View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9608_low_6 (Length: 362)
Name: NF9608_low_6
Description: NF9608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9608_low_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 15 - 362
Target Start/End: Complemental strand, 51383595 - 51383248
Alignment:
| Q |
15 |
atcaagcacctccaaattaaatcccaattgttcagcttttgccttagcattttttacttcctctatctcaatacttcttatctcagcatccatttcttca |
114 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51383595 |
atcaagcacctccaaattaaatcccaattgttcagcttttgacttagcatttttcacttcctctatctcaatacttcttatctcagcatccatttcttca |
51383496 |
T |
|
| Q |
115 |
agtttcttctccccattttcatatggctcactctttgaacaagttcctcccttatcccaaccaccttcaaaatgagatggtgaaaatgttctcacaatca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51383495 |
agtttcttctccccattttcatatggctcactctttgaacaagttcctcccttatcccaaccaccttcaaaatgagatggtgaaaatgttctcacaatca |
51383396 |
T |
|
| Q |
215 |
cataatttccattccctttaacaactttcctttcaattatactattaagagtagtccttaaagcctttctcatcggaacataaattccaatatcggtata |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
51383395 |
cataatttccattccctttaacaactttcctttcaattatactattaagagtagtccttaaagcctttctcatcgcaacataaattccaatatcggtata |
51383296 |
T |
|
| Q |
315 |
gttaaatttaagatcatgacatttaaaacaacctataatagactcacc |
362 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51383295 |
gttaaatttaagatcatgacatttaaaacaacctataatagactcacc |
51383248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 186; Significance: 1e-100; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 15 - 352
Target Start/End: Complemental strand, 15284410 - 15284073
Alignment:
| Q |
15 |
atcaagcacctccaaattaaatcccaattgttcagcttttgccttagcattttttacttcctctatctcaatacttcttatctcagcatccatttcttca |
114 |
Q |
| |
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|||||||||||| ||||| ||||| ||||||| |||||||||| ||||||||| |||||||||||||||| ||||||||||| |||||||||| ||||| |
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| T |
15284410 |
atcaagcacctctaaatttaatccaaattgtttagcttttgccctagcattttccacttcctctatctcaacacttcttatcttagcatccattccttca |
15284311 |
T |
|
| Q |
115 |
agtttcttctccccattttcatatggctcactctttgaacaagttcctcccttatcccaaccaccttcaaaatgagatggtgaaaatgttctcacaatca |
214 |
Q |
| |
|
|||||||||||| ||||| |||||||||| |||||||||||||| || |||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
15284310 |
agtttcttctcctcatttccatatggctctctctttgaacaagtaccacccttatcccaaccaccttcaaaatgagtaggtgagtatgttctcacaatca |
15284211 |
T |
|
| Q |
215 |
cataatttccattccctttaacaactttcctttcaattatactattaagagtagtccttaaagcctttctcatcggaacataaattccaatatcggtata |
314 |
Q |
| |
|
||| | || |||||||||||| | |||||| |||||||| |||||||| ||||||||||||||||||||||| |||| ||||| ||||||||| |||| |
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| T |
15284210 |
catcaattttattccctttaaccattttcctctcaattatgctattaagggtagtccttaaagcctttctcattggaatataaaatccaatatcactata |
15284111 |
T |
|
| Q |
315 |
gttaaatttaagatcatgacatttaaaacaacctataa |
352 |
Q |
| |
|
|||||||||| || |||||| ||||||||||||||| |
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|
| T |
15284110 |
attaaatttaaattcttgacatctaaaacaacctataa |
15284073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 48 - 298
Target Start/End: Original strand, 15287541 - 15287791
Alignment:
| Q |
48 |
agcttttgccttagcattttttacttcctctatctcaatacttcttatctcagcatccatttcttcaagtttcttctccccattttcatatggctcactc |
147 |
Q |
| |
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|||||||| ||| ||| ||| ||||| ||||||||||| ||||| |||||| |||||||| || ||| | |||||||| | ||| ||| |||| | || |
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| T |
15287541 |
agcttttgtcttggcactttccacttcttctatctcaatccttctaatctcaccatccattcctccaactatcttctcctcttttctataaggcttagtc |
15287640 |
T |
|
| Q |
148 |
tttgaacaagttcctcccttatcccaaccaccttcaaaatgagatggtgaaaatgttctcacaatcacataatttccattccctttaacaactttccttt |
247 |
Q |
| |
|
||||||||||| || ||||||||||| ||||||||||||||| |||||||||||| | |||||||||| ||| ||| |||||| |||||||||| | |
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| T |
15287641 |
tttgaacaagtaccagccttatcccaatcaccttcaaaatgagcaggtgaaaatgttttaacaatcacatctattctatttcctttagcaactttcctct |
15287740 |
T |
|
| Q |
248 |
caattatactattaagagtagtccttaaagcctttctcatcggaacataaa |
298 |
Q |
| |
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|||||||||||||||| |||||||| ||||||||||| | |||||||||| |
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|
| T |
15287741 |
caattatactattaagggtagtcctcaaagcctttcttaatggaacataaa |
15287791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 57 - 284
Target Start/End: Complemental strand, 15262876 - 15262649
Alignment:
| Q |
57 |
cttagcattttttacttcctctatctcaatacttcttatctcagcatccatttcttcaagtttcttctccccattttcatatggctcactctttgaacaa |
156 |
Q |
| |
|
||||||||||| ||||| || |||||||| ||||| |||||| ||||||| | ||| ||||||||| || ||| |||| || ||| |||||||||| |
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| T |
15262876 |
cttagcattttccacttcttcaatctcaatccttctaatctcactttccatttttccaattttcttctcaccctttacataaggttcaatctttgaacat |
15262777 |
T |
|
| Q |
157 |
gttcctcccttatcccaaccaccttcaaaatgagatggtgaaaatgttctcacaatcacataatttccattccctttaacaactttcctttcaattatac |
256 |
Q |
| |
|
||||| ||||||||||| |||| ||||||||||| |||||||| ||| ||||||| || | ||||||||| |||| |||||||||| |||||||| | |
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| T |
15262776 |
gttccagccttatcccaatcaccatcaaaatgagaaggtgaaaaagttttcacaattactccaattccattccttttagcaactttcctctcaattatgc |
15262677 |
T |
|
| Q |
257 |
tattaagagtagtccttaaagcctttct |
284 |
Q |
| |
|
||||||| |||||||||||||||||| |
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| T |
15262676 |
cattaagacaagtccttaaagcctttct |
15262649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 70 - 284
Target Start/End: Original strand, 15265417 - 15265631
Alignment:
| Q |
70 |
acttcctctatctcaatacttcttatctcagcatccatttcttcaagtttcttctccccattttcatatggctcactctttgaacaagttcctcccttat |
169 |
Q |
| |
|
||||| ||||||||||| |||| |||||| |||||||| |||||| ||||||||| |||||| ||| |||| | | |||| ||||| || |||||| |
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|
| T |
15265417 |
acttcttctatctcaatctttctcatctcaccatccattccttcaactttcttctctccatttctataaggcttagtttttggacaagcaccagccttat |
15265516 |
T |
|
| Q |
170 |
cccaaccaccttcaaaatgagatggtgaaaatgttctcacaatcacataatttccattccctttaacaactttcctttcaattatactattaagagtagt |
269 |
Q |
| |
|
||||| |||||||||||||| ||| | ||||||| | ||||| |||| | || |||| |||||| || | || |||||||| |||||||| ||||| |
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|
| T |
15265517 |
cccaagcaccttcaaaatgatgtggcgtaaatgttgtaacaattacattaatttcattacctttatttcctcttctatcaattatgctattaagggtagt |
15265616 |
T |
|
| Q |
270 |
ccttaaagcctttct |
284 |
Q |
| |
|
||||||||||||||| |
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|
| T |
15265617 |
ccttaaagcctttct |
15265631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 286
Target Start/End: Original strand, 15256924 - 15257108
Alignment:
| Q |
102 |
atccatttcttcaagtttcttctccccattttcatatggctcactctttgaacaagttcctcccttatcccaaccaccttcaaaatgagatggtgaaaat |
201 |
Q |
| |
|
||||||| ||||||||| |||||||| | || ||| |||| | |||||| ||||| || | |||||||| ||||||||||||||| |||||||||| |
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| T |
15256924 |
atccattccttcaagttccttctccctacttctataaggcttagtctttggacaagcaccagctttatcccattcaccttcaaaatgagctggtgaaaat |
15257023 |
T |
|
| Q |
202 |
gttctcacaatcacataatttccattccctttaacaactttcctttcaattatactattaagagtagtccttaaagcctttctca |
286 |
Q |
| |
|
||| | || | |||| | || | | |||||| || |||| ||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
15257024 |
gttgtaactagtacatcaattttactacctttatttcctctcctatcaattatactattaagagtagttcttaaagcctttctca |
15257108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 183; Significance: 6e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 15 - 353
Target Start/End: Original strand, 44248150 - 44248488
Alignment:
| Q |
15 |
atcaagcacctccaaattaaatcccaattgttcagcttttgccttagcattttttacttcctctatctcaatacttcttatctcagcatccatttcttca |
114 |
Q |
| |
|
|||||||||||||||||| ||||| | ||||| ||||||| | |||||||||| ||||||||||||||||||||||||||| |||||||||| ||||| |
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|
| T |
44248150 |
atcaagcacctccaaatttaatccaatttgttgagcttttactttagcattttcagcttcctctatctcaatacttcttatcttagcatccattccttca |
44248249 |
T |
|
| Q |
115 |
agtttcttctccccattttcatatggctcactctttgaacaagttcctcccttatcccaaccaccttcaaaatgagatggtgaaaatgttctcacaatca |
214 |
Q |
| |
|
|||||||||||| |||| | ||||||||||||||||||||| || || |||||||||||| ||||||||||||||| ||||| ||||||||||||| | |
|
|
| T |
44248250 |
agtttcttctcctcattcttatatggctcactctttgaacatgtaccacccttatcccaatcaccttcaaaatgagtaggtgagtatgttctcacaatta |
44248349 |
T |
|
| Q |
215 |
cataatttccattccctttaacaactttcctttcaattatactattaagagtagtccttaaagcctttctcatcggaacataaattccaatatcggtata |
314 |
Q |
| |
|
||| | ||||||||||| | |||| |||| | |||||||| |||||||| ||||||||||||||||||||||| |||||||||| ||||||||| ||||| |
|
|
| T |
44248350 |
catcaattccattccctcttacaattttcttctcaattatgctattaagggtagtccttaaagcctttctcattggaacataaaatccaatatcagtata |
44248449 |
T |
|
| Q |
315 |
gttaaatttaagatcatgacatttaaaacaacctataat |
353 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
44248450 |
attaaatttaaattcatgacatctaaaacaacctataat |
44248488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 146; Significance: 8e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 15 - 352
Target Start/End: Original strand, 11807068 - 11807405
Alignment:
| Q |
15 |
atcaagcacctccaaattaaatcccaattgttcagcttttgccttagcattttttacttcctctatctcaatacttcttatctcagcatccatttcttca |
114 |
Q |
| |
|
||||||||||| |||||| ||||| | ||||| || |||| |||||||||||| ||||||||||||| ||||||||||||| ||| |||||| ||||| |
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|
| T |
11807068 |
atcaagcaccttcaaatttaatccaacttgtttagatttttccttagcattttcagcttcctctatctccatacttcttatcttagcttccattccttca |
11807167 |
T |
|
| Q |
115 |
agtttcttctccccattttcatatggctcactctttgaacaagttcctcccttatcccaaccaccttcaaaatgagatggtgaaaatgttctcacaatca |
214 |
Q |
| |
|
|||||||||||| ||| || |||||| | ||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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|
| T |
11807168 |
agtttcttctcctcatatttatatggatttttctttgaacaagtacctcccttatcccaagaaccttcaaaatgagtaggtgaaaatgttctcacaatca |
11807267 |
T |
|
| Q |
215 |
cataatttccattccctttaacaactttcctttcaattatactattaagagtagtccttaaagcctttctcatcggaacataaattccaatatcggtata |
314 |
Q |
| |
|
||| | || ||||||||||||| | |||||| |||||||| ||||||| | | ||||||||||||||||||| |||||||||| ||||||||| |||| |
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|
| T |
11807268 |
catcaatttcattccctttaaccattttcctctcaattatggtattaagggcaatccttaaagcctttctcattggaacataaaatccaatatcattata |
11807367 |
T |
|
| Q |
315 |
gttaaatttaagatcatgacatttaaaacaacctataa |
352 |
Q |
| |
|
|| |||| | |||||||||| || |||||||||||| |
|
|
| T |
11807368 |
tttcgattttaaatcatgacatatagaacaacctataa |
11807405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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