View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9608_low_7 (Length: 354)
Name: NF9608_low_7
Description: NF9608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9608_low_7 |
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| [»] scaffold0320 (1 HSPs) |
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| [»] scaffold0167 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 26227418 - 26227693
Alignment:
| Q |
1 |
atgttatgtgaattaaaaagtggaagtagggctaacaaattacctcccaaaaattacaggccaacaaattgcacctaaaaatgtcattttcgactagaaa |
100 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
26227418 |
atgttacgtgaattaaaaagtggaagtagagctaacaaattacctcccaaaaattataggccaacaaattgctcctaaaaatgtcattttcgactagaaa |
26227517 |
T |
|
| Q |
101 |
aaatatgaagacgaaaattggaaattttgaaaatacttcatgtattcttaggagaatgacgtcatgctaatcattactttcaaaaatagtcttttcaatt |
200 |
Q |
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|||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
26227518 |
aaatatgaagacaaaaattggcatttttgaaaatacttcatgtattcttaggagaatgacgtcatgctaatcattattttcaaaaatggtcttttcaatt |
26227617 |
T |
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| Q |
201 |
ttccctttaccgtacaactttcaagatatagtgggccaccactttcctgttaaaaatttagtggggtcttttcatt |
276 |
Q |
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| T |
26227618 |
tcccctttactatacaactttcaagatatagtgggccaccacttttcagttacaaatttagtggagtcttttcatt |
26227693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 295 - 354
Target Start/End: Original strand, 26227689 - 26227748
Alignment:
| Q |
295 |
tcatttgttaacccttcatcttcctctccttcgtgcttccccattcctcatcattatagt |
354 |
Q |
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| T |
26227689 |
tcatttgttaacccttcatcttcctctccttcgtgcatccccattcctcatcattatagt |
26227748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 353
Target Start/End: Original strand, 7474416 - 7474551
Alignment:
| Q |
220 |
ttcaagatatagtgggccaccactttcctgtt-aaaaatttagtggggtcttttcattg--ccctaggacaccaaatgtcatttgttaacccttcatctt |
316 |
Q |
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| T |
7474416 |
ttcaagatttagtgggccaccacttggcagttgaaaaagttagtggggtctttccattttccccgagg-cacgaagtgtcatttgttaacccttcatctt |
7474514 |
T |
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| Q |
317 |
cctctccttcgtgcttccccattcctcatcattatag |
353 |
Q |
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| | |||||| |||||||||| ||||||| |||| |
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| T |
7474515 |
cattaccttcgcatttccccattcatcatcatcatag |
7474551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 119 - 297
Target Start/End: Complemental strand, 28760223 - 28760046
Alignment:
| Q |
119 |
tggaaattttgaaaatacttcatgtattcttaggagaatgacgtcatgctaatcattactttcaaaaatagtcttttcaattttccctttaccgtacaac |
218 |
Q |
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||||| |||||||||||| | ||||| || | |||| ||||| ||||| | | ||||||| ||| |||||||||||||||| | | |||| | ||||| |
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| T |
28760223 |
tggaatttttgaaaatacattatgtactccttggaggatgacatcatgtttctaattacttccaagaatagtcttttcaattcttcttttattgcacaac |
28760124 |
T |
|
| Q |
219 |
tttcaagatatagtgggccaccactttcctgttaaaaatttagtggggtcttttcattgccctaggacaccaaatgtca |
297 |
Q |
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| T |
28760123 |
tt-caagatttagtgggccgccactttgcagttgaaaagttagtggggtctttccattgccctagggcaccaagtgtca |
28760046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 50 - 326
Target Start/End: Complemental strand, 36498305 - 36498030
Alignment:
| Q |
50 |
aaaattacaggccaacaaattgcacctaaaaatgtcatttt-cgactagaaaaaatatgaagacgaaaattggaaattttgaaaatacttcatgtattct |
148 |
Q |
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|||||| || || |||||||||| || |||||||||||||| ||||| ||||| || |||| |||||||| | |||| |||| ||| | ||||||| |
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| T |
36498305 |
aaaattgcacgctaacaaattgcccccaaaaatgtcatttttcgacttgaaaacat--gaaggagaaaattgacattttttaaaa-actctaagtattct |
36498209 |
T |
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| Q |
149 |
taggagaatgacgtcatgctaatcattactttcaaaaatagtcttttcaattttccctttaccgtacaactttcaaga-tatagtgggccaccactttcc |
247 |
Q |
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| |||| |||| ||||||||| ||||||||||| ||| |||||||||||||| | || | | ||||||| ||||| | ||||||||||||| ||| |
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| T |
36498208 |
ttcgagacggacgccatgctaattattactttcaagaatggtcttttcaatttttctttcaatgcacaactt-caagaatttagtgggccaccaatttgt |
36498110 |
T |
|
| Q |
248 |
tgttaaaaatttagtggggtcttttca-ttgccctaggacaccaaatgtcatttgttaacccttcatcttcctctccttc |
326 |
Q |
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||| |||| |||| ||||||||| || |||||||| | |||||| ||||| |||||||| |||||||||| ||||||| |
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| T |
36498109 |
agttgaaaagttagcggggtctttccatttgccctaaggcaccaagtgtcacttgttaactcttcatcttcacctccttc |
36498030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0320 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0320
Description:
Target: scaffold0320; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 271
Target Start/End: Original strand, 6973 - 7086
Alignment:
| Q |
157 |
tgacgtcatgctaatcattactttcaaaaatagtcttttcaattttccctttaccgtacaactttcaagatatagtgggccaccactttcctgttaaaaa |
256 |
Q |
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|
||||||||||||||| ||| ||||||| | | |||||||||| ||||| ||| | | ||| |||||||||| ||| ||||||||||||| | ||| |||| |
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| T |
6973 |
tgacgtcatgctaattattgctttcaagagtggtcttttcaactttccttttgctgcaca-ctttcaagatttagcgggccaccactttgcagttgaaaa |
7071 |
T |
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| Q |
257 |
tttagtggggtcttt |
271 |
Q |
| |
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|||||||||| |||| |
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| T |
7072 |
tttagtggggccttt |
7086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0167 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0167
Description:
Target: scaffold0167; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 271
Target Start/End: Complemental strand, 9811 - 9698
Alignment:
| Q |
157 |
tgacgtcatgctaatcattactttcaaaaatagtcttttcaattttccctttaccgtacaactttcaagatatagtgggccaccactttcctgttaaaaa |
256 |
Q |
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|
||||||||||||||| ||| ||||||| | | |||||||||| ||||| ||| | | ||| |||||||||| ||| ||||||||||||| | ||| |||| |
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| T |
9811 |
tgacgtcatgctaattattgctttcaagagtggtcttttcaactttccttttgctgcaca-ctttcaagatttagcgggccaccactttgcagttgaaaa |
9713 |
T |
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| Q |
257 |
tttagtggggtcttt |
271 |
Q |
| |
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|||||||||| |||| |
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| T |
9712 |
tttagtggggccttt |
9698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 94
Target Start/End: Complemental strand, 15926865 - 15926822
Alignment:
| Q |
51 |
aaattacaggccaacaaattgcacctaaaaatgtcattttcgac |
94 |
Q |
| |
|
|||||||||||||||||| ||| || |||||||||||||||||| |
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|
| T |
15926865 |
aaattacaggccaacaaaatgcccccaaaaatgtcattttcgac |
15926822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 197
Target Start/End: Complemental strand, 19709124 - 19708983
Alignment:
| Q |
51 |
aaattacaggccaacaaattgcacctaaaaa-tgtcattttcgactagaaaaaatatgaagacgaaaattggaaattttgaaaatacttcatgtattctt |
149 |
Q |
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||||||| ||| |||||||||| || ||||| || |||||| ||||| ||||||||||| |||| |||| | ||||||||| ||| ||||||| || |
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| T |
19709124 |
aaattactggctaacaaattgcccccaaaaaatgccatttttgacta---aaaatatgaaggagaaagttggcatttttgaaaacact--atgtattttt |
19709030 |
T |
|
| Q |
150 |
aggagaatgacgtcatgctaatcattactttcaaaaatagtcttttca |
197 |
Q |
| |
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|||| ||||||||||| |||| ||||||||||| | || |||||||| |
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|
| T |
19709029 |
-ggaggatgacgtcatgataattattactttcaagagtattcttttca |
19708983 |
T |
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