View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9609_low_20 (Length: 331)

Name: NF9609_low_20
Description: NF9609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9609_low_20
NF9609_low_20
[»] chr6 (7 HSPs)
chr6 (67-236)||(13539792-13539966)
chr6 (31-69)||(8409194-8409232)
chr6 (31-66)||(1346918-1346953)
chr6 (31-66)||(1354901-1354936)
chr6 (31-72)||(1941803-1941844)
chr6 (31-64)||(3815223-3815256)
chr6 (31-68)||(9161075-9161112)
[»] chr7 (16 HSPs)
chr7 (31-66)||(22699116-22699151)
chr7 (31-65)||(5180303-5180337)
chr7 (31-69)||(48735267-48735305)
chr7 (31-68)||(42495981-42496018)
chr7 (31-67)||(2541166-2541202)
chr7 (31-67)||(32758214-32758250)
chr7 (31-66)||(21172153-21172188)
chr7 (31-70)||(34626353-34626392)
chr7 (31-66)||(42798623-42798658)
chr7 (31-66)||(43557426-43557461)
chr7 (31-66)||(46354148-46354183)
chr7 (31-66)||(47077999-47078034)
chr7 (31-65)||(18326989-18327023)
chr7 (31-68)||(35334960-35334997)
chr7 (31-68)||(42805476-42805513)
chr7 (30-66)||(2663076-2663112)
[»] chr4 (15 HSPs)
chr4 (31-66)||(20405047-20405082)
chr4 (31-66)||(55766612-55766647)
chr4 (31-66)||(55830867-55830902)
chr4 (31-68)||(48598969-48599006)
chr4 (31-67)||(5648212-5648248)
chr4 (31-67)||(6430771-6430807)
chr4 (31-67)||(20224937-20224973)
chr4 (31-67)||(30639333-30639369)
chr4 (31-66)||(10660358-10660393)
chr4 (31-66)||(10874503-10874538)
chr4 (31-66)||(23501747-23501782)
chr4 (35-68)||(5306813-5306846)
chr4 (31-67)||(14590790-14590826)
chr4 (31-63)||(16911519-16911551)
chr4 (31-63)||(18969698-18969730)
[»] chr3 (15 HSPs)
chr3 (31-66)||(6411967-6412002)
chr3 (31-70)||(8247835-8247874)
chr3 (31-67)||(7697031-7697067)
chr3 (31-67)||(16735416-16735452)
chr3 (31-63)||(21874999-21875031)
chr3 (31-67)||(40272958-40272994)
chr3 (34-69)||(1217063-1217098)
chr3 (31-70)||(9276246-9276285)
chr3 (31-66)||(10870097-10870132)
chr3 (31-66)||(12914181-12914216)
chr3 (31-66)||(13730750-13730785)
chr3 (31-66)||(46421183-46421218)
chr3 (31-66)||(52926356-52926391)
chr3 (34-67)||(12525385-12525418)
chr3 (31-67)||(9607178-9607214)
[»] scaffold0057 (1 HSPs)
scaffold0057 (31-69)||(24913-24951)
[»] chr8 (13 HSPs)
chr8 (31-69)||(39461142-39461180)
chr8 (31-68)||(23286439-23286476)
chr8 (31-67)||(30454241-30454277)
chr8 (31-66)||(7136675-7136710)
chr8 (31-66)||(12670394-12670429)
chr8 (31-66)||(35261633-35261668)
chr8 (31-69)||(2626470-2626508)
chr8 (31-67)||(13160655-13160691)
chr8 (31-67)||(17823529-17823565)
chr8 (31-71)||(25250471-25250511)
chr8 (31-67)||(28817772-28817808)
chr8 (31-67)||(36720749-36720785)
chr8 (31-67)||(40605051-40605087)
[»] chr5 (12 HSPs)
chr5 (31-68)||(41014271-41014308)
chr5 (31-67)||(38879534-38879570)
chr5 (31-66)||(1565385-1565420)
chr5 (31-66)||(19438703-19438738)
chr5 (31-66)||(24448844-24448879)
chr5 (31-66)||(35710267-35710302)
chr5 (33-67)||(22600407-22600441)
chr5 (31-69)||(41956883-41956921)
chr5 (31-63)||(4619252-4619284)
chr5 (31-63)||(27328709-27328741)
chr5 (31-67)||(37024700-37024736)
chr5 (31-63)||(43334159-43334191)
[»] chr2 (11 HSPs)
chr2 (31-64)||(17896215-17896248)
chr2 (31-71)||(8455462-8455502)
chr2 (31-75)||(12024064-12024107)
chr2 (31-67)||(14530271-14530307)
chr2 (31-67)||(25079864-25079900)
chr2 (31-67)||(39189567-39189603)
chr2 (31-69)||(23397717-23397755)
chr2 (31-65)||(24200771-24200805)
chr2 (31-64)||(11514392-11514425)
chr2 (31-68)||(22371009-22371046)
chr2 (31-67)||(21779405-21779441)
[»] scaffold0187 (2 HSPs)
scaffold0187 (31-63)||(10194-10226)
scaffold0187 (31-63)||(20522-20554)
[»] chr1 (11 HSPs)
chr1 (31-67)||(34714599-34714635)
chr1 (31-67)||(34725242-34725278)
chr1 (31-67)||(41319952-41319988)
chr1 (31-66)||(10668197-10668232)
chr1 (31-66)||(18944620-18944655)
chr1 (31-66)||(22930213-22930248)
chr1 (31-66)||(32632702-32632737)
chr1 (31-69)||(14617012-14617050)
chr1 (31-68)||(19932898-19932935)
chr1 (31-64)||(40424721-40424754)
chr1 (31-63)||(23768466-23768498)
[»] scaffold0168 (1 HSPs)
scaffold0168 (31-66)||(30533-30568)
[»] scaffold0024 (1 HSPs)
scaffold0024 (31-68)||(83827-83864)
[»] scaffold0005 (1 HSPs)
scaffold0005 (31-67)||(226552-226588)


Alignment Details
Target: chr6 (Bit Score: 106; Significance: 5e-53; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 67 - 236
Target Start/End: Complemental strand, 13539966 - 13539792
Alignment:
Q  67 ataaatttgcgttgaaatgatgcttggaaaattgatgaaactgtgtactatata--ggttgatttagctgcacagaagnnnnnnnntaagaa---gattc 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||         ||||||   |||||    
T  13539966 ataaatttgcgttgaaatgatgcttggaaaattgatgaaactgtgtactatatataggttgttttagctgcacagaaaaagaagaataagaacaagattc 13539867  T
Q  162 cttcttgtgagctatattttgatatgaagtacactgtgccttatatgacattctcaaaaatttctaatggtatga 236  Q
    |||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||    
T  13539866 cttcttgtgagctatattttgatatgaagtacactgcgccgtatctgacattctcaaaaatttctaatggtatga 13539792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 8409232 - 8409194
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctcata 69  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  8409232 acaacaactttaccagttgcgccaaggttacccctcata 8409194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 66
Target Start/End: Complemental strand, 1346953 - 1346918
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctc 66  Q
    ||||||||||||||||||||| ||||||||||||||    
T  1346953 acaacaactttaccagttgcgccaaggttacccctc 1346918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 66
Target Start/End: Original strand, 1354901 - 1354936
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctc 66  Q
    ||||||||||||||||||||| ||||||||||||||    
T  1354901 acaacaactttaccagttgcgccaaggttacccctc 1354936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 1941844 - 1941803
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctcataaat 72  Q
    ||||||||||||||||||||  |||||||||||||| |||||    
T  1941844 acaacaactttaccagttgcaccaaggttacccctcgtaaat 1941803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 3815223 - 3815256
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccc 64  Q
    ||||||||||||||||||||| ||||||||||||    
T  3815223 acaacaactttaccagttgcgccaaggttacccc 3815256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 9161112 - 9161075
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctcat 68  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  9161112 acaacaactttaccgattgcgtcaaggttacccctcat 9161075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 66
Target Start/End: Original strand, 22699116 - 22699151
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctc 66  Q
    ||||||||||||||||||||||||||||||||||||    
T  22699116 acaacaactttaccagttgcgtcaaggttacccctc 22699151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 65
Target Start/End: Original strand, 5180303 - 5180337
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccct 65  Q
    |||||||||||||||||||||||||||||||||||    
T  5180303 acaacaactttaccagttgcgtcaaggttacccct 5180337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 69
Target Start/End: Original strand, 48735267 - 48735305
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctcata 69  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  48735267 acaacaactttaccagttgcgccaaggttacccctcata 48735305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 42495981 - 42496018
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctcat 68  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  42495981 acaacaactttaccagttgcgccaaggttacccctcat 42496018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 2541166 - 2541202
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctca 67  Q
    ||||||||||||||||||||| |||||||||||||||    
T  2541166 acaacaactttaccagttgcgccaaggttacccctca 2541202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 32758250 - 32758214
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctca 67  Q
    ||||||||||||||||||||| |||||||||||||||    
T  32758250 acaacaactttaccagttgcgccaaggttacccctca 32758214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 66
Target Start/End: Original strand, 21172153 - 21172188
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctc 66  Q
    ||||||||||||||||||||| ||||||||||||||    
T  21172153 acaacaactttaccagttgcgccaaggttacccctc 21172188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 70
Target Start/End: Original strand, 34626353 - 34626392
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctcataa 70  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  34626353 acaacaactttaccagttgcgctaaggttacccctcataa 34626392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 66
Target Start/End: Complemental strand, 42798658 - 42798623
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctc 66  Q
    ||||||||||||||||||||| ||||||||||||||    
T  42798658 acaacaactttaccagttgcgccaaggttacccctc 42798623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 66
Target Start/End: Complemental strand, 43557461 - 43557426
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctc 66  Q
    ||||||||||||||||||||| ||||||||||||||    
T  43557461 acaacaactttaccagttgcggcaaggttacccctc 43557426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 66
Target Start/End: Complemental strand, 46354183 - 46354148
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctc 66  Q
    ||||||||||||||||||||| ||||||||||||||    
T  46354183 acaacaactttaccagttgcgccaaggttacccctc 46354148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 66
Target Start/End: Original strand, 47077999 - 47078034
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctc 66  Q
    ||||||||||||||||||||| ||||||||||||||    
T  47077999 acaacaactttaccagttgcgccaaggttacccctc 47078034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 65
Target Start/End: Complemental strand, 18327023 - 18326989
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccct 65  Q
    ||||||||||||||||||||| |||||||||||||    
T  18327023 acaacaactttaccagttgcgccaaggttacccct 18326989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 35334960 - 35334997
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctcat 68  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  35334960 acaacaactttaccagttgcgccaaggttatccctcat 35334997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 42805513 - 42805476
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctcat 68  Q
    |||||||||||||||||| || ||||||||||||||||    
T  42805513 acaacaactttaccagttacgccaaggttacccctcat 42805476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 2663076 - 2663112
Alignment:
Q  30 aacaacaactttaccagttgcgtcaaggttacccctc 66  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  2663076 aacaacaactttactagttgcgccaaggttacccctc 2663112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 66
Target Start/End: Complemental strand, 20405082 - 20405047
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctc 66  Q
    ||||||||||||||||||||||||||||||||||||    
T  20405082 acaacaactttaccagttgcgtcaaggttacccctc 20405047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 66
Target Start/End: Original strand, 55766612 - 55766647
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctc 66  Q
    ||||||||||||||||||||||||||||||||||||    
T  55766612 acaacaactttaccagttgcgtcaaggttacccctc 55766647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 66
Target Start/End: Original strand, 55830867 - 55830902
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctc 66  Q
    ||||||||||||||||||||||||||||||||||||    
T  55830867 acaacaactttaccagttgcgtcaaggttacccctc 55830902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 48598969 - 48599006
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctcat 68  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  48598969 acaacaactttaccagttgcgccaaggttacccctcat 48599006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 5648248 - 5648212
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctca 67  Q
    ||||||||||||||||||||| |||||||||||||||    
T  5648248 acaacaactttaccagttgcgccaaggttacccctca 5648212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 6430771 - 6430807
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctca 67  Q
    ||||||||||||||||||||| |||||||||||||||    
T  6430771 acaacaactttaccagttgcgccaaggttacccctca 6430807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 20224973 - 20224937
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctca 67  Q
    ||||||||||||||||||||| |||||||||||||||    
T  20224973 acaacaactttaccagttgcgccaaggttacccctca 20224937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 30639369 - 30639333
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctca 67  Q
    ||||||||||||||||||||| |||||||||||||||    
T  30639369 acaacaactttaccagttgcgccaaggttacccctca 30639333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 66
Target Start/End: Complemental strand, 10660393 - 10660358
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctc 66  Q
    ||||||||||||||||||||| ||||||||||||||    
T  10660393 acaacaactttaccagttgcgccaaggttacccctc 10660358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 66
Target Start/End: Complemental strand, 10874538 - 10874503
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctc 66  Q
    ||||||||||||||||||||| ||||||||||||||    
T  10874538 acaacaactttaccagttgcgccaaggttacccctc 10874503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 66
Target Start/End: Complemental strand, 23501782 - 23501747
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctc 66  Q
    ||||||||||||||||||||| ||||||||||||||    
T  23501782 acaacaactttaccagttgcgccaaggttacccctc 23501747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 5306813 - 5306846
Alignment:
Q  35 caactttaccagttgcgtcaaggttacccctcat 68  Q
    ||||||||||||||||| ||||||||||||||||    
T  5306813 caactttaccagttgcgccaaggttacccctcat 5306846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 14590826 - 14590790
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctca 67  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  14590826 acaacaactttaccagttgcgccaaggttaccactca 14590790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 16911551 - 16911519
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttaccc 63  Q
    ||||||||||||||||||||| |||||||||||    
T  16911551 acaacaactttaccagttgcgccaaggttaccc 16911519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 18969730 - 18969698
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttaccc 63  Q
    ||||||||||||||||||||| |||||||||||    
T  18969730 acaacaactttaccagttgcgccaaggttaccc 18969698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 66
Target Start/End: Original strand, 6411967 - 6412002
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctc 66  Q
    ||||||||||||||||||||||||||||||||||||    
T  6411967 acaacaactttaccagttgcgtcaaggttacccctc 6412002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 70
Target Start/End: Original strand, 8247835 - 8247874
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctcataa 70  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  8247835 acaacaactttaccagttgcgccaaggttacccctcataa 8247874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 7697031 - 7697067
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctca 67  Q
    ||||||||||||||||||||| |||||||||||||||    
T  7697031 acaacaactttaccagttgcgccaaggttacccctca 7697067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 16735452 - 16735416
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctca 67  Q
    ||||||||||||||||||||| |||||||||||||||    
T  16735452 acaacaactttaccagttgcgccaaggttacccctca 16735416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 21875031 - 21874999
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttaccc 63  Q
    |||||||||||||||||||||||||||||||||    
T  21875031 acaacaactttaccagttgcgtcaaggttaccc 21874999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 40272958 - 40272994
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctca 67  Q
    ||||||||||||||||||||| |||||||||||||||    
T  40272958 acaacaactttaccagttgcgccaaggttacccctca 40272994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 69
Target Start/End: Complemental strand, 1217098 - 1217063
Alignment:
Q  34 acaactttaccagttgcgtcaaggttacccctcata 69  Q
    |||||||||||||||||| |||||||||||||||||    
T  1217098 acaactttaccagttgcgccaaggttacccctcata 1217063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 70
Target Start/End: Complemental strand, 9276285 - 9276246
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctcataa 70  Q
    ||||||||||||| ||||||| ||||||||||||||||||    
T  9276285 acaacaactttactagttgcgccaaggttacccctcataa 9276246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 66
Target Start/End: Original strand, 10870097 - 10870132
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctc 66  Q
    ||||||||||||||||||||| ||||||||||||||    
T  10870097 acaacaactttaccagttgcgccaaggttacccctc 10870132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 66
Target Start/End: Original strand, 12914181 - 12914216
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctc 66  Q
    ||||||||||||||||||||| ||||||||||||||    
T  12914181 acaacaactttaccagttgcgccaaggttacccctc 12914216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 66
Target Start/End: Original strand, 13730750 - 13730785
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctc 66  Q
    ||||||||||||||||||||| ||||||||||||||    
T  13730750 acaacaactttaccagttgcgccaaggttacccctc 13730785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 66
Target Start/End: Original strand, 46421183 - 46421218
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctc 66  Q
    ||||||||||||||||||||| ||||||||||||||    
T  46421183 acaacaactttaccagttgcgccaaggttacccctc 46421218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 66
Target Start/End: Original strand, 52926356 - 52926391
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctc 66  Q
    ||||||||||||||||||||| ||||||||||||||    
T  52926356 acaacaactttaccagttgcgccaaggttacccctc 52926391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 12525418 - 12525385
Alignment:
Q  34 acaactttaccagttgcgtcaaggttacccctca 67  Q
    |||||||||||||||||| |||||||||||||||    
T  12525418 acaactttaccagttgcgccaaggttacccctca 12525385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 9607214 - 9607178
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctca 67  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  9607214 acaacaactttacaagttgcgccaaggttacccctca 9607178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 69
Target Start/End: Original strand, 24913 - 24951
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctcata 69  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  24913 acaacaactttaccagttgcgccaaggttacccctcata 24951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 69
Target Start/End: Original strand, 39461142 - 39461180
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctcata 69  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  39461142 acaacaactttaccagttgcgccaaggttacccctcata 39461180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 23286439 - 23286476
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctcat 68  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  23286439 acaacaactttaccagttgcgacaaggttacccctcat 23286476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 30454241 - 30454277
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctca 67  Q
    ||||||||||||||||||||| |||||||||||||||    
T  30454241 acaacaactttaccagttgcgccaaggttacccctca 30454277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 66
Target Start/End: Original strand, 7136675 - 7136710
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctc 66  Q
    ||||||||||||||||||||| ||||||||||||||    
T  7136675 acaacaactttaccagttgcgccaaggttacccctc 7136710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 66
Target Start/End: Original strand, 12670394 - 12670429
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctc 66  Q
    ||||||||||||||||||||| ||||||||||||||    
T  12670394 acaacaactttaccagttgcgccaaggttacccctc 12670429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 66
Target Start/End: Complemental strand, 35261668 - 35261633
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctc 66  Q
    ||||||||||||||||||||| ||||||||||||||    
T  35261668 acaacaactttaccagttgcgccaaggttacccctc 35261633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 2626508 - 2626470
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctcata 69  Q
    ||||||||||||||| ||||| |||||||||||||||||    
T  2626508 acaacaactttaccaattgcgccaaggttacccctcata 2626470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 13160691 - 13160655
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctca 67  Q
    ||||||||||||||||||||| | |||||||||||||    
T  13160691 acaacaactttaccagttgcgccgaggttacccctca 13160655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 17823565 - 17823529
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctca 67  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  17823565 acaacaactttaccagttgcgccaagattacccctca 17823529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 25250511 - 25250471
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctcataaa 71  Q
    ||||||||||||||||||| | |||||||||| ||||||||    
T  25250511 acaacaactttaccagttgtgccaaggttacctctcataaa 25250471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 28817772 - 28817808
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctca 67  Q
    ||||||||||||||||||||  |||||||||||||||    
T  28817772 acaacaactttaccagttgcaccaaggttacccctca 28817808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 36720785 - 36720749
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctca 67  Q
    |||||||||||||||||| || |||||||||||||||    
T  36720785 acaacaactttaccagttacgccaaggttacccctca 36720749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 40605051 - 40605087
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctca 67  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  40605051 acaacaactttaccagttgcgccaaagttacccctca 40605087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 41014308 - 41014271
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctcat 68  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  41014308 acaacaactttaccagttgcgccaaggttacccctcat 41014271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 38879570 - 38879534
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctca 67  Q
    ||||||||||||||||||||| |||||||||||||||    
T  38879570 acaacaactttaccagttgcgccaaggttacccctca 38879534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 66
Target Start/End: Complemental strand, 1565420 - 1565385
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctc 66  Q
    ||||||||||||||||||||| ||||||||||||||    
T  1565420 acaacaactttaccagttgcgccaaggttacccctc 1565385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 66
Target Start/End: Complemental strand, 19438738 - 19438703
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctc 66  Q
    ||||||||||||||||||||| ||||||||||||||    
T  19438738 acaacaactttaccagttgcgccaaggttacccctc 19438703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 66
Target Start/End: Complemental strand, 24448879 - 24448844
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctc 66  Q
    ||||||||||||||||||||| ||||||||||||||    
T  24448879 acaacaactttaccagttgcgccaaggttacccctc 24448844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 66
Target Start/End: Complemental strand, 35710302 - 35710267
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctc 66  Q
    ||||||||||||||||||||| ||||||||||||||    
T  35710302 acaacaactttaccagttgcgccaaggttacccctc 35710267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 67
Target Start/End: Complemental strand, 22600441 - 22600407
Alignment:
Q  33 aacaactttaccagttgcgtcaaggttacccctca 67  Q
    |||||||||||||||| ||||||||||||||||||    
T  22600441 aacaactttaccagttacgtcaaggttacccctca 22600407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 41956921 - 41956883
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctcata 69  Q
    ||||||||||||||||||||| ||| |||||||||||||    
T  41956921 acaacaactttaccagttgcgccaatgttacccctcata 41956883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 4619252 - 4619284
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttaccc 63  Q
    ||||||||||||||||||||| |||||||||||    
T  4619252 acaacaactttaccagttgcgccaaggttaccc 4619284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 27328741 - 27328709
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttaccc 63  Q
    ||||||||||||||| |||||||||||||||||    
T  27328741 acaacaactttaccaattgcgtcaaggttaccc 27328709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 37024700 - 37024736
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctca 67  Q
    ||||||||||||||||||||  |||||||||||||||    
T  37024700 acaacaactttaccagttgcaccaaggttacccctca 37024736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 43334191 - 43334159
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttaccc 63  Q
    ||||||||||||||||||||| |||||||||||    
T  43334191 acaacaactttaccagttgcgccaaggttaccc 43334159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 17896248 - 17896215
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccc 64  Q
    ||||||||||||||||||||||||||||||||||    
T  17896248 acaacaactttaccagttgcgtcaaggttacccc 17896215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 8455462 - 8455502
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctcataaa 71  Q
    ||||||||||||||||||||| |||||||||||||| ||||    
T  8455462 acaacaactttaccagttgcgccaaggttacccctcttaaa 8455502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 12024064 - 12024107
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctcataaatttg 75  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||    
T  12024064 acaacaactttaccagttgcgccaaggttacccctc-taaatttg 12024107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 14530307 - 14530271
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctca 67  Q
    ||||||||||||||||||||| |||||||||||||||    
T  14530307 acaacaactttaccagttgcgccaaggttacccctca 14530271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 25079864 - 25079900
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctca 67  Q
    ||||||||||||||||||||| |||||||||||||||    
T  25079864 acaacaactttaccagttgcgccaaggttacccctca 25079900  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 39189567 - 39189603
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctca 67  Q
    ||||||||||||||||||||| |||||||||||||||    
T  39189567 acaacaactttaccagttgcgccaaggttacccctca 39189603  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 23397755 - 23397717
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctcata 69  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  23397755 acaacaactttaccagttgcaccaaggttacccctcata 23397717  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 65
Target Start/End: Original strand, 24200771 - 24200805
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccct 65  Q
    |||||||||||||||||||| ||||||||||||||    
T  24200771 acaacaactttaccagttgcatcaaggttacccct 24200805  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 11514425 - 11514392
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccc 64  Q
    ||||||||||||||||||||| ||||||||||||    
T  11514425 acaacaactttaccagttgcgccaaggttacccc 11514392  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 22371046 - 22371009
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctcat 68  Q
    ||||||||||||||||||| | ||||||||||||||||    
T  22371046 acaacaactttaccagttgggccaaggttacccctcat 22371009  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 21779405 - 21779441
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctca 67  Q
    |||||||||| |||||||||| |||||||||||||||    
T  21779405 acaacaacttcaccagttgcgccaaggttacccctca 21779441  T

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Target: scaffold0187 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 10194 - 10226
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttaccc 63  Q
    |||||||||||||||||||||||||||||||||    
T  10194 acaacaactttaccagttgcgtcaaggttaccc 10226  T

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Target: scaffold0187; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 20522 - 20554
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttaccc 63  Q
    |||||||||||||||||||||||||||||||||    
T  20522 acaacaactttaccagttgcgtcaaggttaccc 20554  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 34714635 - 34714599
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctca 67  Q
    ||||||||||||||||||||| |||||||||||||||    
T  34714635 acaacaactttaccagttgcgccaaggttacccctca 34714599  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 34725242 - 34725278
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctca 67  Q
    ||||||||||||||||||||| |||||||||||||||    
T  34725242 acaacaactttaccagttgcgccaaggttacccctca 34725278  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 41319952 - 41319988
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctca 67  Q
    ||||||||||||||||||| |||||||||||||||||    
T  41319952 acaacaactttaccagttgtgtcaaggttacccctca 41319988  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 66
Target Start/End: Complemental strand, 10668232 - 10668197
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctc 66  Q
    ||||||||||||||||||||| ||||||||||||||    
T  10668232 acaacaactttaccagttgcgccaaggttacccctc 10668197  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 66
Target Start/End: Complemental strand, 18944655 - 18944620
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctc 66  Q
    ||||||||||||||||||||| ||||||||||||||    
T  18944655 acaacaactttaccagttgcgccaaggttacccctc 18944620  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 66
Target Start/End: Original strand, 22930213 - 22930248
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctc 66  Q
    ||||||||||||||||||||| ||||||||||||||    
T  22930213 acaacaactttaccagttgcgccaaggttacccctc 22930248  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 66
Target Start/End: Original strand, 32632702 - 32632737
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctc 66  Q
    ||||||||||||||||||||| ||||||||||||||    
T  32632702 acaacaactttaccagttgcgccaaggttacccctc 32632737  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 14617050 - 14617012
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctcata 69  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  14617050 acaacaactttaccggttgcgccaaggttacccctcata 14617012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 19932898 - 19932935
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctcat 68  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  19932898 acaacaactttaccagttgcgccaaggtaacccctcat 19932935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 40424754 - 40424721
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccc 64  Q
    ||||||||||||||||||||| ||||||||||||    
T  40424754 acaacaactttaccagttgcgccaaggttacccc 40424721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 23768466 - 23768498
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttaccc 63  Q
    ||||||||||||||||||||||| |||||||||    
T  23768466 acaacaactttaccagttgcgtcgaggttaccc 23768498  T

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Target: scaffold0168 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 66
Target Start/End: Complemental strand, 30568 - 30533
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctc 66  Q
    ||||||||||||||||||||| ||||||||||||||    
T  30568 acaacaactttaccagttgcgccaaggttacccctc 30533  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 83864 - 83827
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctcat 68  Q
    ||||||||||||| ||||||| ||||||||||||||||    
T  83864 acaacaactttactagttgcgccaaggttacccctcat 83827  T

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Target: scaffold0005 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 226552 - 226588
Alignment:
Q  31 acaacaactttaccagttgcgtcaaggttacccctca 67  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  226552 acaacaactttaccagttgcgccaaggttaccactca 226588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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