View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9608_low_4 (Length: 385)

Name: NF9608_low_4
Description: NF9608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9608_low_4
NF9608_low_4
[»] chr2 (4 HSPs)
chr2 (82-383)||(36910941-36911248)
chr2 (15-78)||(36911278-36911341)
chr2 (15-72)||(10862990-10863047)
chr2 (15-63)||(9792256-9792304)
[»] chr3 (4 HSPs)
chr3 (15-72)||(27065296-27065353)
chr3 (25-72)||(30991654-30991701)
chr3 (25-72)||(93416-93463)
chr3 (25-80)||(27079878-27079934)
[»] chr5 (4 HSPs)
chr5 (25-80)||(39058076-39058132)
chr5 (25-72)||(14148947-14148994)
chr5 (25-72)||(18014437-18014484)
chr5 (15-72)||(26637605-26637662)
[»] chr8 (4 HSPs)
chr8 (25-72)||(3469214-3469261)
chr8 (30-72)||(42906859-42906901)
chr8 (19-64)||(34347447-34347492)
chr8 (25-72)||(30805978-30806025)
[»] chr4 (5 HSPs)
chr4 (25-72)||(15478212-15478259)
chr4 (25-72)||(24831085-24831132)
chr4 (25-71)||(23996409-23996455)
chr4 (15-72)||(13385756-13385813)
chr4 (15-71)||(40491804-40491860)
[»] chr1 (6 HSPs)
chr1 (25-72)||(27055720-27055767)
chr1 (25-72)||(35760457-35760504)
chr1 (25-72)||(46835213-46835260)
chr1 (25-69)||(46435418-46435462)
chr1 (25-72)||(3979689-3979736)
chr1 (18-67)||(26213955-26214004)
[»] scaffold0002 (1 HSPs)
scaffold0002 (15-72)||(452904-452961)
[»] chr7 (2 HSPs)
chr7 (25-72)||(2658563-2658610)
chr7 (15-72)||(9158792-9158849)
[»] scaffold0538 (2 HSPs)
scaffold0538 (15-80)||(8500-8566)
scaffold0538 (15-72)||(4035-4092)
[»] chr6 (3 HSPs)
chr6 (30-72)||(24081675-24081717)
chr6 (15-72)||(33483551-33483608)
chr6 (33-80)||(18053620-18053668)
[»] scaffold0193 (1 HSPs)
scaffold0193 (25-70)||(22897-22942)


Alignment Details
Target: chr2 (Bit Score: 170; Significance: 4e-91; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 82 - 383
Target Start/End: Complemental strand, 36911248 - 36910941
Alignment:
Q  82 tttgcaggatacacaatttattcctgggattaactttcctaggaacataaaagtggaaaccttattaccgggaaaatataa------gtgtttggtcaat 175  Q
    ||||||||||| |||||||||| |||||||||||||||  ||||||||||||||||||||||||||||  | ||||||||       |||||||||||||    
T  36911248 tttgcaggatatacaatttatttctgggattaactttcggaggaacataaaagtggaaaccttattacaagaaaaatatagaaaaaggtgtttggtcaat 36911149  T
Q  176 aatttaattcttgggaatannnnnnnnnnnnnnnnncatagaatagctaaaatatgtttggtttgcaatgtatattctttggattgaacattgtaattat 275  Q
    |||||||||||||||||||                 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36911148 aatttaattcttgggaatattttttaatttttttttcatataatagctaaaatatgtttggtttgcaatgtatattctttggattgaacattgtaattat 36911049  T
Q  276 caaaatacccctgatgtctatccggtgaaactttcaatatataaaagtgtacgactctattttccattaccttcaagatttacaaaacatgctcatgatg 375  Q
    |||||||||||| |||||||| ||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||      
T  36911048 caaaatacccctaatgtctattcggtgaaaccttcaaaatataaaagtgtacgactctattttacattaccttcaagatttacaaaacatgctcatgaaa 36910949  T
Q  376 atgtccat 383  Q
    ||||||||    
T  36910948 atgtccat 36910941  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 36911341 - 36911278
Alignment:
Q  15 gaggtgagtataaagaatttaataaaatttataaaaataagtgtatataatcaagtggtgtaag 78  Q
    ||||||||| |||| ||||| ||||||||||||||||| |||||||||||||||||| ||||||    
T  36911341 gaggtgagtgtaaaaaatttgataaaatttataaaaatgagtgtatataatcaagtgctgtaag 36911278  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 10862990 - 10863047
Alignment:
Q  15 gaggtgagtataaagaatttaataaaatttataaaaataagtgtatataatcaagtgg 72  Q
    ||||||||| |||| ||||| ||||||||||||||||| |||||| ||||||||||||    
T  10862990 gaggtgagtgtaaacaatttgataaaatttataaaaatgagtgtacataatcaagtgg 10863047  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 9792256 - 9792304
Alignment:
Q  15 gaggtgagtataaagaatttaataaaatttataaaaataagtgtatata 63  Q
    |||||| || |||| ||||| ||||||||||||||||| ||||||||||    
T  9792256 gaggtgggtgtaaacaatttgataaaatttataaaaatgagtgtatata 9792304  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 27065353 - 27065296
Alignment:
Q  15 gaggtgagtataaagaatttaataaaatttataaaaataagtgtatataatcaagtgg 72  Q
    ||||||||| |||| ||||| ||||||||||||||||| |||||||||||||||||||    
T  27065353 gaggtgagtgtaaacaatttgataaaatttataaaaatgagtgtatataatcaagtgg 27065296  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 30991701 - 30991654
Alignment:
Q  25 taaagaatttaataaaatttataaaaataagtgtatataatcaagtgg 72  Q
    |||| ||||| ||||||||||||||||| |||||||||||||||||||    
T  30991701 taaacaatttgataaaatttataaaaatgagtgtatataatcaagtgg 30991654  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 93463 - 93416
Alignment:
Q  25 taaagaatttaataaaatttataaaaataagtgtatataatcaagtgg 72  Q
    |||| ||||| ||||||||||||||||| |||||| ||||||||||||    
T  93463 taaataatttgataaaatttataaaaatgagtgtagataatcaagtgg 93416  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 27079934 - 27079878
Alignment:
Q  25 taaagaatttaataaaatttataaaaataagtgtatataatcaagt-ggtgtaagtt 80  Q
    |||| ||||| |||||| ||||||||||||||||| ||||| |||| ||||||||||    
T  27079934 taaacaatttgataaaacttataaaaataagtgtaaataattaagtgggtgtaagtt 27079878  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 39058076 - 39058132
Alignment:
Q  25 taaagaatttaataaaatttataaaaataagtgtatataatcaagt-ggtgtaagtt 80  Q
    |||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||    
T  39058076 taaacaatttgataaaatttataaaaatgagtgtatataatcaagtgggtgtaagtt 39058132  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 14148994 - 14148947
Alignment:
Q  25 taaagaatttaataaaatttataaaaataagtgtatataatcaagtgg 72  Q
    |||| ||||| ||||||||||||||||| |||||||||||||||||||    
T  14148994 taaacaatttgataaaatttataaaaatgagtgtatataatcaagtgg 14148947  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 18014437 - 18014484
Alignment:
Q  25 taaagaatttaataaaatttataaaaataagtgtatataatcaagtgg 72  Q
    |||| ||||| ||||||||||||||||||| |||||||||||||||||    
T  18014437 taaacaatttgataaaatttataaaaataaatgtatataatcaagtgg 18014484  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 26637605 - 26637662
Alignment:
Q  15 gaggtgagtataaagaatttaataaaatttataaaaataagtgtatataatcaagtgg 72  Q
    ||||||||| |||| |||||  |||||||||||||||| ||| || ||||||||||||    
T  26637605 gaggtgagtgtaaacaatttgttaaaatttataaaaatgagtataaataatcaagtgg 26637662  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 3469214 - 3469261
Alignment:
Q  25 taaagaatttaataaaatttataaaaataagtgtatataatcaagtgg 72  Q
    |||| ||||| ||||||||||||||||| |||||||||||||||||||    
T  3469214 taaacaatttgataaaatttataaaaatgagtgtatataatcaagtgg 3469261  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 42906901 - 42906859
Alignment:
Q  30 aatttaataaaatttataaaaataagtgtatataatcaagtgg 72  Q
    ||||| ||||||||||||||||| |||||||||||||||||||    
T  42906901 aatttgataaaatttataaaaatgagtgtatataatcaagtgg 42906859  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 34347492 - 34347447
Alignment:
Q  19 tgagtataaagaatttaataaaatttataaaaataagtgtatataa 64  Q
    ||||| |||| ||||| |||||||||||||||||||||||||||||    
T  34347492 tgagtttaaacaatttgataaaatttataaaaataagtgtatataa 34347447  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 30806025 - 30805978
Alignment:
Q  25 taaagaatttaataaaatttataaaaataagtgtatataatcaagtgg 72  Q
    |||| ||||| ||||||||||||||||| |||||| ||||||||||||    
T  30806025 taaataatttgataaaatttataaaaatgagtgtaaataatcaagtgg 30805978  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 15478212 - 15478259
Alignment:
Q  25 taaagaatttaataaaatttataaaaataagtgtatataatcaagtgg 72  Q
    |||||||||| ||||||||||||||||| |||||| ||||||||||||    
T  15478212 taaagaattttataaaatttataaaaatgagtgtacataatcaagtgg 15478259  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 24831085 - 24831132
Alignment:
Q  25 taaagaatttaataaaatttataaaaataagtgtatataatcaagtgg 72  Q
    |||| |||||||| |||||||||||||| |||||||||||||||||||    
T  24831085 taaacaatttaatcaaatttataaaaatgagtgtatataatcaagtgg 24831132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 23996455 - 23996409
Alignment:
Q  25 taaagaatttaataaaatttataaaaataagtgtatataatcaagtg 71  Q
    |||| ||||| ||||||||||||||||| ||||||||||||||||||    
T  23996455 taaacaatttgataaaatttataaaaatgagtgtatataatcaagtg 23996409  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 13385813 - 13385756
Alignment:
Q  15 gaggtgagtataaagaatttaataaaatttataaaaataagtgtatataatcaagtgg 72  Q
    ||||||||| |||| ||||| |||||| ||||||| || |||||| ||||||||||||    
T  13385813 gaggtgagtgtaaacaatttgataaaacttataaacatgagtgtaaataatcaagtgg 13385756  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 40491804 - 40491860
Alignment:
Q  15 gaggtgagtataaagaatttaataaaatttataaaaataagtgtatataatcaagtg 71  Q
    ||||||||| |||| |||||||| ||||||||||||||  || || |||||||||||    
T  40491804 gaggtgagtgtaaacaatttaattaaatttataaaaatgtgtataaataatcaagtg 40491860  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 27055767 - 27055720
Alignment:
Q  25 taaagaatttaataaaatttataaaaataagtgtatataatcaagtgg 72  Q
    |||| ||||| ||||||||||||||||| |||||||||||||||||||    
T  27055767 taaacaatttgataaaatttataaaaatgagtgtatataatcaagtgg 27055720  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 35760457 - 35760504
Alignment:
Q  25 taaagaatttaataaaatttataaaaataagtgtatataatcaagtgg 72  Q
    |||| ||||| ||||||||||||||||| |||||||||||||||||||    
T  35760457 taaacaatttgataaaatttataaaaatgagtgtatataatcaagtgg 35760504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 46835213 - 46835260
Alignment:
Q  25 taaagaatttaataaaatttataaaaataagtgtatataatcaagtgg 72  Q
    |||| ||||| ||||||||||||||||| |||||||||||||||||||    
T  46835213 taaacaatttgataaaatttataaaaatgagtgtatataatcaagtgg 46835260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 46435418 - 46435462
Alignment:
Q  25 taaagaatttaataaaatttataaaaataagtgtatataatcaag 69  Q
    |||| ||||| ||||||||||||||||| ||||||||||||||||    
T  46435418 taaacaatttgataaaatttataaaaatgagtgtatataatcaag 46435462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 3979736 - 3979689
Alignment:
Q  25 taaagaatttaataaaatttataaaaataagtgtatataatcaagtgg 72  Q
    |||| ||||| ||||||||||||||||| ||||||||||| |||||||    
T  3979736 taaacaatttgataaaatttataaaaatgagtgtatataaccaagtgg 3979689  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 26214004 - 26213955
Alignment:
Q  18 gtgagtataaagaatttaataaaatttataaaaataagtgtatataatca 67  Q
    |||||| |||| ||||| |||||| ||||||||||||||||| |||||||    
T  26214004 gtgagtgtaaacaatttgataaaaattataaaaataagtgtaaataatca 26213955  T

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Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 452904 - 452961
Alignment:
Q  15 gaggtgagtataaagaatttaataaaatttataaaaataagtgtatataatcaagtgg 72  Q
    |||||| || |||| ||||| ||||||||||||||||| ||| |||||||||||||||    
T  452904 gaggtgggtgtaaacaatttgataaaatttataaaaatgagtttatataatcaagtgg 452961  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 2658563 - 2658610
Alignment:
Q  25 taaagaatttaataaaatttataaaaataagtgtatataatcaagtgg 72  Q
    |||| ||||| ||||||||||| ||||| |||||||||||||||||||    
T  2658563 taaacaatttgataaaatttattaaaatgagtgtatataatcaagtgg 2658610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 9158792 - 9158849
Alignment:
Q  15 gaggtgagtataaagaatttaataaaatttataaaaataagtgtatataatcaagtgg 72  Q
    ||||||||| |||  ||||| |||||| ||||||||||  ||||||||||||||||||    
T  9158792 gaggtgagtgtaagcaatttgataaaagttataaaaatgggtgtatataatcaagtgg 9158849  T

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Target: scaffold0538 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0538
Description:

Target: scaffold0538; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 8500 - 8566
Alignment:
Q  15 gaggtgagtataaagaatttaataaaatttataaaaataagtgtatataatcaagt-ggtgtaagtt 80  Q
    ||||||||| |||| ||||| |||||| ||||||| || |||||| |||||||||| ||||||||||    
T  8500 gaggtgagtgtaaacaatttgataaaacttataaacatgagtgtaaataatcaagtgggtgtaagtt 8566  T

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Target: scaffold0538; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 4035 - 4092
Alignment:
Q  15 gaggtgagtataaagaatttaataaaatttataaaaataagtgtatataatcaagtgg 72  Q
    ||||||||| |||| ||||| |||||| ||||||| || |||||| ||||||||||||    
T  4035 gaggtgagtgtaaacaatttgataaaacttataaacatgagtgtaaataatcaagtgg 4092  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 24081717 - 24081675
Alignment:
Q  30 aatttaataaaatttataaaaataagtgtatataatcaagtgg 72  Q
    ||||| |||||||| |||||||| |||||||||||||||||||    
T  24081717 aatttgataaaattgataaaaatgagtgtatataatcaagtgg 24081675  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 33483551 - 33483608
Alignment:
Q  15 gaggtgagtataaagaatttaataaaatttataaaaataagtgtatataatcaagtgg 72  Q
    |||||| || |||| ||||| ||||||||||||||| | |||||||||||| ||||||    
T  33483551 gaggtgggtgtaaacaatttgataaaatttataaaatttagtgtatataatgaagtgg 33483608  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 18053620 - 18053668
Alignment:
Q  33 ttaataaaatttataaaaataagtgtatataatcaagtgg-tgtaagtt 80  Q
    ||||||| |||||||||||| |||||| |||||||||||| ||||||||    
T  18053620 ttaataatatttataaaaatgagtgtaaataatcaagtggatgtaagtt 18053668  T

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Target: scaffold0193 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 22942 - 22897
Alignment:
Q  25 taaagaatttaataaaatttataaaaataagtgtatataatcaagt 70  Q
    |||| ||||| ||||||||||||||||| | |||||||||||||||    
T  22942 taaacaatttgataaaatttataaaaatgattgtatataatcaagt 22897  T

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