View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9609_high_7 (Length: 356)
Name: NF9609_high_7
Description: NF9609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9609_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 2129776 - 2129437
Alignment:
| Q |
1 |
ttgcctatattctgtaagtcggggtataaaccacagccaaaattgcagtcaaagtaaactttacactcaatttgcctgattattataaatttctgtattt |
100 |
Q |
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| T |
2129776 |
ttgcctatattctgtaagtcggggtataaaccacaaccaaaattgcagtcaaagtaaactttacactcaatttgccagattattataaatttctgtattt |
2129677 |
T |
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| Q |
101 |
tgggtataattttgtagaagtggtatcaaagcaactttgaggaaagacttaaactatatcatatgttcatttagctaaaattaaattggaagtcacagca |
200 |
Q |
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| T |
2129676 |
tgggtataattttgtagaagtggtatcaaagcaactttgaggaaagacttaaactatatcagatgttcatttagctaaaattaaattggaagtcacagca |
2129577 |
T |
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| Q |
201 |
gagaagctatcacaagatgttgaattgaataatacatgtatatgccaatgtcttataattcagcgttgaatggaaaaatgagnnnnnnncagccaaaagt |
300 |
Q |
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| T |
2129576 |
gagaagctatcacaagatgttgaattgaataatacatg--tatgccaatgtcttataattcagcgttgaatggaaaaatgagaaaaaaacagccaaaagt |
2129479 |
T |
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| Q |
301 |
aaatccaaaggtgagaagtaagatttagatctaggagtataa |
342 |
Q |
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| T |
2129478 |
aaatccaaaggtgagaagtaagatttagttctaggagtataa |
2129437 |
T |
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