View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9609_low_11 (Length: 378)
Name: NF9609_low_11
Description: NF9609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9609_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 8860551 - 8860199
Alignment:
| Q |
1 |
tgtccatgctagctagaaatattgaacttgaatgatgaagaaaccaatcctaatgggtgtagggtctctattaacatgtcttttgcttttatattttgtc |
100 |
Q |
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| T |
8860551 |
tgtccatgctagctagaaatattgaacttgaatgatgaagaaaccaatcctaatgggtgtagggcctctattaacatgtcttttgcttttatattttgtc |
8860452 |
T |
|
| Q |
101 |
tctgtgtgtgatgtgtttttaacaatatatttggtgggttaggaagtgtctgtgaaaatataggtgaatgtgggggaaagaaagagtgggaaggtt-ggt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
8860451 |
tctgtgtgtgatgtgtttttaacaatatatttggtgggttag-------------aaatataggtgaatgtgggggaaggaaagagtgggaaggtttggt |
8860365 |
T |
|
| Q |
200 |
cagagatgcgaatcgtgaggtatgcagatcattgacagagatagtcccttagacttagactatactactcatcagatttttacatatggttttcacaaac |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8860364 |
cagagatgcgaatcgtgaggtatgcagatcattgacagagatagtcccttagacttagactatactactcatcagatttttacatatggttttcacaaac |
8860265 |
T |
|
| Q |
300 |
ctatggtcgcaattttatgttctattcctagcttagcaatatcatcaaacctcatatgtatgtagt |
365 |
Q |
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|||||||||||| ||| ||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
8860264 |
ctatggtcgcaactttgtgttctattcctagcttagcaatatcatcaaacctcacatatatgtagt |
8860199 |
T |
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