View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9609_high_3 (Length: 484)
Name: NF9609_high_3
Description: NF9609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9609_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 92 - 472
Target Start/End: Complemental strand, 4470334 - 4469954
Alignment:
| Q |
92 |
cgacgtcgtaatgttaccgatcaacagacacactatcatcatcgctttttctcaattgttacttttgtttttgaaataaattaaaaccattctcattgtt |
191 |
Q |
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| T |
4470334 |
cgacgtcgtaatgttaccgatcaacagacacactatcatcatcgctttttctcaattgttacttttgtttttgaaataaattaaaaccattctcattgtt |
4470235 |
T |
|
| Q |
192 |
gctttcaaataatcacaaatttcacaaattctcactcacaccattttcataatgcgatcattaatactaacgccgcgaaccatgccggaaaccaccgttg |
291 |
Q |
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| T |
4470234 |
gctttcaaataatcacaaatttcacaaattctcactcacaccattttcataatgcgatcattaatactaacgccgcgaaccatgccggaaaccaccgttg |
4470135 |
T |
|
| Q |
292 |
atttccgtgcaccgccgccatcaccggtagcctccggtcgtagatcaacggtaacaaacaacgaatttctcacggagtttctggaaacttcactccgagt |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4470134 |
atttccgtgcaccgccgccatcaccggtagcctccggtcgtagatcaacggtaacaaacaacgaatttctcacggagtttctggaaacttcactccgagt |
4470035 |
T |
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| Q |
392 |
tccagatctagtattaccggacaagattttcccgaaacagatcaatgacgaaacgccgccaaaagtagatttcgttgctct |
472 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4470034 |
tccagatctagtattaccggacaagattttcccgaaacagatcaatgacgaaacgccgccaaaagtagatttcgttgctct |
4469954 |
T |
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