View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9609_high_1 (Length: 900)
Name: NF9609_high_1
Description: NF9609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9609_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 773; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 773; E-Value: 0
Query Start/End: Original strand, 12 - 883
Target Start/End: Complemental strand, 1600090 - 1599192
Alignment:
| Q |
12 |
attattctccatagttgcattactaaataatcagttgaagattgaaatgcaacttt----------------acaagacattggatgagatggtgaggtg |
95 |
Q |
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| T |
1600090 |
attattctccatagttgcattactaaataatcagttgaagattgaaatgcaactttggtaaattacaactttacaagacattggatgagatggtgaggtg |
1599991 |
T |
|
| Q |
96 |
atgctagtcatattcctgcagtctcagaatggaagcctgatttcttcttctgctggagggtgtgatttggttctcttaaattttctgaagcctttttcgt |
195 |
Q |
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| T |
1599990 |
aggctagtcatattcctgcagtctcagaatggaagcctgatttcttcttctgctggagggtgtgatttggttctcttaaattttctgaagcctttttcgt |
1599891 |
T |
|
| Q |
196 |
ttcgttacttaaa-taacgttttcaatagtaaaatagtagtagtctttgttgaagtaaggtgttttgttatgtgaaagttgttaacttgttatgcaagat |
294 |
Q |
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||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1599890 |
ttctttacttaaaataacgttttcaatagtaaaatagtagtagtctttgttgaagtaaggtgttttgttatgtgaaagttgttaacttgttatgcaagat |
1599791 |
T |
|
| Q |
295 |
acctattgaatcctttcttgacttgaattatatatgaaggtagcttaagagtacaaaataaaaataaacaagatttagttttcattgaattggcacacga |
394 |
Q |
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| T |
1599790 |
acctattgaatactttcttgacttcaattatatatgaaggtagcttaagagtacaaaataaaaataaacaagatttagttttcattgaattggcacacga |
1599691 |
T |
|
| Q |
395 |
tatattgtttactaacaaagatttttagttaaaattgaaggaatgtaagattgtgggtttgataacattttagagggattctgattg-----ggacttta |
489 |
Q |
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| T |
1599690 |
tatattgtttactaacaaagatttttagttaaaattgaaggaatgtaagattgtgggtttgataacattttagagggattctgattgggacgggacttta |
1599591 |
T |
|
| Q |
490 |
gagctttaaaacatgtctagaattccttaacttccatataccatggtttgttaaaaaacggcaatattaatgaatcattgaaattcaaacaaaatatata |
589 |
Q |
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| T |
1599590 |
gagctttaaaacatgtctaaaattccttaacttccatataccatggtttgttaaaaaacggcaatattaatgaatcattgaaattcaaacaaaatatata |
1599491 |
T |
|
| Q |
590 |
tctagttatgtgtaaggttctaagtcaaattttggaccagaacctcataattacaataataacttcactccacaagtgagagtagaacaaatta--atat |
687 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1599490 |
tctagttatgtgtaaggttctaagtcaaattttggaccagaacctcataattacaataataacttcactccacaagtgagagtagaacaaattaatatat |
1599391 |
T |
|
| Q |
688 |
aaccacaaggaaagtgtagataatgtataataaatatttcttgttgtattgatgatttccacttgcattggagatttccacaagaaaagtacagttcggt |
787 |
Q |
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| T |
1599390 |
aaccacaaggaaagtgtagataatgtataataaatatttcttgttgtattgatgatttccacttgcattggagatttccacaagaaaagtacagttcggt |
1599291 |
T |
|
| Q |
788 |
tttggaaaa---gataattcctattcgatttgaaaccacagaacctacattcaaccttcatatcaattcggttcagagcaaacggttaacggttcagtt |
883 |
Q |
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| T |
1599290 |
tttggaaaagatgataattcctattcgatttgaaaccacagaacctacattcaaccttcatatcaattcggttcagagcaaacggttaacggttcagtt |
1599192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 166
Target Start/End: Original strand, 5769010 - 5769071
Alignment:
| Q |
105 |
atattcctgcagtctcagaatggaagcctgatttcttcttctgctggagggtgtgatttggt |
166 |
Q |
| |
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||||| ||| ||||| ||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
5769010 |
atatttctggagtctaggaatggatacctgatttcttcttctgctggaaggtgtgatttggt |
5769071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 772 - 833
Target Start/End: Original strand, 41222373 - 41222434
Alignment:
| Q |
772 |
aaaagtacagttcggttttggaaaagataattcctattcgatttgaaaccacagaacctaca |
833 |
Q |
| |
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||||||||| || || ||| ||||| ||| |||||||||| |||||||||||| |||||||| |
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| T |
41222373 |
aaaagtacaatttgggttttgaaaatatagttcctattcggtttgaaaccacataacctaca |
41222434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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