View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9609_low_10 (Length: 411)
Name: NF9609_low_10
Description: NF9609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9609_low_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 19 - 403
Target Start/End: Original strand, 14176798 - 14177182
Alignment:
| Q |
19 |
aaacatccattcctccatgtcttgctcaaatacctaaaagtaaagctctaacctttgcacttgaagaagctgagttaataatgtattcagcaataaaaga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14176798 |
aaacatccattcctccatgtcttgctcaaatacctaaaagtaaagctctaacctttgcacttgaagaagctgagttaataatgtattcagcaataaaaga |
14176897 |
T |
|
| Q |
119 |
ccttttacaaaaaaccaaaatcaacccaaaatccattgacattgtaataactattagtagcatcttctgtcctacaccatctcttagttccatggtggtt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14176898 |
ccttttacaaaaaaccaaaatcaacccaaaatccattgacattgtaattactattagtagcatcttctgtcctacaccatctcttagttccatggtggtt |
14176997 |
T |
|
| Q |
219 |
aacaaattcaagatgagaagcaacatcatgagctttcatctatcaggtatgggatgcagtgctggaattatagctgttggtcttgcaaaagacttgttga |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14176998 |
aacaaattcaagatgagaagcaacatcatgagctttcatctatcaggtatgggatgcagtgctggaattatagctgttggtcttgcaaaagacttgttga |
14177097 |
T |
|
| Q |
319 |
gagttcatagaaactcattggctttaatagtaagcacagagacacttagtttaaattggtacacaggtaaagttccatctctgct |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14177098 |
gagttcatagaaactcattggctttaatagtaagcacagagacacttagtttaaattggtacacaggtaaagttccatctatgct |
14177182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University