
Target Start/End: Original strand, 7757604 - 7757694
Alignment:
Q  10 ttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatgctt 103  Q
    |||||||||||||| | || ||||| ||||||| ||||| |||| |||| |||||||||||||| ||||| ||||||||  | |||||||||||    
T  7757604 ttgattacatcaaatggta-gtcttacaaatcatcctaa-gtaa-aacagatggaacattctgatggtcaaaatgttcagctctgcacatgctt 7757694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 103
Target Start/End: Original strand, 17268682 - 17268772
Alignment:
Q  10 ttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatgctt 103  Q
    |||||||||||||| | || ||||| ||||||| ||||| || | |||||| |||||||||||| ||||||||||||||  | |||||||||||    
T  17268682 ttgattacatcaaatggta-gtcttacaaatcatcctaa-gtga-aacaaaaggaacattctgatggtcagaatgttcagctctgcacatgctt 17268772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 4e-62; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 18097185 - 18096941
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||| |||| |||||||||||| ||||||| ||||||| ||||||||||||||||| |||||||||| | ||||||||||||||| ||||||||||    
T  18097185 ctattagaattgactacatcaaaagt-aagtcttacaaatcatcctaaagtaagaacaaaaggaacattctaatggtcagaatgttcatctttgcacatg 18097087  T
Q  101 cttccaac-------agtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgcgcagagattgacttatcccctgatcagtatcaagcaaa 193  Q
    |||||| |       ||||||||||||||||||||||||||||||| ||||  |||||||||  ||||||  | |||||| |||||||||||||||||||    
T  18097086 cttccagctatgaatagtgtagttggtggaaagatgaaaaagctagaaaaaagagatcttgcttagagatataattatcctctgatcagtatcaagcaaa 18096987  T
Q  194 tcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||||||||||||||||| ||||| |||||||| || ||||||||||    
T  18096986 tcttctagaagcatgggcttgaag-ttgcagattcactatcctctct 18096941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 26193693 - 26193448
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||| || ||||||||    
T  26193693 ctattaggtttgattacattaaaagttaagtcttacaaatcaacctaaagtaagaacaaatggaacattctgaa-atcagaatgttcacttctgcacatg 26193595  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
     ||||       |||||||||||||||||||||||| ||||||||| ||||| |||||||||  |||||| | || | | | |||| ||  |||||||||    
T  26193594 tttccagccatgaacagtgtagttggtggaaagatggaaaagctagcaaaaggagatcttgcatcagaga-taacgtgtactctgaacaaaatcaagcaa 26193496  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||| || ||||||||||||||||||||||||||||| ||||||||||    
T  26193495 atctccttgaagcatgggcctgaagattgcagatccactatcctctct 26193448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 27065895 - 27066140
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |  |||||||||||| || ||||||||    
T  27065895 ctattaggtttgattacattaaaagttaagtcttacaaatcaacctaaagtaagaacaaatggaacattctg-atatcagaatgttcacttctgcacatg 27065993  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgcg-cagagattgacttatcccctgatcagtatcaagcaa 192  Q
    |||||       |||||||||||||||||||||||| ||||||||| ||||| |||||||||| |||||| | || | | | ||||   | |||||||||    
T  27065994 cttccagccatgaacagtgtagttggtggaaagatggaaaagctagcaaaaggagatcttgcgtcagaga-taacgtgtactctgagatgaatcaagcaa 27066092  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||| ||  |||||||||||||||||||||||||||| ||||||||||    
T  27066093 atctcctttaagcatgggcctgaagattgcagatccactatcctctct 27066140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 10 - 240
Target Start/End: Complemental strand, 20318288 - 20318052
Alignment:
Q  10 ttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatgcttcc---- 105  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||| || |||||||||||||        
T  20318288 ttgattacattaaaagttaagtcttacaaatcaacctaaagtaagaacaaatggaacattct-aagatcagaatgttcacttctgcacatgcttccagcc 20318190  T
Q  106 ---aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaaatcttctag 201  Q
       |||||||||||||||||||| ||| ||||||||| ||||| |||||||||  |||||| | || | | | ||||   | ||||||||||||| || |    
T  20318189 atgaacagtgtagttggtggaaaaatggaaaagctagcaaaaggagatcttgcatcagaga-taacgtgtactctgagatgaatcaagcaaatctccttg 20318091  T
Q  202 aagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||||||||| ||||||||||||||||| ||||||||||    
T  20318090 aagcatgggcttgaagattgcagatccactatcctctct 20318052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 20308676 - 20308920
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||| || ||||||||    
T  20308676 ctattaggtttgattacattaaaagttaagtcttacaaatcaacctaaagtaagaacaaatggaacattctgaa-atcagaatgttcacttctgcacatg 20308774  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    |||||       |||||||||||||||| ||||||| |||||||||  |||| |||||||||  |||||| | || | | | |||||  | |||||||||    
T  20308775 cttccagccatgaacagtgtagttggtgaaaagatggaaaagctag-caaaggagatcttgcatcagaga-taacgtgtactctgatatgaatcaagcaa 20308872  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    ||||  | ||||||||||||||||||||||||||||| ||||||||||    
T  20308873 atctctttgaagcatgggcctgaagattgcagatccactatcctctct 20308920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 10 - 240
Target Start/End: Original strand, 22960708 - 22960943
Alignment:
Q  10 ttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatgcttcc---- 105  Q
    |||||||||| |||||| ||||||| ||||||| ||||||||||||||||| |||||||||||| |||||||||||| || | |||||||||||||        
T  22960708 ttgattacattaaaagt-aagtcttacaaatcatcctaaagtaagaacaaaaggaacattctgatggtcagaatgttaatctctgcacatgcttccagct 22960806  T
Q  106 ---aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaaatcttctag 201  Q
       |||| ||||||||||||||||||||||||| ||| ||||| |||||||||  |||||| | |||| ||| |||| ||   |||||||||||| ||||    
T  22960807 atgaacaatgtagttggtggaaagatgaaaaaggtagaaaaaggagatcttgcatcagaga-taacttgtcctctgaacaaattcaagcaaatctcctag 22960905  T
Q  202 aagcatgggcctgaagattgcagatccattatcctctct 240  Q
    ||| ||||| ||||||| |||||||||| ||||||||||    
T  22960906 aaggatgggtctgaaga-tgcagatccactatcctctct 22960943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 25823702 - 25823464
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||||||||||  |||||| ||||||| |||||||||||| |||||| |||||||||| ||||||||||||||| | ||| ||||    
T  25823702 ctattaggattgattacatcaaaagt--agtcttacaaatcatcctaaagtaagagcaaatgaaacattctgatggtcagaatgttcatctatgcgcatg 25823605  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    |||||       |||||||||||||||||||||||||||||| ||| ||||| ||||| |||  |||||| | |||| | | |||| ||  |||||||||    
T  25823604 cttccagctatgaacagtgtagttggtggaaagatgaaaaaggtagcaaaaggagatcatgcatcagaga-taacttgtactctgaacaaaatcaagcaa 25823506  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatc 234  Q
    ||||  |||| |||||||||||||||||||| ||||| ||||    
T  25823505 atctcttagatgcatgggcctgaagattgcatatccactatc 25823464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 37011811 - 37012049
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||| | |||||||||||||||||  |||||| ||||||| |||||||||||| |||||| |||||||||| |||||||||||||| || ||||||||    
T  37011811 ctattataattgattacatcaaaagt--agtcttacaaatcatcctaaagtaagagcaaatgaaacattctgatggtcagaatgttcacttctgcacatg 37011908  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    |||||       ||||||||||||||| |||||| ||||||| ||| ||||| |||| ||||  |||||| | || | | | |||| ||  |||||||||    
T  37011909 cttccagctatgaacagtgtagttggtagaaagaagaaaaaggtagcaaaaggagatattgcatcagaga-taacgtgtactctgaacaaaatcaagcaa 37012007  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatc 234  Q
    |||| |||||||||| ||||||||||||||||||||| ||||    
T  37012008 atctcctagaagcataggcctgaagattgcagatccactatc 37012049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 10 - 151
Target Start/End: Complemental strand, 20328612 - 20328465
Alignment:
Q  10 ttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatgcttcc---- 105  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| || |||||||||||||        
T  20328612 ttgattacattaaaagttaagtcttacaaatcaacctaaagtaagaacaaatggaacattctg-agatcagaatgttcacttctgcacatgcttccagcc 20328514  T
Q  106 ---aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatc 151  Q
       |||||||||||||||||||| ||| ||||||||| ||||| |||||    
T  20328513 atgaacagtgtagttggtggaaaaatggaaaagctagcaaaaggagatc 20328465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 20314369 - 20314464
Alignment:
Q  10 ttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatgcttcca 106  Q
    |||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||| || |||||||||||| || ||||||||||||||    
T  20314369 ttgattacattaaaagttaagtcttacaaatcaacctaacgtaagaacaaatggaacattctg-agatcagaatgttcacttctgcacatgcttcca 20314464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 21821686 - 21821584
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  ||||||||| ||||||| ||||||| ||||||| ||||||||||||| ||| |||||||||||||||| ||||||||||| | ||||||||    
T  21821686 ctattaggattgattacaacaaaagt-aagtcttacaaatcatcctaaagtaagaaaaaaaggaacattctgaaggttagaatgttcatctctgcacatg 21821588  T
Q  101 cttc 104  Q
    ||||    
T  21821587 cttc 21821584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 240
Target Start/End: Original strand, 49333163 - 49333397
Alignment:
Q  10 ttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatgcttcc---- 105  Q
    |||||||||||||||||  |||||| |||||||  ||||||||||| |||||| |||||||||| |||||||||||||| |  ||||||| |||||        
T  49333163 ttgattacatcaaaagt--agtcttacaaatcattctaaagtaagatcaaatgaaacattctgatggtcagaatgttcactcctgcacatccttccagct 49333260  T
Q  106 ---aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaaatcttctag 201  Q
       |||| |||||||| | |||||| ||||||| ||| ||||| ||||||| |  |||||| | |||| | | |||| ||  ||| ||||||||| ||||    
T  49333261 atgaacaatgtagttgatagaaagaagaaaaaggtagcaaaaggagatcttacatcagaga-taacttgtactctgaacaaaatctagcaaatctcctag 49333359  T
Q  202 aagcatgggcctgaagattgcagatccattatcctctct 240  Q
    ||||||||| |||||| ||||||| ||| ||||||||||    
T  49333360 aagcatgggtctgaag-ttgcagacccactatcctctct 49333397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 25039617 - 25039563
Alignment:
Q  52 aagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatgcttcca 106  Q
    ||||||||||||||||||||||| ||||||||||||| | |||||||||||||||    
T  25039617 aagaacaaatggaacattctgaatgtcagaatgttcactcttgcacatgcttcca 25039563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 89
Target Start/End: Original strand, 21782530 - 21782610
Alignment:
Q  10 ttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaat--ggaacattctgaaggtcagaatgttcat 89  Q
    ||||||||||||||||| ||||||  |||||||  |||||||||||| |||   ||||||||||||||||||||||||||||    
T  21782530 ttgattacatcaaaagt-aagtctcacaaatcattctaaagtaagaaaaaaaaaggaacattctgaaggtcagaatgttcat 21782610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 41544152 - 41544102
Alignment:
Q  184 atcaagcaaatcttctagaagcatgggcctgaagattgcagatccattatc 234  Q
    ||||||||||||  |||||||||||| | ||||||||||||||||| ||||    
T  41544152 atcaagcaaatcgcctagaagcatggacttgaagattgcagatccaatatc 41544102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 104
Target Start/End: Complemental strand, 41544330 - 41544239
Alignment:
Q  10 ttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatgcttc 104  Q
    |||||||||||||| | || ||||| ||||||| ||||| || | |||| |||||||||||||| ||||||||||||||  | ||||||||||||    
T  41544330 ttgattacatcaaatggta-gtcttacaaatcatcctaa-gtga-aacagatggaacattctgatggtcagaatgttcagctctgcacatgcttc 41544239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 217
Target Start/End: Complemental strand, 25039478 - 25039445
Alignment:
Q  184 atcaagcaaatcttctagaagcatgggcctgaag 217  Q
    ||||||||||||| ||||||||||||||||||||    
T  25039478 atcaagcaaatctcctagaagcatgggcctgaag 25039445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 4950529 - 4950569
Alignment:
Q  186 caagcaaatcttctagaagcatgggcctgaagattgcagat 226  Q
    ||||||||||| |||||| |||| |||||||||||||||||    
T  4950529 caagcaaatctcctagaaacatgagcctgaagattgcagat 4950569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 21821505 - 21821442
Alignment:
Q  176 tgatcagtatcaagcaaatcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    ||||||| |||||| |||||| ||| ||||||||||||||||| ||||| |||| ||| ||||||    
T  21821505 tgatcagaatcaagaaaatctcctataagcatgggcctgaaga-tgcaggtccactattctctct 21821442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 16211423 - 16211178
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||| |  ||||||||    
T  16211423 ctattagagttgattacatcaaaagttaagtcttacaaatcaacctaaagtaagaacaaatagaacattctgatggtcagaatgttcactcctgcacatg 16211324  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    |||||       |||||||||||||||||||||||||||||| ||| ||||| |||||||||  |||||| | |||| | | |||| ||  |||||||||    
T  16211323 cttccagctatgaacagtgtagttggtggaaagatgaaaaaggtagcaaaaggagatcttgcatcagaga-taacttgtactctgaacaaaatcaagcaa 16211225  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||| |||||||||||||||||||| ||||||| ||| ||||||||||    
T  16211224 atctcctagaagcatgggcctgaag-ttgcagacccactatcctctct 16211178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 16629339 - 16629584
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| || ||||||||    
T  16629339 ctattaggtttgattacattaaaagttaagtcttacaaatcaacctaaagtaagaacaaatggaacattctg-agatcagaatgttcacttctgcacatg 16629437  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    |||||       |||||||||||||||||||||||| ||||||||| ||||| |||||||||  |||||| | || | | | ||||   | |||||||||    
T  16629438 cttccagccatgaacagtgtagttggtggaaagatggaaaagctagcaaaaggagatcttgcatcagaga-taacgtgtactctgagatgaatcaagcaa 16629536  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||| || ||||||||||||||||||||||||||||| ||||||||||    
T  16629537 atctccttgaagcatgggcctgaagattgcagatccactatcctctct 16629584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 7847006 - 7846759
Alignment:
Q  1 ctattagagttgattacatcaaaagtt-aagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacat 99  Q
    |||||||  |||||||||| |||| || ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||    
T  7847006 ctattaggtttgattacattaaaaatttaagtcttacaaatcaacctaaagtaagaacaaatggaacattctgaagatcagaatgttcacttctgcacat 7846907  T
Q  100 gcttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagca 191  Q
    ||||||       |||||| |||||||||||||| || ||||||||| ||||| |||||||||  |||||| | || | | | |||||  | ||||||||    
T  7846906 gcttccagccatgaacagtatagttggtggaaagttggaaaagctagcaaaaggagatcttgcatcagaga-taacgtgtactctgatatgaatcaagca 7846808  T
Q  192 aatcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
     |||| || |||||||||||||||||||| |||||||| ||||||||||    
T  7846807 tatctccttgaagcatgggcctgaagattacagatccactatcctctct 7846759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 17828749 - 17828589
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| ||||||||||||||  |||||||||||||||||||||||||| ||||||||| || |||||||||||| || ||||||||    
T  17828749 ctattaggtttgattacattaaaagttaagtcttataaatcaacctaaagtaagaacaaatgaaacattctg-agatcagaatgttcacttctgcacatg 17828651  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc 155  Q
    |||||       |||||||||||||||||||||||| ||||||||| ||||| |||||||||    
T  17828650 cttccagccatgaacagtgtagttggtggaaagatggaaaagctagcaaaaggagatcttgc 17828589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 17838140 - 17837980
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| ||||||||||||||  |||||||||||||||||||||||||| ||||||||| || |||||||||||| || ||||||||    
T  17838140 ctattaggtttgattacattaaaagttaagtcttataaatcaacctaaagtaagaacaaatgaaacattctg-agatcagaatgttcacttctgcacatg 17838042  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc 155  Q
    |||||       |||||||||||||||||||||||| ||||||||| ||||| |||||||||    
T  17838041 cttccagccatgaacagtgtagttggtggaaagatggaaaagctagcaaaaggagatcttgc 17837980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 44888563 - 44888801
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||||||||||   ||||| ||||||| | |||||||||| |||||| |||||||||| |||||||||||||| || ||||||||    
T  44888563 ctattaggattgattacatcaaaagtc--gtcttacaaatcatcataaagtaagagcaaatgaaacattctgatggtcagaatgttcacttctgcacatg 44888660  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    |||||       ||||||||||||||| |||||| ||||||| ||| ||||| |||||||||  |||||| | || | | |  ||| ||  |||||||||    
T  44888661 cttccagctatgaacagtgtagttggtagaaagaagaaaaaggtagcaaaaggagatcttgcatcagaga-taacgtgtactttgaacaaaatcaagcaa 44888759  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatc 234  Q
    |||| ||||||||||| |||||||||||||||||||| ||||    
T  44888760 atctcctagaagcatgagcctgaagattgcagatccactatc 44888801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 240
Target Start/End: Complemental strand, 53946528 - 53946294
Alignment:
Q  10 ttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatgcttc----- 104  Q
    |||||||||||||||||  |||| | ||||||| |||||||||||| |||||| |||||||||| | |||||||||||| |  ||||||||||||         
T  53946528 ttgattacatcaaaagt--agtcctacaaatcatcctaaagtaagatcaaatgaaacattctgatgatcagaatgttcactcctgcacatgcttctaact 53946431  T
Q  105 --caacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaaatcttctag 201  Q
       ||||||||||||||| |||||| ||||||| ||| ||||| |||||||||  |||| | | |||| | | |||| ||  ||| ||||||||| ||||    
T  53946430 atgaacagtgtagttggtagaaagaagaaaaagttagcaaaaggagatcttgcatcagata-taacttgtactctgaacaaaatctagcaaatctcctag 53946332  T
Q  202 aagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||||||  ||||||| ||||||| ||| ||||||||||    
T  53946331 aagcatgaacctgaag-ttgcagacccactatcctctct 53946294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 29 - 240
Target Start/End: Original strand, 16396756 - 16396974
Alignment:
Q  29 agtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatgcttccaac-------agtgtagttggtg 121  Q
    |||||| ||||||| |||||||||||| |||||| |||||||||| ||||||||||||||| | | |||||||||| |||       |||||||||||||    
T  16396756 agtcttacaaatcatcctaaagtaagagcaaatgaaacattctgatggtcagaatgttcatctctacacatgcttctaactatgaatagtgtagttggtg 16396855  T
Q  122 gaaagatgaaaaagc-tagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaaatcttctagaagcatgggcctgaagat 219  Q
     |||| | |  ||||  || ||||| |||||||||  |||||| | |||| | | |||| ||  |||||| |||| | ||||||||||||||||||||||    
T  16396856 aaaag-ttagcaagcaaagcaaaaggagatcttgcatcagaga-taacttgtactctgaacaaaatcaagaaaatttcctagaagcatgggcctgaagat 16396953  T
Q  220 tgcagatccattatcctctct 240  Q
    |||||||||| ||||||||||    
T  16396954 tgcagatccactatcctctct 16396974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 17828567 - 17828515
Alignment:
Q  188 agcaaatcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    ||||||||| || ||||||||||||||||||||||||||||| ||||||||||    
T  17828567 agcaaatctccttgaagcatgggcctgaagattgcagatccactatcctctct 17828515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 17837958 - 17837906
Alignment:
Q  188 agcaaatcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    ||||||||| || ||||||||||||||||||||||||||||| ||||||||||    
T  17837958 agcaaatctccttgaagcatgggcctgaagattgcagatccactatcctctct 17837906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 2829368 - 2829469
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||||||||  || ||||| ||||||| | |||||||| | |||||| |||||| ||| ||||||||| ||||| ||||||||||    
T  2829368 ctattaggattgattacatcaaaaagta-gtcttacaaatcatcttaaagtaaaagcaaatgaaacattttgatggtcagaattttcatctttgcacatg 2829466  T
Q  101 ctt 103  Q
    |||    
T  2829467 ctt 2829469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 2829559 - 2829607
Alignment:
Q  186 caagcaaatcttctagaagcatgggcctgaagattgcagatccattatc 234  Q
    |||||||||||  ||||||||||||||||||||||||||||||| ||||    
T  2829559 caagcaaatctcatagaagcatgggcctgaagattgcagatccactatc 2829607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 88
Target Start/End: Original strand, 15669028 - 15669103
Alignment:
Q  10 ttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttca 88  Q
    |||||||||||||| | || ||||| ||||||| || ||||| | ||||||||||||||||||| ||||||||||||||    
T  15669028 ttgattacatcaaatggta-gtcttacaaatcatcc-aaagtga-aacaaatggaacattctgatggtcagaatgttca 15669103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 114; Significance: 6e-58; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 791473 - 791227
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |  ||||||||    
T  791473 ctattaggtttgattacattaaaagttaagtcttacaaatcaacctaaagtaagaacaaatggaacattctgaagatcagaatgttcactcctgcacatg 791374  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    |||||       |||||||||||||||||||||| ||||||||||| ||||| |||||||||  |||||| | |||| | | || | ||  |||||||||    
T  791373 cttccagccatgaacagtgtagttggtggaaagaagaaaaagctagcaaaaggagatcttgcatcagaga-taacttgtactcttaacaaaatcaagcaa 791275  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||| || ||||||||||||||||||||||||||||| ||||||||||    
T  791274 atctcctggaagcatgggcctgaagattgcagatccactatcctctct 791227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 10 - 240
Target Start/End: Original strand, 26168184 - 26168419
Alignment:
Q  10 ttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatgcttcc---- 105  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| || |||||||||||||        
T  26168184 ttgattacattaaaagttaagtcttacaaatcaacctaaagtaagaacaaatggaacattctg-agatcagaatgttcacttctgcacatgcttccagcc 26168282  T
Q  106 ---aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaaatcttctag 201  Q
       |||||||||||||||||||||||||||||||||| ||||| |||||||||  |||||| | || |||||  ||||  | ||||||||||||| || |    
T  26168283 atgaacagtgtagttggtggaaagatgaaaaagctagcaaaaggagatcttgcatcagaga-taacgtatcctatgatttgaatcaagcaaatctccttg 26168381  T
Q  202 aagcatgggcctgaagattgcagatccattatcctctct 240  Q
    ||||||||||||||||  |||||||||| ||||||||||    
T  26168382 aagcatgggcctgaag-gtgcagatccactatcctctct 26168419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 16321124 - 16321361
Alignment:
Q  9 gttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatgcttcc--- 105  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||| || |||||||||||||       
T  16321124 gttgattacattaaaagttaagtcttacaaatcaacctaaagtaagaacaaattgaacattctgaagatcagaatgttcacttctgcacatgcttccagc 16321223  T
Q  106 ----aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaaatcttcta 200  Q
        ||||||  |||||||||||||||| ||||||||| ||||| |||||||||  |||||| | || |||||  ||||  | ||||||||||||| ||     
T  16321224 catgaacagtacagttggtggaaagatggaaaagctagcaaaaggagatcttgcatcagaga-taacgtatcctttgatttgaatcaagcaaatctcctt 16321322  T
Q  201 gaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||||||||||||||||| |||||||||| ||||||||||    
T  16321323 gaagcatgggcctgaaga-tgcagatccactatcctctct 16321361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 9 - 240
Target Start/End: Original strand, 16333272 - 16333509
Alignment:
Q  9 gttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatgcttcc--- 105  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||| || |||||||||||||       
T  16333272 gttgattacattaaaagttaagtcttacaaatcaacctaaagtaagaacaaattgaacattctgaagatcagaatgttcacttctgcacatgcttccagc 16333371  T
Q  106 ----aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaaatcttcta 200  Q
        ||||||  |||||||||||||||| ||||||||| ||||| |||||||||  |||||| | || |||||  ||||  | ||||||||||||| ||     
T  16333372 catgaacagtacagttggtggaaagatggaaaagctagcaaaaggagatcttgcatcagaga-taacgtatcctttgatttgaatcaagcaaatctcctt 16333470  T
Q  201 gaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||||||||||||||||| |||||||||| ||||||||||    
T  16333471 gaagcatgggcctgaaga-tgcagatccactatcctctct 16333509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 18712526 - 18712285
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||| |||||||||||| |||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  18712526 ctattaaagttgattacattaaaagtcaagtcttacaaatcaacctaaagtaagaacaaatgaaacattctgaaggtcagaatgttcatttctgcacatg 18712427  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    ||| |       |||||||||||||||||||||||| ||||||||| ||||| |||||||||  |||||| | || | ||| || ||  | |||||||||    
T  18712426 ctttcaaccatgaacagtgtagttggtggaaagatgtaaaagctagcaaaaggagatcttgcatcagaga-taacgtgtcctcttatttgaatcaagcaa 18712328  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatcct 236  Q
    |||| || |||||||||||||||||| || ||||||| ||||||    
T  18712327 atctccttgaagcatgggcctgaaga-tgtagatccactatcct 18712285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 26161713 - 26161873
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| || ||||||||    
T  26161713 ctattagagttgattacattaaaagttaagtcttacaaatcaacctaaagtaagaacaaatggaacattctg-agatcagaatgttcacttctgcacatg 26161811  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc 155  Q
    |||||       |||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  26161812 cttccagccatgaacagtgtagttggtggaaagatgaaaaagctagcaaaaggagatcttgc 26161873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 1596262 - 1596506
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| || ||||||||    
T  1596262 ctattaggtttgattacattaaaagttaagtcttacaaatcaacctaaagtaagaacaaatggaacattctg-agatcagaatgttcacttctgcacatg 1596360  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    |||||       |||||||||||||||||||||||| ||||||||| ||||| |||||||||    |||| | || | | | |||| ||  |||||||||    
T  1596361 cttccagccatgaacagtgtagttggtggaaagatggaaaagctagcaaaaggagatcttgcattggaga-taacatgtactctgaacaaaatcaagcaa 1596459  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||| || |||||||||||||||||| |||||||||||||||||||||    
T  1596460 atctccttgaagcatgggcctgaaga-tgcagatccattatcctctct 1596506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 26021358 - 26021113
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| ||||||||||||||   ||||||||||||||||||||||||||||||||||| || |||||||||||| || ||||||||    
T  26021358 ctattaggtttgattacattaaaagttaagtcttatcaatcaacctaaagtaagaacaaatggaacattctg-agatcagaatgttcacttctgcacatg 26021260  T
Q  101 cttcc-------aacagtgtagttggtggaaagat-gaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagca 191  Q
    |||||       ||||||||||||||||||||||| ||||||||||| ||| | |||||||||  |||||| | |  | | | ||||   | ||||||||    
T  26021259 cttccagccatgaacagtgtagttggtggaaagatggaaaaagctagcaaatg-agatcttgcatcagaga-taatgtgtactctgagatgaatcaagca 26021162  T
Q  192 aatcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    ||||| || ||||||||||||||||||||||||||||| ||||||||||    
T  26021161 aatctccttgaagcatgggcctgaagattgcagatccactatcctctct 26021113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 24505654 - 24505410
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||| | || ||||||||    
T  24505654 ctattaggtttgattacattaaaagttaagtcttacaaatcaacctaaagtaagaacaaatggaacattctg-agatcagaatgtttacttctgcacatg 24505556  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
     ||||       ||||||||||||||| |||||||| ||||||||| ||||| | |||||||  |||||| | || | | | |||||  | |||||||||    
T  24505555 tttccatccatgaacagtgtagttggtagaaagatggaaaagctagcaaaaggatatcttgcatcagaga-taacgtgtactctgatatgaatcaagcaa 24505457  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||| || |||||||| ||||||||| |||||||||| ||||||||||    
T  24505456 atctccttgaagcatgagcctgaaga-tgcagatccactatcctctct 24505410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 17823920 - 17824079
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||||||||||  |||||| || |||| |||||||||||| |||||| |||||||||| |||||||||||||| |||||||||||    
T  17823920 ctattaggattgattacatcaaaagt--agtcttacatatcatcctaaagtaagagcaaatgaaacattctgatggtcagaatgttcacttttgcacatg 17824017  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc 155  Q
    |||||       || |||||||||||| |||||| ||||||| ||| ||| | |||||||||    
T  17824018 cttccagctatgaatagtgtagttggtagaaagaagaaaaagatagcaaagggagatcttgc 17824079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 30658386 - 30658283
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||||||||||  |||||| ||||||| |||||||||||| |||||| |||||||||| |||||||||||||| || ||||||||    
T  30658386 ctattaggattgattacatcaaaagt--agtcttacaaatcatcctaaagtaagagcaaatgaaacattctgatggtcagaatgttcacttctgcacatg 30658289  T
Q  101 cttcca 106  Q
    ||||||    
T  30658288 cttcca 30658283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 16923397 - 16923498
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||||||||  || ||||| ||||||| | |||||||||| |||||| |||||||| | ||||||||||||||| | ||||||||    
T  16923397 ctattaggattgattacatcaaaaagta-gtcttacaaatcatcttaaagtaagagcaaatgaaacattcttatggtcagaatgttcatctctgcacatg 16923495  T
Q  101 ctt 103  Q
    |||    
T  16923496 ctt 16923498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 30658187 - 30658137
Alignment:
Q  184 atcaagcaaatcttctagaagcatgggcctgaagattgcagatccattatc 234  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||| ||||    
T  30658187 atcaagcaaatctcctagaagcatggacctgaagattgcagatccactatc 30658137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 88
Target Start/End: Original strand, 29540298 - 29540373
Alignment:
Q  10 ttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttca 88  Q
    |||||||||||||| | || ||||| ||||||| ||||| || | ||||||||||||||||||| ||||||||||||||    
T  29540298 ttgattacatcaaatggta-gtcttacaaatcatcctaa-gtga-aacaaatggaacattctgatggtcagaatgttca 29540373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 13689 - 13444
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| || ||||||||    
T  13689 ctattaggtttgattacattaaaagttaagtcttacaaatcaacctaaagtaagaacaaatggaacattctg-agatcagaatgttcacttctgcacatg 13591  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    |||||       |||||||||||||||||||||||| ||||||||| ||||| |||||||||  |||||| | || | | | ||||   | |||||||||    
T  13590 cttccagccatgaacagtgtagttggtggaaagatggaaaagctagcaaaaggagatcttgcatcagaga-taacgtgtactctgagatgaatcaagcaa 13492  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||| || ||||||||||||||||||||||||||||||||||||||||    
T  13491 atctccttgaagcatgggcctgaagattgcagatccattatcctctct 13444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 6e-55; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 27988321 - 27988565
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||| || ||||||||    
T  27988321 ctattaggtttgattacattaaaagttaagtcttacaaatcaacctaaagtaagaacaaatggaacattct-aagatcagaatgttcacttctgcacatg 27988419  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    |||||       |||||||||||||||||||||||| ||||||||| ||||| |||||||||  |||||| | || | | | |||||  | |||||||||    
T  27988420 cttccagccatgaacagtgtagttggtggaaagatggaaaagctagcaaaaggagatcttgcatcagaga-taacgtgtactctgatatgaatcaagcaa 27988518  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatcctctc 239  Q
    |||| || ||||||||||||||||||||||||||||| |||||||||    
T  27988519 atctccttgaagcatgggcctgaagattgcagatccactatcctctc 27988565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 24541076 - 24540831
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||| || || |||||||||||| || ||||||||    
T  24541076 ctattaggtttgattacattaaaagttaagtcttataaatcaacctaaagtaagaacaaatggaacattatg-agatcagaatgttcacttctgcacatg 24540978  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    |||||       |||||||||||||||||||||||| ||||| ||| ||||| |||||||||  |||||| | || | | | |||| ||  |||||||||    
T  24540977 cttccagccatgaacagtgtagttggtggaaagatggaaaagttagcaaaaggagatcttgcatcagaga-taacgtgtactctgaacaaaatcaagcaa 24540879  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    ||||  | ||||||||||||||||||||||||||||| ||||||||||    
T  24540878 atctctttgaagcatgggcctgaagattgcagatccactatcctctct 24540831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 45553003 - 45553247
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||| || |||||||||||| || ||||||||    
T  45553003 ctattaggtttgattacattaaaagttaagtcttataaatcaacctaaagtaagaacaaatggaacattctg-agatcagaatgttcacttctgcacatg 45553101  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    |||||       |||||||||||||||||||||||| |||||||||  |||| |||||||||  |||||| | || | | | |||||  | |||||||||    
T  45553102 cttccagccatgaacagtgtagttggtggaaagatggaaaagctag-caaaggagatcttgcatcagaga-taacgtgtactctgatatgaatcaagcaa 45553199  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||| || |||||||||||||||||||| |||||||| ||||||||||    
T  45553200 atctccttgaagcatgggcctgaagattacagatccactatcctctct 45553247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 19585582 - 19585826
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| |||||||||||| |  |||||||||||||||||||||||||||||||||||| || | |||||||||| || ||||||||    
T  19585582 ctattaggtttgattacattaaaagttaagtcataaaaatcaacctaaagtaagaacaaatggaacattctg-agattagaatgttcacttctgcacatg 19585680  T
Q  101 cttcca------acagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaaa 193  Q
    ||||||      | ||||||||||||||||||||| ||||||||| ||||| |||||||||  |||||| | |  | | | |||||  | ||||||||||    
T  19585681 cttccagccatgatagtgtagttggtggaaagatggaaaagctagcaaaaggagatcttgcatcagaga-taatgtgtactctgatgtgaatcaagcaaa 19585779  T
Q  194 tcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    ||| || |||||||| || ||||||||||||||||| ||||||||||    
T  19585780 tctccttgaagcatgagcatgaagattgcagatccactatcctctct 19585826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 10415512 - 10415750
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  ||||||||||||||| |  |||||| ||||||| ||||||| |||| |||||| |||||||||| |||||||||||||| || ||||||||    
T  10415512 ctattaggattgattacatcaaaatt--agtcttacaaatcatcctaaaggaagagcaaatgaaacattctgatggtcagaatgttcacttctgcacatg 10415609  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    |||||       ||||||||||| ||| |||||| ||||||| ||| ||||| |||||||||  |||||| | || | | | ||||  |  |||||||||    
T  10415610 cttccagctatgaacagtgtagtaggtagaaagaagaaaaaggtagcaaaaggagatcttgcatcagaga-taacatgtactctgaataaaatcaagcaa 10415708  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatc 234  Q
    |||| ||||||||||||||| |||||||||||||||||||||    
T  10415709 atctcctagaagcatgggcccgaagattgcagatccattatc 10415750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 12769937 - 12770029
Alignment:
Q  10 ttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatgcttc 104  Q
    ||||| ||||||||||  ||||||| ||||||| | ||| |||||||||||||||||||||| | ||||||||||||||| | ||||||||||||    
T  12769937 ttgataacatcaaaagc-aagtcttacaaatcatcttaa-gtaagaacaaatggaacattctaatggtcagaatgttcatctctgcacatgcttc 12770029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 12491336 - 12491374
Alignment:
Q  202 aagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  12491336 aagcatgggcctgaagattgcagatccactatcatctct 12491374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 12515150 - 12515188
Alignment:
Q  202 aagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||||||||||||||||||||| ||||| ||||||||||    
T  12515150 aagcatgggcctgaagattgcatatccactatcctctct 12515188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 112030 - 111785
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| || ||||||||    
T  112030 ctattaggtttgattacattaaaagttaagtcttacaaatcaacctaaagtaagaacaaatggaacattctg-agatcagaatgttcacttctgcacatg 111932  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    |||||       |||||||||||||||||||||||| ||||||||| ||||| |||||||||  |||||| | || | | | ||||   | |||||||||    
T  111931 cttccagccatgaacagtgtagttggtggaaagatggaaaagctagcaaaaggagatcttgcatcagaga-taacgtgtactctgagatgaatcaagcaa 111833  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||| || ||||||||||||||||||||||||||||| ||||||||||    
T  111832 atctccttgaagcatgggcctgaagattgcagatccactatcctctct 111785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 18210261 - 18210016
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| || ||||||||    
T  18210261 ctattaggtttgattacattaaaagttaagtcttacaaatcaacctaaagtaagaacaaatggaacattctg-agatcagaatgttcacttctgcacatg 18210163  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    |||||       |||||||||||||||||||||||| ||||||||| ||||| |||||||||  |||||| | || | | | ||||   | |||||||||    
T  18210162 cttccagccatgaacagtgtagttggtggaaagatggaaaagctagcaaaaggagatcttgcatcagaga-taacgtgtactctgagatgaatcaagcaa 18210064  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||| || ||||||||||||||||||||||||||||| ||||||||||    
T  18210063 atctccttgaagcatgggcctgaagattgcagatccactatcctctct 18210016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 18219599 - 18219354
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| || ||||||||    
T  18219599 ctattaggtttgattacattaaaagttaagtcttacaaatcaacctaaagtaagaacaaatggaacattctg-agatcagaatgttcacttctgcacatg 18219501  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    |||||       |||||||||||||||||||||||| ||||||||| ||||| |||||||||  |||||| | || | | | ||||   | |||||||||    
T  18219500 cttccagccatgaacagtgtagttggtggaaagatggaaaagctagcaaaaggagatcttgcatcagaga-taacgtgtactctgagatgaatcaagcaa 18219402  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||| || ||||||||||||||||||||||||||||| ||||||||||    
T  18219401 atctccttgaagcatgggcctgaagattgcagatccactatcctctct 18219354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 21681449 - 21681694
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| || ||||||||    
T  21681449 ctattaggtttgattacattaaaagttaagtcttacaaatcaacctaaagtaagaacaaatggaacattctg-agatcagaatgttcacttctgcacatg 21681547  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    |||||       |||| ||||||||||||||||||| ||||||||| ||||| |||||||||  |||||| | || | | | ||||   | |||||||||    
T  21681548 cttccagccatgaacaatgtagttggtggaaagatggaaaagctagcaaaaggagatcttgcatcagaga-taacgtgtactctgagatgaatcaagcaa 21681646  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||| || ||||||||||||||||||||||||||||| ||||||||||    
T  21681647 atctccttgaagcatgggcctgaagattgcagatccactatcctctct 21681694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 13 - 240
Target Start/End: Complemental strand, 34130927 - 34130694
Alignment:
Q  13 attacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatgcttcc------- 105  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||| || |||||||||||| || |||||||||||||           
T  34130927 attacattaaaagttaagtcttacaaatcaacctaaagtaagaagaaatggaacattctg-agatcagaatgttcacttctgcacatgcttccagccatg 34130829  T
Q  106 aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaaatcttctagaag 204  Q
    |||||||||||||||||||||||||||||||||| ||||| |||| ||||  |||||| | || | | | |||||  | ||||||||||||| || ||||    
T  34130828 aacagtgtagttggtggaaagatgaaaaagctagcaaaaggagatattgcatcagaga-taacgtgtactctgatatgaatcaagcaaatctccttgaag 34130730  T
Q  205 catgggcctgaagattgcagatccattatcctctct 240  Q
    ||||||||||||||||||||||||| ||||||||||    
T  34130729 catgggcctgaagattgcagatccactatcctctct 34130694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 4038429 - 4038184
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||  | ||||||||    
T  4038429 ctattaggtttgattacattaaaagttaagtcttacaaatcaacctaaagtaagaacaaatggaacattctg-agatcagaatgttcacgtctgcacatg 4038331  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    ||| |       |||||||||||||||||||||||| ||||| ||| ||||| |||||||||  |||||| | || | | | |||| ||  |||||||||    
T  4038330 ctttcagccatgaacagtgtagttggtggaaagatggaaaagttagcaaaaggagatcttgcatcagaga-taacgtgtactctgaacaaaatcaagcaa 4038232  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||| || ||||||||||||||||||||||||||||| ||||||||||    
T  4038231 atctccttgaagcatgggcctgaagattgcagatccactatcctctct 4038184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 19888803 - 19888559
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||| || |||||||||||| || ||||||||    
T  19888803 ctattaggtttgattacattaaaagttaagtcttacagatcaacctaaagtaagaacaaatggaacattctg-agatcagaatgttcacttctgcacatg 19888705  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    |||||       |||||||||||||||||||||||| |||||||||  |||| |||||||||  |||||| | || | | | |||||  | |||||||||    
T  19888704 cttccagccataaacagtgtagttggtggaaagatggaaaagctag-caaaggagatcttgcatcagaga-taacgtgtactctgatatgaatcaagcaa 19888607  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||| || ||||||||||||||||||||||||||||| ||||||||||    
T  19888606 atctccttgaagcatgggcctgaagattgcagatccactatcctctct 19888559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 42090966 - 42090721
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    ||||||||||||||||||| ||||||||||||||  ||||||| |||||||||||||||| | ||||||| |||||||||||||||||||| ||||||||    
T  42090966 ctattagagttgattacattaaaagttaagtcttaaaaatcaaactaaagtaagaacaaaagaaacattccgaaggtcagaatgttcatttctgcacatg 42090867  T
Q  101 cttc-------caacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    ||||        |||| ||||||||||||||||||||||||||||| ||||| |||||||||  |||||| | || | ||| |||||  | |||||||||    
T  42090866 cttctaaccatgaacaatgtagttggtggaaagatgaaaaagctagcaaaaggagatcttgcatcagaga-taacgtgtcctctgatttgaatcaagcaa 42090768  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    ||||  | |||||||||| ||||||| |||||||||| ||||||||||    
T  42090767 atctcattgaagcatgggactgaaga-tgcagatccactatcctctct 42090721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 10 - 240
Target Start/End: Complemental strand, 37299255 - 37299019
Alignment:
Q  10 ttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatgcttcc---- 105  Q
    |||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||| || |||||||||||| || |||||||||||||        
T  37299255 ttgattacattaaaagttaagtcttataaatcaacctaaagtaagaacaaatggaacattctg-agatcagaatgttcacttctgcacatgcttccagcc 37299157  T
Q  106 ---aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaaatcttctag 201  Q
       |||||||||||||||||||||||| |||| |||| ||||| |||||||||  |||||| | || | | | ||||   | ||||||||||||| || |    
T  37299156 atgaacagtgtagttggtggaaagatggaaaaactagcaaaaggagatcttgcatcagaga-taacgtgtactctgagatgaatcaagcaaatctccttg 37299058  T
Q  202 aagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  37299057 aagcatgggcctgaagattgcagatccactatcctctct 37299019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 31916618 - 31916861
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| || ||||||||    
T  31916618 ctattaggtttgattacattaaaagttaagtcttacaaatcaacctaaagtaagaacaaatggaacattctg-agatcagaatgttcacttatgcacatg 31916716  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    |||||       |||||||||||| ||||||||||| ||| ||||| ||||| |||||||||  |||||| | || | | |  ||||  | |||||||||    
T  31916717 cttccagccatgaacagtgtagttagtggaaagatggaaacgctagcaaaaggagatcttgcatcagaga-taacgtgtactttgatatgaatcaagcaa 31916815  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatcctct 238  Q
    |||| || ||||||||||||||||||||||||||||| ||||||||    
T  31916816 atctccttgaagcatgggcctgaagattgcagatccactatcctct 31916861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 37549054 - 37548810
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||| || |||||||||||| || ||||||||    
T  37549054 ctattaggtttgattacattaaaagttaagtcttataaatcaacctaaagtaagaacaaatggaacattctg-agatcagaatgttcacttctgcacatg 37548956  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    |||||       |||||||||||||||||||||||| ||||||||| ||||| |||||||||  || ||| | || | | | ||||   | |||||||||    
T  37548955 cttccagccatgaacagtgtagttggtggaaagatggaaaagctagcaaaag-agatcttgcatcaaaga-taacgtgtactctgagatgaatcaagcaa 37548858  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||| || ||||||||||||||||||||||||||||| ||||||||||    
T  37548857 atctccttgaagcatgggcctgaagattgcagatccactatcctctct 37548810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 37817406 - 37817651
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||| || |||||||||||| || ||||||||    
T  37817406 ctattaggtttgattacattaaaagttaagtctttcaaatcaacctaaagaaagaacaaatggaacattctg-agatcagaatgttcacttctgcacatg 37817504  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    |||||       |||||||||||||||| |||||| |||||||||| ||||| |||||||||  |||||| | || | | | ||||   | |||||||||    
T  37817505 cttccagccatgaacagtgtagttggtgaaaagatcaaaaagctagcaaaaggagatcttgcatcagaga-taacgtgtactctgagatgaatcaagcaa 37817603  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||| || |||||||||||||||||||||||||||||  |||||||||    
T  37817604 atctccttgaagcatgggcctgaagattgcagatccacgatcctctct 37817651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 27274630 - 27274386
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| || ||||||||    
T  27274630 ctattaggtttgattacattaaaagttaagtcttacaaatcaacctaaagtaagaacaaatggaacattctg-agatcagaatgttcacttctgcacatg 27274532  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    |||||       |||| ||||||||||||||||||| |||||||||  |||| |||||||||  |||||| | || | | | ||||   | |||||||||    
T  27274531 cttccagccatgaacaatgtagttggtggaaagatggaaaagctag-caaaggagatcttgcatcagaga-taacgtgtactctgagatgaatcaagcaa 27274434  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||| ||  |||||||||||||||||||||||||||| ||||||||||    
T  27274433 atctccttaaagcatgggcctgaagattgcagatccactatcctctct 27274386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 20764165 - 20764407
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    ||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||| | |||||| ||||||||| ||||||||||| |||| |||    
T  20764165 ctattagagttaattacattaaaagttaagtcttacaaatcaacctaaagtaagaacaaaagaaacattttgaaggtcaaaatgttcatttctgcatatg 20764264  T
Q  101 cttccaac----agtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaaatc 195  Q
    |||||| |    |  |||||||||||||||||||||||||||| ||||  | |||||||  |||||| | || | |||  || |  | ||||||||||||    
T  20764265 cttccagccatgaacgtagttggtggaaagatgaaaaagctagcaaaatgaaatcttgcatcagaga-taacgtgtcctttggtttgaatcaagcaaatc 20764363  T
Q  196 ttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    | || |||||||||||||||||| |||||||||| ||||||||||    
T  20764364 tacttgaagcatgggcctgaaga-tgcagatccactatcctctct 20764407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 13572129 - 13571885
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||    
T  13572129 ctattaggtttgattacattaaaagttaagtctttcaaatcaacctaaagtaagaacaaatggaacattctg-agatcagaatgttcatttctgcacatg 13572031  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    |||||       |||||||||||||||||||||||| ||||||||| ||| ||| |||||||  |||||| | || | | | ||||   | ||| |||||    
T  13572030 cttccagccatgaacagtgtagttggtggaaagatggaaaagctagcaaaggaa-atcttgcatcagaga-taacgtgtactctgagatgaatccagcaa 13571933  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
     ||| |   |||||||||||||||||||||||||||| ||||||||||    
T  13571932 ctctccgtaaagcatgggcctgaagattgcagatccactatcctctct 13571885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 22173699 - 22173455
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||| || |||||||||||| || ||||||||    
T  22173699 ctattaggtttgattacattaaaagttaagtcttataaatcaacctaaagtaagaacaaatggaacattctg-agatcagaatgttcacttctgcacatg 22173601  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    |||||       ||||||||||||||||||||| || |||||||||  |||| |||||||||  |||||| | || | | | ||||   | ||| | |||    
T  22173600 cttccagccatgaacagtgtagttggtggaaaggtggaaaagctag-caaaggagatcttgcatcagaga-taacgtgtactctgagatgaatccaacaa 22173503  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||| || ||||||||||||||||||||||||||||| ||||||||||    
T  22173502 atctccttgaagcatgggcctgaagattgcagatccactatcctctct 22173455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 30944235 - 30944075
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| ||||||||||||||  |||||||||||||||||||||||||| ||||||||| || |||||||||||| || ||||||||    
T  30944235 ctattaggtttgattacattaaaagttaagtcttataaatcaacctaaagtaagaacaaatgaaacattctg-agatcagaatgttcacttctgcacatg 30944137  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc 155  Q
    |||||       |||||||||||||||||||||||| ||||||||| ||||| |||||||||    
T  30944136 cttccagccatgaacagtgtagttggtggaaagatggaaaagctagcaaaaggagatcttgc 30944075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 30953657 - 30953497
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| ||||||||||||||  |||||||||||||||||||||||||| ||||||||| || |||||||||||| || ||||||||    
T  30953657 ctattaggtttgattacattaaaagttaagtcttataaatcaacctaaagtaagaacaaatgaaacattctg-agatcagaatgttcacttctgcacatg 30953559  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc 155  Q
    |||||       |||||||||||||||||||||||| ||||||||| ||||| |||||||||    
T  30953558 cttccagccatgaacagtgtagttggtggaaagatggaaaagctagcaaaaggagatcttgc 30953497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 37651852 - 37651693
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||| || |||||||||||| || ||||||||    
T  37651852 ctattaggtttgattacattaaaagttaagtcttataaatcaacctaaagtaagaacaaatggaacattctg-agatcagaatgttcacttctgcacatg 37651754  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc 155  Q
    |||||       |||||||||||||||||||||||| ||||||||| ||||| |||||||||    
T  37651753 cttccagccatgaacagtgtagttggtggaaagatggaaaagctagcaaaag-agatcttgc 37651693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 20896760 - 20896862
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  ||||||||||||||||| ||||||| |||||||  |||||||||||| ||| |||||||||||||||||||||||||||| | |||||| |    
T  20896760 ctattaggattgattacatcaaaagt-aagtcttacaaatcattctaaagtaagaaaaaaaggaacattctgaaggtcagaatgttcatctctgcacaag 20896858  T
Q  101 cttc 104  Q
    ||||    
T  20896859 cttc 20896862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 205925 - 205823
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||||||||  || ||||| ||||||| |||||||||||| |||||| |||||||||| ||||||||||||||| | ||||||||    
T  205925 ctattaggattgattacatcaaaaagta-gtcttacaaatcatcctaaagtaagagcaaatgaaacattctgatggtcagaatgttcatctctgcacatg 205827  T
Q  101 cttc 104  Q
    ||||    
T  205826 cttc 205823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 205736 - 205686
Alignment:
Q  184 atcaagcaaatcttctagaagcatgggcctgaagattgcagatccattatc 234  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  205736 atcaagcaaatctcctagaagcatgggcctgaagattgcagatccactatc 205686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 30944053 - 30944001
Alignment:
Q  188 agcaaatcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    ||||||||| || ||||||||||||||||||||||||||||| ||||||||||    
T  30944053 agcaaatctccttgaagcatgggcctgaagattgcagatccactatcctctct 30944001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 30953475 - 30953423
Alignment:
Q  188 agcaaatcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    ||||||||| || ||||||||||||||||||||||||||||| ||||||||||    
T  30953475 agcaaatctccttgaagcatgggcctgaagattgcagatccactatcctctct 30953423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 20904980 - 20904878
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  ||| ||||| ||||||| ||||||| |||||||  |||||||||||| ||| |||||||| |||||||||||||| | || | ||||||||    
T  20904980 ctattaggattggttacaacaaaagt-aagtcttacaaatcattctaaagtaagaaaaaaaggaacattatgaaggtcagaatggttatctctgcacatg 20904882  T
Q  101 cttc 104  Q
    ||||    
T  20904881 cttc 20904878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 240
Target Start/End: Complemental strand, 37648239 - 37648204
Alignment:
Q  205 catgggcctgaagattgcagatccattatcctctct 240  Q
    ||||||||||||||||||||||||| ||||||||||    
T  37648239 catgggcctgaagattgcagatccactatcctctct 37648204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 19828487 - 19828242
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| || ||||||||    
T  19828487 ctattaggtttgattacattaaaagttaagtctttcaaatcaacctaaagtaagaacaaatggaacattctg-agatcagaatgttcacttctgcacatg 19828389  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    |||||       ||||||||||||||||||||||| |||||||||| ||||| |||||||||  |||||| | || | | | ||||   | |||||||||    
T  19828388 cttccagccatgaacagtgtagttggtggaaagatcaaaaagctagcaaaaggagatcttgcatcagaga-taacgtgtactctgagatgaatcaagcaa 19828290  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||| || ||||||||||||||||||||||||||||| ||||||||||    
T  19828289 atctccttgaagcatgggcctgaagattgcagatccactatcctctct 19828242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 2489815 - 2489571
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| || ||||||||    
T  2489815 ctattaggtttgattacattaaaagttaagtcttacaaatcaacctaaagtaagaacaaatggaacattctg-agatcagaatgttcacttctgcacatg 2489717  T
Q  101 cttc-------caacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    ||||        |||||||||||||||||||||||| |||| |||| ||||| |||||||||  |||||| | || | | | |||| ||  |||||||||    
T  2489716 cttctagccatgaacagtgtagttggtggaaagatggaaaaactagcaaaaggagatcttgcatcagaga-taacatgtactctgaacaaaatcaagcaa 2489618  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||| || |||||||||||||||||| |||||||||| ||||||||||    
T  2489617 atctccttgaagcatgggcctgaaga-tgcagatccactatcctctct 2489571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 13120214 - 13119970
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||| || |||||||||||| || ||||||||    
T  13120214 ctattaggtttgattacattaaaagttaagtcttacagatcaacctaaagtaagaacaaatggaacattctg-agatcagaatgttcacttctgcacatg 13120116  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    |||||       ||| |||||||||||||||||||| ||||||||| ||||| |||||||||  |||||| | || | | | |||| ||  |||||||||    
T  13120115 cttccagccatgaacggtgtagttggtggaaagatggaaaagctagcaaaaggagatcttgcatcagaga-taacatgtactctgaacaaaatcaagcaa 13120017  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||| || |||||||||||||||||| |||||||||| ||||||||||    
T  13120016 atctccttgaagcatgggcctgaaga-tgcagatccactatcctctct 13119970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 20745319 - 20745075
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| || ||||||||    
T  20745319 ctattaggtttgattacattaaaagttaagtcttacaaatcaacctaaagtaagaacaaatggaacattctg-agatcagaatgttcacttctgcacatg 20745221  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    |||||       |||||| ||||||||||||||||| |||||||||  |||| |||||||||  |||||| | || | | | ||||   | |||||||||    
T  20745220 cttccagccatgaacagtatagttggtggaaagatggaaaagctag-caaaggagatcttgcatcagaga-taacgtgtactctgagatgaatcaagcaa 20745123  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||| || ||||||||||||||||||||||||||||| ||||||||||    
T  20745122 atctccttgaagcatgggcctgaagattgcagatccactatcctctct 20745075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 4783224 - 4782979
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||| || || |||||||||||| || ||||||||    
T  4783224 ctattaggtttgattacattaaaagttaagtcttataaatcaacctaaagtaagaacaaatggaacattatg-agatcagaatgttcacttctgcacatg 4783126  T
Q  101 cttcc-------aacagtgtagttggtggaaagat-gaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagca 191  Q
    |||||       ||||||||||||||||||||||| |||||||||||  |||| |||||||||  |||||| | || | | | ||||   | ||||||||    
T  4783125 cttccagccatgaacagtgtagttggtggaaagatggaaaaagctag-caaaggagatcttgcatcagaga-taacctgtactctgagatgaatcaagca 4783028  T
Q  192 aatcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    ||||| || ||||||||||||||||||||||||||||| ||||||||||    
T  4783027 aatctccttgaagcatgggcctgaagattgcagatccactatcctctct 4782979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 13113102 - 13112869
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| | ||||||||||||  | |||||||||||||||||||||||||||||||||| || |||||||||||| || ||||||||    
T  13113102 ctattaggtttgattacattagaagttaagtcttatagatcaacctaaagtaagaacaaatggaacattctg-agatcagaatgttcacttctgcacatg 13113004  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    |||||       |||| |||||||||||| |||||| ||||||||| ||||| |||||||||  |||||| | || | | | |||| ||  |||||||||    
T  13113003 cttccagccatgaacaatgtagttggtgggaagatggaaaagctagcaaaaggagatcttgcatcagaga-taacatgtactctgaacaaaatcaagcaa 13112905  T
Q  193 atcttctagaagcatgggcctgaagattgcagatcca 229  Q
    ||||||| |||||||||||||||||| ||||||||||    
T  13112904 atcttcttgaagcatgggcctgaaga-tgcagatcca 13112869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 12376359 - 12376603
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  ||||||||||||||||| ||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  12376359 ctattaggattgattacatcaaaagt-aagtcttacaaatcatcctaaagtaagaacaaaaggaacattctgaaggtcagaatgttcatctttgcacatg 12376457  T
Q  101 ctt-------ccaacagtgtagttggtggaaagatgaaaaagc-tagtaaaagaagatcttgcgcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    |||         ||||||||||||| || |||| | |  ||||  || ||||| ||||||||| |||||||  ||||  || |||||||| |||||  ||    
T  12376458 cttttaactatgaacagtgtagttgttgaaaag-ttagcaagcaaagcaaaaggagatcttgctcagagataaacttgccctctgatcagaatcaataaa 12376556  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    ||||  |||||||||||||||||||  |||||||||| ||||||||||    
T  12376557 atctcttagaagcatgggcctgaag-ctgcagatccactatcctctct 12376603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 18560793 - 18560926
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| || ||||||||    
T  18560793 ctattaggtttgattacattaaaagttaagtctttcaaatcaacctaaagtaagaacaaatggaacattctg-agatcagaatgttcacttctgcacatg 18560891  T
Q  101 cttcc-------aacagtgtagttggtggaaagat 128  Q
    |||||       |||||||||||||||||||||||    
T  18560892 cttccagccatgaacagtgtagttggtggaaagat 18560926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 10 - 155
Target Start/End: Complemental strand, 51979000 - 51978849
Alignment:
Q  10 ttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatgcttcc---- 105  Q
    |||||||||||||||||  |||||||||||||| |||||||||||| |||||| |||||||||| ||||||||| |||| |  |||||||| || |        
T  51979000 ttgattacatcaaaagt--agtcttgcaaatcatcctaaagtaagagcaaatgaaacattctgatggtcagaatattcactcatgcacatgttttccagc 51978903  T
Q  106 ----aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc 155  Q
        ||||||||||||||| |||||| ||||||  ||| ||||| |||||||||    
T  51978902 tatgaacagtgtagttggtagaaagaagaaaaatgtagcaaaaggagatcttgc 51978849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 106 - 240
Target Start/End: Original strand, 20292953 - 20293086
Alignment:
Q  106 aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgcg-cagagattgacttatcccctgatcagtatcaagcaaatcttctagaag 204  Q
    |||| ||||||||||||||||||||||||||||| |||||  ||||||||  |||||||  || | ||| || ||  | ||||||||||||| || ||||    
T  20292953 aacaatgtagttggtggaaagatgaaaaagctagcaaaaggggatcttgcatcagagata-acgtgtcctctaatttgaatcaagcaaatctccttgaag 20293051  T
Q  205 catgggcctgaagattgcagatccattatcctctct 240  Q
    |||||||||||||| |||||||||| ||||||||||    
T  20293052 catgggcctgaaga-tgcagatccactatcctctct 20293086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 20491937 - 20491985
Alignment:
Q  55 aacaaatggaacattctgaaggtcagaatgttcatttttgcacatgctt 103  Q
    |||| |||||||||||||| ||||||||||||||  | |||||||||||    
T  20491937 aacagatggaacattctgatggtcagaatgttcagctctgcacatgctt 20491985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 45190643 - 45190888
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| || ||||||||    
T  45190643 ctattaggtttgattacattaaaagttaagtcttacaaatcaacctaaagtaagaacaaatggaacattctg-agatcagaatgttcacttctgcacatg 45190741  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    |||||       |||||||||||||||||||||||| ||||||||| ||||| |||||||||  |||||| | || | | | ||||   | |||||||||    
T  45190742 cttccagccatgaacagtgtagttggtggaaagatggaaaagctagcaaaaggagatcttgcatcagaga-taacgtgtactctgagatgaatcaagcaa 45190840  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||| || ||||||||||||||||||||||||||||| ||||||||||    
T  45190841 atctccttgaagcatgggcctgaagattgcagatccactatcctctct 45190888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 12570392 - 12570638
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    ||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||  |||| |||||||||||||||||||||||||||| ||||||||    
T  12570392 ctattagagttgattacattaaaagttaagtcttacaaatcaacttaaagtaagaa-gaatgaaacattctgaaggtcagaatgttcatttctgcacatg 12570490  T
Q  101 cttcc---------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagc 190  Q
    |||||         |||||||||||||||||||||||||||||||||| |||||||||||||||  |||||| | || | | | |||||  | |||||||    
T  12570491 cttccagctatatgaacagtgtagttggtggaaagatgaaaaagctagcaaaagaagatcttgcatcagaga-taacgtgtactctgatttgaatcaagc 12570589  T
Q  191 aaatcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||||| || ||||||||| |||||||| |||||||||| ||||| ||||    
T  12570590 aaatctccttgaagcatggtcctgaaga-tgcagatccactatccactct 12570638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 574066 - 574310
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| || ||||||||    
T  574066 ctattaggtttgattacattaaaagttaagtcttacaaatcaacctaaagtaagaacaaatggaacattctg-agatcagaatgttcacttctgcacatg 574164  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    |||||       |||||||| ||||||||||||||| ||||| ||| ||||| |||||||||  |||||| | || | | | |||| ||  |||||||||    
T  574165 cttccagccatgaacagtgtggttggtggaaagatggaaaagttagcaaaaggagatcttgcatcagaga-taacgtgtactctgaacaaaatcaagcaa 574263  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||| || |||||||||||||||||| |||||||||| ||||||||||    
T  574264 atctccttgaagcatgggcctgaaga-tgcagatccactatcctctct 574310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 10 - 155
Target Start/End: Complemental strand, 22687912 - 22687760
Alignment:
Q  10 ttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatgcttcc---- 105  Q
    |||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||| ||||| |||||||||||| || |||||||||||||        
T  22687912 ttgattacattaaaagttaagtcttacaaataaacctaaagtaagaacaaatggaacattttgaagatcagaatgttcacttctgcacatgcttccagca 22687813  T
Q  106 ---aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc 155  Q
       |||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  22687812 atgaacagtgtagttggtggaaagatgaaaaagctagcaaaaggagatcttgc 22687760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 16934540 - 16934316
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| |||||||||||||| || ||||||||||||||||||||||| |||||||||| || |||||||||||| || || |||||    
T  16934540 ctattaggtttgattacattaaaagttaagtcttacagatcaacctaaagtaagaacaaattgaacattctg-agatcagaatgttcacttctgtacatg 16934442  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    |||||       |||||||||||||||||||||||| ||||||||| ||||| |||||||||  |||||| | || | | | |||| ||  |||||||||    
T  16934441 cttccagccatgaacagtgtagttggtggaaagatggaaaagctagcaaaaggagatcttgcatcagaga-taacatttactctgaacaaaatcaagcaa 16934343  T
Q  193 atcttctagaagcatgggcctgaagat 219  Q
    |||| || |||||||||||||||||||    
T  16934342 atctccttgaagcatgggcctgaagat 16934316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 17005200 - 17004976
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| |||||||||||||| || ||||||||||||||||||||||| |||||||||| || |||||||||||| || || |||||    
T  17005200 ctattaggtttgattacattaaaagttaagtcttacagatcaacctaaagtaagaacaaattgaacattctg-agatcagaatgttcacttctgtacatg 17005102  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    |||||       |||||||||||||||||||||||| ||||||||| ||||| |||||||||  |||||| | || | | | |||| ||  |||||||||    
T  17005101 cttccagccatgaacagtgtagttggtggaaagatggaaaagctagcaaaaggagatcttgcatcagaga-taacatttactctgaacaaaatcaagcaa 17005003  T
Q  193 atcttctagaagcatgggcctgaagat 219  Q
    |||| || |||||||||||||||||||    
T  17005002 atctccttgaagcatgggcctgaagat 17004976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 27 - 240
Target Start/End: Complemental strand, 37863245 - 37863027
Alignment:
Q  27 taagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatgcttcc-------aacagtgtagttgg 119  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| || |||||||||||||       ||||||||||||||    
T  37863245 taagtcttacaaatcaacctaaagtaagaacaaatggaacattctg-agatcagaatgttcacttctgcacatgcttccagccatgaacagtgtagttgg 37863147  T
Q  120 tggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaaatcttctagaagcatgggcctgaaga 218  Q
    |||||||||||||||||||| ||||  | |||||||   ||||| | || | | | |||||  | ||||||||||||| || |||||||| |||||||||    
T  37863146 tggaaagatgaaaaagctagcaaaatgaaatcttgcataagaga-taacgtgtactctgatatgaatcaagcaaatctccttgaagcatgagcctgaaga 37863048  T
Q  219 ttgcagatccattatcctctct 240  Q
     |||||||||| ||||||||||    
T  37863047 -tgcagatccactatcctctct 37863027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 10 - 234
Target Start/End: Complemental strand, 3606161 - 3605933
Alignment:
Q  10 ttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatgcttcc---- 105  Q
    |||||||||||||||||  |||||| ||||||| |||||||||||| |||||| |||||||||| |||||||||||||  || |||||||||||||        
T  3606161 ttgattacatcaaaagt--agtcttacaaatcatcctaaagtaagagcaaatgaaacattctgatggtcagaatgttctcttctgcacatgcttccagct 3606064  T
Q  106 ---aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaaatcttctag 201  Q
       ||||||||||||||| ||||||  |||||| ||| ||||| ||| |||||  |||||| | || | | | |||| ||  |||||||||||||||||     
T  3606063 atgaacagtgtagttggtagaaaga-aaaaaaggtagcaaaaggagaacttgcatcagaga-taacatgtactctgaacaaaatcaagcaaatcttctaa 3605966  T
Q  202 aagcatgggcctgaagattgcagatccattatc 234  Q
    |||||||||||||||||||||||||||| ||||    
T  3605965 aagcatgggcctgaagattgcagatccactatc 3605933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 24942733 - 24942794
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatg 62  Q
    |||||||  |||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  24942733 ctattaggtttgattacattaaaagttaagtcttacaaatcaacctaaagtaagaacaaatg 24942794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 24239243 - 24239168
Alignment:
Q  28 aagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatgcttc 104  Q
    ||||||| ||||||| ||||| || | ||||||||||||||||| | | ||||||||||||  ||||||||||||||    
T  24239243 aagtcttacaaatcatcctaa-gtgaaaacaaatggaacattctaatgatcagaatgttcagctttgcacatgcttc 24239168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 105; Significance: 1e-52; HSPs: 3)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 2 - 240
Target Start/End: Complemental strand, 114761 - 114518
Alignment:
Q  2 tattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatgc 101  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||| || |||||||||    
T  114761 tattagagttgattacattaaaagttaagtcttacaaatcaacctaaagtaagaacaaatggaacattct-aagatcagaatgttcacttctgcacatgc 114663  T
Q  102 ttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaaa 193  Q
    ||||       |||||||||||||||||||||||||||||||||| ||||| |||| ||||   ||||| | || | ||| |||||  | ||||| ||||    
T  114662 ttccagtcatgaacagtgtagttggtggaaagatgaaaaagctagcaaaaggagatattgcattagaga-taacgtgtcctctgatttgaatcaaacaaa 114564  T
Q  194 tcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    ||| || |||||||||||||||||| |||||||||| ||||||||||    
T  114563 tctccttgaagcatgggcctgaaga-tgcagatccactatcctctct 114518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 146499 - 146744
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||| || ||||||||    
T  146499 ctattaggtttgattacattaaaagttaagtcttacaaatcaacctaaagtaagaacaagtggaacattctgaagatcagaatgttcacttctgcacatg 146598  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    |||||       |||||||||||||||||||||||||||||||||| ||||| |||||||||  |||||| | |||| | | || ||    || ||||||    
T  146599 cttccagccatgaacagtgtagttggtggaaagatgaaaaagctagcaaaaggagatcttgcatcagaga-taacttgttctcttattttaattaagcaa 146697  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||| || |||||||||||||||||| |||||||||| ||||||||||    
T  146698 atctccttgaagcatgggcctgaaga-tgcagatccactatcctctct 146744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 153764 - 153627
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| |||||||||||||| ||||| |||||||||||| |||||||||||||||||| |||| |||||||||| || ||||||||    
T  153764 ctattaggtttgattacattaaaagttaagtcttacaaatgaacctaaagtaataacaaatggaacattctg-aggttagaatgttcacttctgcacatg 153666  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaa 132  Q
    |||||       || ||||||||||||||||||||||||    
T  153665 cttccagcgatgaatagtgtagttggtggaaagatgaaa 153627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 1105 - 860
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||| ||| |||||||||||| || ||||||||    
T  1105 ctattaggtttgattacattaaaagttaagtcttacaaatcaacctaaagtaagaacaaatggaatattct-aagatcagaatgttcacttctgcacatg 1007  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    |||||       |||||||||||||||||||||||| ||||||||| ||||| |||||||||  |||||| | |  | | | |||||  | |||||||||    
T  1006 cttccagccatgaacagtgtagttggtggaaagatggaaaagctagcaaaaggagatcttgcatcagaga-taaagtgtactctgatatgaatcaagcaa 908  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||| |  ||||||||||||||||||||||||||||| ||||||||||    
T  907 atctccatgaagcatgggcctgaagattgcagatccactatcctctct 860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 18567 - 18812
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||| || ||||||||    
T  18567 ctattaggtttgattacattaaaagttaagtcttacaaatcaacctaaagtaagaacagatggaacattctgaagatcagaatgttcacttctgcacatg 18666  T
Q  101 cttc-------caacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    ||||        |||||||||||||||||||||||||||||||||| ||||| |||||||||  |||||| | |  | ||| |||||    |||||||||    
T  18667 cttctagccatgaacagtgtagttggtggaaagatgaaaaagctagcaaaaggagatcttgcatcagaga-taatgtgtcctctgatttaaatcaagcaa 18765  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||| || |||||||||||||||||| ||||||| || ||||||||||    
T  18766 atctccttgaagcatgggcctgaaga-tgcagattcactatcctctct 18812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1705 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold1705
Description:

Target: scaffold1705; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 679 - 924
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||| || |||||||||||| || | ||||||    
T  679 ctattaggtttgattacattaaaagttaagtcttacaaatcaacctaaagtaggaacaaatggaacattctg-agatcagaatgttcacttctacacatg 777  T
Q  101 cttcc-------aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaa 192  Q
    |||||       |||||||||||||||||||||||| ||||| ||| ||||| |||||||||  |||||| | || | | | |||| ||  |||||||||    
T  778 cttccagccatgaacagtgtagttggtggaaagatggaaaagatagcaaaaggagatcttgcatcagaga-taacgtgtactctgaacaaaatcaagcaa 876  T
Q  193 atcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||| || ||||||||||| |||||||| |||||||| ||||||||||    
T  877 atctccttgaagcatgggcttgaagattacagatccactatcctctct 924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 10 - 139
Target Start/End: Complemental strand, 24059 - 23924
Alignment:
Q  10 ttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatgcttcc---- 105  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||| || |||||||||||||        
T  24059 ttgattacattaaaagttaagtcttacaaatcaacctaaagtaagaacaaatggaacattctg-agatcagaatgttcacttctgcacatgcttccagcc 23961  T
Q  106 ---aacagtgtagttggtggaaagatgaaaaagctag 139  Q
       |||||||||||||||||||||||| |||||||||    
T  23960 atgaacagtgtagttggtggaaagatggaaaagctag 23924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 29358 - 29302
Alignment:
Q  184 atcaagcaaatcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||||| |||||| || ||||||||||||||||||||||||||||| ||||||||||    
T  29358 atcaagaaaatctccttgaagcatgggcctgaagattgcagatccactatcctctct 29302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 41331 - 41283
Alignment:
Q  57 caaatggaacattctgaaggtcagaatgttcatttttgcacatgcttcca 106  Q
    ||||||||||||||||| | |||||||||||| || ||||||||||||||    
T  41331 caaatggaacattctga-gatcagaatgttcacttctgcacatgcttcca 41283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 59840 - 59978
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  ||||||||||||||||| ||||||| ||||||| |||||||||||||||||  |||||||||||||||||||||||| || |  |||||||    
T  59840 ctattaggattgattacatcaaaagt-aagtcttacaaatcatcctaaagtaagaacaaaatgaacattctgaaggtcagaatgttgatctccgcacatg 59938  T
Q  101 cttc-------caacagtgtagttggtggaaagatgaaaa 133  Q
    ||||       ||||| |||||||||||||||||| ||||    
T  59939 cttctaactatcaacaatgtagttggtggaaagataaaaa 59978  T

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Target: scaffold0018; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 54460 - 54598
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  ||||||||||||||||| ||||||| ||||||| |||||||||||||||||  ||||||||| |||||||||||||| || |  |||||||    
T  54460 ctattaggattgattacatcaaaagt-aagtcttacaaatcatcctaaagtaagaacaaaatgaacattctaaaggtcagaatgttgatctccgcacatg 54558  T
Q  101 cttc-------caacagtgtagttggtggaaagatgaaaa 133  Q
    ||||       ||||| |||||||||||||||||| ||||    
T  54559 cttctaactatcaacaatgtagttggtggaaagataaaaa 54598  T

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Target: scaffold0018; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 58412 - 58550
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  ||||||||||||||||| ||||||| ||||||| |||||||||||||||||  ||||||||| |||||||||||||| || |  |||||||    
T  58412 ctattaggattgattacatcaaaagt-aagtcttacaaatcatcctaaagtaagaacaaaatgaacattctaaaggtcagaatgttgatctccgcacatg 58510  T
Q  101 cttc-------caacagtgtagttggtggaaagatgaaaa 133  Q
    ||||       ||||| |||||||||||||||||| ||||    
T  58511 cttctaactatcaacaatgtagttggtggaaagataaaaa 58550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0706 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: scaffold0706
Description:

Target: scaffold0706; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 58 - 240
Target Start/End: Complemental strand, 2165 - 1977
Alignment:
Q  58 aaatggaacattctgaaggtcagaatgttcatttttgcacatgcttcca-------acagtgtagttggtggaaagatgaaaaagctagtaaaagaagat 150  Q
    |||||||||||||||| | |||||||||||| || ||||||||||||||       ||||||||||||||||||||||  |||| |||| ||||| ||||    
T  2165 aaatggaacattctga-gatcagaatgttcacttctgcacatgcttccagccatgaacagtgtagttggtggaaagatttaaaatctagcaaaaggagat 2067  T
Q  151 cttgcg-cagagattgacttatcccctgatcagtatcaagcaaatcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    |||||  |||||||  || | | | |||||  | ||| ||||||||| || ||||||||||||||||||||||||||||| ||||||||||    
T  2066 cttgcatcagagata-acgtgtactctgatatgaatctagcaaatctccttgaagcatgggcctgaagattgcagatccactatcctctct 1977  T

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Target: scaffold0706; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 4165 - 4104
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatg 62  Q
    |||||||  |||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  4165 ctattaggtttgattacattaaaagttaagtcttacaaatcaacctaaagtaagaacaaatg 4104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0706; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 4378 - 4317
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatg 62  Q
    |||||||  |||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  4378 ctattaggtttgattacattaaaagttaagtcttacaaatcaacctaaagtaagaacaaatg 4317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 11123 - 11225
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  ||||||||| ||||||| ||||||| ||||||| ||||||||||||| ||| |||||||||||||||| ||||||||||| | ||||||||    
T  11123 ctattaggattgattacaacaaaagt-aagtcttacaaatcatcctaaagtaagaaaaaaaggaacattctgaaggttagaatgttcatctctgcacatg 11221  T
Q  101 cttc 104  Q
    ||||    
T  11222 cttc 11225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 11304 - 11367
Alignment:
Q  176 tgatcagtatcaagcaaatcttctagaagcatgggcctgaagattgcagatccattatcctctct 240  Q
    ||||||| |||||| |||||| ||| ||||||||||||||||| ||||| |||| ||| ||||||    
T  11304 tgatcagaatcaagaaaatctcctataagcatgggcctgaaga-tgcaggtccactattctctct 11367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1468 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold1468
Description:

Target: scaffold1468; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 240
Target Start/End: Original strand, 1144 - 1378
Alignment:
Q  10 ttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatgcttcc---- 105  Q
    |||||||||||||||||  |||||| |||||||  ||||||||||| |||||| |||||||||| |||||||||||||| |  ||||||| |||||        
T  1144 ttgattacatcaaaagt--agtcttacaaatcattctaaagtaagatcaaatgaaacattctgatggtcagaatgttcactcctgcacatccttccagct 1241  T
Q  106 ---aacagtgtagttggtggaaagatgaaaaagctagtaaaagaagatcttgc-gcagagattgacttatcccctgatcagtatcaagcaaatcttctag 201  Q
       |||| |||||||| | |||||| ||||||| ||| ||||| ||||||| |  |||||| | |||| | | |||| ||  ||| ||||||||| ||||    
T  1242 atgaacaatgtagttgatagaaagaagaaaaaggtagcaaaaggagatcttacatcagaga-taacttgtactctgaacaaaatctagcaaatctcctag 1340  T
Q  202 aagcatgggcctgaagattgcagatccattatcctctct 240  Q
    ||||||||| |||||| ||||||| ||| ||||||||||    
T  1341 aagcatgggtctgaag-ttgcagacccactatcctctct 1378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 15212 - 15313
Alignment:
Q  1 ctattagagttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttcatttttgcacatg 100  Q
    |||||||  |||||||||||||||   ||||||| |||||||  |||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  15212 ctattaggattgattacatcaaaaac-aagtcttacaaatcattctaa-gtaagaacaaatggaacattctgatggtcagaatgttcatctttgcacatg 15309  T
Q  101 cttc 104  Q
    ||||    
T  15310 cttc 15313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 88
Target Start/End: Original strand, 15689 - 15764
Alignment:
Q  10 ttgattacatcaaaagttaagtcttgcaaatcaacctaaagtaagaacaaatggaacattctgaaggtcagaatgttca 88  Q
    |||||||||||||| | || ||||| ||||||| ||||| || | ||||||||||||||||||| ||||||||||||||    
T  15689 ttgattacatcaaatggta-gtcttacaaatcatcctaa-gtga-aacaaatggaacattctgatggtcagaatgttca 15764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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