View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9609_low_21 (Length: 313)
Name: NF9609_low_21
Description: NF9609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9609_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 22 - 302
Target Start/End: Complemental strand, 1157185 - 1156905
Alignment:
| Q |
22 |
atttatggtaggtgtggtaatcgtttgaactgttcagtttcgctagcacagttgtgcaatggatttgttaaaggtgctaccactttcatcattactgatg |
121 |
Q |
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| T |
1157185 |
atttatggtaggtgtggtaatcgcttgaaccgttcagtttccctagcacagctgtgcaatggatttgttaaaggtgctacgacttttgtcattactgatg |
1157086 |
T |
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| Q |
122 |
atctgattgtcttgccgcactccatcgatcacacgttattggatctgatcaagaatttgggaatgaaaaacacaagttcagtaaaagaaatgactgtcaa |
221 |
Q |
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| T |
1157085 |
atctatttgtctcgccacactccatcaatcacacgttattggatctgatcaagaatttgggaatgaaaaacacaagttcagtaaaagaaatgactgtcaa |
1156986 |
T |
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| Q |
222 |
tgtcactaaggaaagggttttatatttgcaattcatttttgtttcctaaatcagtgttcatagtttcttggtactttctct |
302 |
Q |
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| T |
1156985 |
tgtcactaaggaaaaggttttatatttgcaattcatttttgtttcctaaatcattgttcttagtttcttagtacttgctct |
1156905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 6e-40; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 113 - 287
Target Start/End: Complemental strand, 23259113 - 23258938
Alignment:
| Q |
113 |
ttactgatgatctgattgtcttgccgcactccatcgatcacacgttattggatctgatcaagaatttgggaatgaaaaacacaagttcagtaaaagaaat |
212 |
Q |
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| T |
23259113 |
ttactgatgatctaactgtcttgccgcactctatggatcacacgttgtttggtctggtcaataatttgcaaatgagaaacacaagttcagtaaaagaaat |
23259014 |
T |
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| Q |
213 |
gactgtcaatgtcactaaggaaagggtttt-atatttgcaattcatttttgtttcctaaatcagtgttcatagttt |
287 |
Q |
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| T |
23259013 |
gacggtctatgtcacgaaggaaaaggttttaatatttgcaattaatttttgctccctaaatcattgttcttagttt |
23258938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 243
Target Start/End: Complemental strand, 23251337 - 23251223
Alignment:
| Q |
129 |
tgtcttgccgcactccatcgatcacacgttattggatctgatcaagaatttgggaatgaaaaacacaagttcagtaaaagaaatgactgtcaatgtcact |
228 |
Q |
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| T |
23251337 |
tgtcttgccgcattccatggatcacatgatctttgatctgagcaacaactttggaataaaaagcacaagttcgatcaaagaaatgacggtcaatgtcaca |
23251238 |
T |
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| Q |
229 |
aaggaaagggtttta |
243 |
Q |
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| T |
23251237 |
aagggaaaggtttta |
23251223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 23316758 - 23316708
Alignment:
| Q |
192 |
cacaagttcagtaaaagaaatgactgtcaatgtcactaaggaaagggtttt |
242 |
Q |
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| T |
23316758 |
cacaagttctgcaaaagaaatgactgtaaatgtcactaaagaaaaggtttt |
23316708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 246
Target Start/End: Complemental strand, 23327138 - 23327061
Alignment:
| Q |
170 |
tcaagaatttgggaatgaaaaacacaagttcagtaaaagaaatgactgtcaatgtcactaaggaa-agggttttatat |
246 |
Q |
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| T |
23327138 |
tcaagaattatgggataaaaagcacaagttcactaaagcaaatgactgtcaatgttactaaggaacaggtttttatat |
23327061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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