View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9609_low_27 (Length: 228)
Name: NF9609_low_27
Description: NF9609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9609_low_27 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 38241236 - 38241035
Alignment:
| Q |
18 |
aatgtaaaacaaattaagtttgacttcaaacatannnnnnn-gttctctatttttcatttgagggatttcattcaccaaattatcttatatagtactttt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38241236 |
aatgtaaaacaaattaagtttgacttcaaacatactttttttgttctctatttttcatttgagggatttcattcaccaaattatcttatatagtactttt |
38241137 |
T |
|
| Q |
117 |
tataattagaagttgaaaagaacttttgacagatatattattcaaataagttatgttatacttttggtatgttttgatgtttttcaatagtattcatctc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38241136 |
tataattagaagttgaaaagaacttttgacagatatattattcaaataagttatgttatacttttggtatgttttgatgtttttcaatagtattcatctc |
38241037 |
T |
|
| Q |
217 |
tg |
218 |
Q |
| |
|
|| |
|
|
| T |
38241036 |
tg |
38241035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University