View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9609_high_6 (Length: 362)
Name: NF9609_high_6
Description: NF9609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9609_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 16 - 353
Target Start/End: Original strand, 2466609 - 2466946
Alignment:
| Q |
16 |
caaaacatatcattcattttcacatcctcaacacctccttctttctccatctctttctcagtccttttctcactcccaaaataaggatgtataagtataa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2466609 |
caaaacatatcattcattttcacatcctcaacacctccttcttcctccatctctttctcagtccttttctcactcccaaaataaggatgtataagcataa |
2466708 |
T |
|
| Q |
116 |
cccctttaatcttcacaggacaaaacccatcattttgaatagctttaacagcaacataatgagaaatgttaccaccagcactatcaccagagagaaaaac |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2466709 |
cccctttaatcttcacaggacaaaacccatcattttgaatagctttaacagcaacataatgagaaatgttaccaccagcactatcaccagagagaaaaac |
2466808 |
T |
|
| Q |
216 |
atttgataaatcagcatgtcgtagaaacggttcggttttcacattttcaccaagccattcaagtgatgagtaacaatcttcataagctattggaagacga |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2466809 |
atttgataaatcagcatgtcgtagaaacggttcggttttcacattttcaccaagccattcaagtgatgagtaacaatcttcataagctattggaagacga |
2466908 |
T |
|
| Q |
316 |
tgctccggtgctaaccggtaatcaacagagagaataat |
353 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2466909 |
ttctccggtgctaaccggtaatcaacagagagaataat |
2466946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University