View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9609_low_30 (Length: 225)
Name: NF9609_low_30
Description: NF9609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9609_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 12 - 210
Target Start/End: Original strand, 12233710 - 12233908
Alignment:
| Q |
12 |
attattctccaaattcagaaagaagacaagaccatttttctataatactaatcctgctgaaaccttagtctaatatttttaaatttcaatacaacttttc |
111 |
Q |
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| T |
12233710 |
attattctccaaattcagaaagaagacaagaccatttttctataatactaatcctgctgaaaccttagtctaatatttttaaatttcaatacaacttttc |
12233809 |
T |
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| Q |
112 |
tcaagcaaaggaatatgcagcagattaaagtcctgaaggtaacttgaagaaattacatgtaaactaatataaagtccaaattaatcacaatggaaatag |
210 |
Q |
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| T |
12233810 |
tcaagcaaaggaatatgcagcagattaaagtcctgaagataacttgaagaaattacatgtaaactaatataaagtccaaattaatcacaatggaaatag |
12233908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 52550512 - 52550439
Alignment:
| Q |
31 |
aagaagacaagaccatttttctataatactaatcctgctgaaaccttagtctaatatttttaaatttcaatacaa |
105 |
Q |
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| T |
52550512 |
aagaagacatcaccatttttctataatacaaattctgctgaagccttagtctaat-tttttaaatttcaatacaa |
52550439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 50672096 - 50672154
Alignment:
| Q |
46 |
tttttctataatactaatcctgctgaaaccttagtctaatatttttaaatttcaatacaa |
105 |
Q |
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| T |
50672096 |
tttttctataatacaaatcctgatgaaaccttagtctaa-atttttaaattttaatacaa |
50672154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 23591125 - 23591183
Alignment:
| Q |
46 |
tttttctataatactaatcctgctgaaaccttagtctaatatttttaaatttcaatacaa |
105 |
Q |
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|||||||||||||| ||| ||| |||||||||||||||| |||||||||||| ||||||| |
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| T |
23591125 |
tttttctataatacaaattctgatgaaaccttagtctaa-atttttaaattttaatacaa |
23591183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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