View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9609_low_4 (Length: 520)
Name: NF9609_low_4
Description: NF9609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9609_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 18 - 505
Target Start/End: Original strand, 5083661 - 5084148
Alignment:
| Q |
18 |
catgtggaatggttcctttgatgtgatttgatttcaaatttaaatattctaacattgacaaattggatatagattgaggaatatctccatcaatattatt |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||| ||||||| || |
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| T |
5083661 |
catgtggaatggttcctttgatgtgatttgatttcaaatttagatattctaacattgacaagttggatatagattgaggaataactccaacaatattgtt |
5083760 |
T |
|
| Q |
118 |
ataaccaatatccaactgttgaagtttagataagtcccctatccttgaaggaatttctccaacaaaattattgtcgctcaaatccaaccatttcaatctc |
217 |
Q |
| |
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| | ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||| ||||||||||| |
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| T |
5083761 |
ttgccgaatatccaattgttgaagttttgataagtcccctatccttgaaggaatttctccaacaaaatcattgttgctcaaattcaacaatttcaatctc |
5083860 |
T |
|
| Q |
218 |
ttcaactgaagtaactcatgtggtaactcaccatagaaactattgccttgtaaatcaagaacaacaaggaaagaaagatttcccaattgaggggaaattg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
5083861 |
ttcaactgaagtaactcatgtggtaactcaccatggaaactatttccttgtagatcaagaaatacaaggaaagagagatttcccaattgaggggaaattg |
5083960 |
T |
|
| Q |
318 |
taccttcaaggcccatgttactaagattcaatgcatttactcttccatgatgttcatcacaagtaacaccaacccaattgcatgaagagaaagaagaagt |
417 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5083961 |
taccttcaaggtccatgttactaagattcaatgcatttactcttccatgatgttcatcacaagtaacaccaacccaattgcatgaagagaaagaagaagt |
5084060 |
T |
|
| Q |
418 |
agaagaggaaattgaccaattactaagaatgtgataagggtctaaggtaattgaggatttgaatgcaagaagtgcaaattcatctgtg |
505 |
Q |
| |
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||||||||||||||||||||| ||||| || |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
5084061 |
agaagaggaaattgaccaatttctaagcatatgataaggatctaaggtaattgaggatttgaatgcaagaagtgaaaattcatctgtg |
5084148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 505
Target Start/End: Complemental strand, 5111410 - 5110923
Alignment:
| Q |
18 |
catgtggaatggttcctttgatgtgatttgatttcaaatttaaatattctaacattgacaaattggatatagattgaggaatatctccatcaatattatt |
117 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||| || || |||||||||||| | ||||||||||||||||||| ||||| ||| |||||| |
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|
| T |
5111410 |
catgtggaatggttcctttgatgaaatttgtactcaaatctaggtaccgtaacattgacaagtcggatatagattgaggaatagctccaacaaaattatt |
5111311 |
T |
|
| Q |
118 |
ataaccaatatccaactgttgaagtttagataagtcccctatccttgaaggaatttctccaacaaaattattgtcgctcaaatccaaccatttcaatctc |
217 |
Q |
| |
|
| | || |||||| || |||||||| | |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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|
| T |
5111310 |
aaagtaaagatccaaatgatgaagttttgctaagtcccctatccttgaaggaatttctccaacaaaatcattgtcactcaaatccaaccatttcaatctc |
5111211 |
T |
|
| Q |
218 |
ttcaactgaagtaactcatgtggtaactcaccatagaaactattgccttgtaaatcaagaacaacaaggaaagaaagatttcccaattgaggggaaattg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
5111210 |
ttcaactgaagtaactcatgtggtaactcaccatagaaactattgccttgtaaatcaagaacaacaaggaaagaaagatttcccaattgaggagaaattg |
5111111 |
T |
|
| Q |
318 |
taccttcaaggcccatgttactaagattcaatgcatttactcttccatgatgttcatcacaagtaacaccaacccaattgcatgaagagaaagaagaagt |
417 |
Q |
| |
|
||||||||||| |||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5111110 |
taccttcaaggtccatgttattaagatccaatgcattcactcttccatgatgttcatcacaagtaacaccaacccaattgcatgaagagaaagaagaagt |
5111011 |
T |
|
| Q |
418 |
agaagaggaaattgaccaattactaagaatgtgataagggtctaaggtaattgaggatttgaatgcaagaagtgcaaattcatctgtg |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5111010 |
agaagaggaaattgaccaattactaagaatatcataagggtctaaggtaattgaggatttgaatgcaagaagtgcaaattcatctgtg |
5110923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 44 - 501
Target Start/End: Complemental strand, 5094381 - 5093924
Alignment:
| Q |
44 |
tttgatttcaaatttaaatattctaacattgacaaattggatatagattgaggaatatctccatcaatattattataaccaatatccaactgttgaagtt |
143 |
Q |
| |
|
|||||| ||||| || |||||||||||||||||| ||| ||||||||||||||||| ||||| ||||||||||||| | ||||||||| |||||||||| |
|
|
| T |
5094381 |
tttgatgtcaaacgtagatattctaacattgacaagttgaatatagattgaggaataactccaacaatattattatagctaatatccaattgttgaagtt |
5094282 |
T |
|
| Q |
144 |
tagataagtcccctatccttgaaggaatttctccaacaaaattattgtcgctcaaatccaaccatttcaatctcttcaactgaagtaactcatgtggtaa |
243 |
Q |
| |
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| ||||| |||||||||||||||||||||||||||||||||| ||||| ||| |||| |||| |||||||||| ||||||||||| |||||||||||||| |
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|
| T |
5094281 |
ttgataactcccctatccttgaaggaatttctccaacaaaatcattgttgcttaaattcaacaatttcaatcttttcaactgaagcaactcatgtggtaa |
5094182 |
T |
|
| Q |
244 |
ctcaccatagaaactattgccttgtaaatcaagaacaacaaggaaagaaagatttcccaattgaggggaaattgtaccttcaaggcccatgttactaaga |
343 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
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|
| T |
5094181 |
ctcaccatggaaactattgccctgtaaatcaagaacaataaggaaagaaagatttcccaattgaggagaaattgtaccttcaaggcccatgctactaaga |
5094082 |
T |
|
| Q |
344 |
ttcaatgcatttactcttccatgatgttcatcacaagtaacaccaacccaattgcatgaagagaaagaagaagtagaagaggaaattgaccaattactaa |
443 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
5094081 |
ttcaatgcatttactcttccatggtgttcatcacaagtaacaccaacccaattgcatgaagacaaagaagaagtagaagaggaaattgaccaattactaa |
5093982 |
T |
|
| Q |
444 |
gaatgtgataagggtctaaggtaattgaggatttgaatgcaagaagtgcaaattcatc |
501 |
Q |
| |
|
|||| | ||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5093981 |
gaatatcataagggtctaaggttattgaggatttgaatgcaagaagtgaaaattcatc |
5093924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 167 - 501
Target Start/End: Original strand, 14427589 - 14427926
Alignment:
| Q |
167 |
ggaatttctccaacaaaattattgtcgctcaaatccaaccatttcaatctctt---caactgaagtaactcatgtggtaactcaccatagaaactattgc |
263 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||| ||||||||| || ||| |||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14427589 |
ggaatttctccaacaaaatcattgttgctcaaatccaacattttcaatctattatgcaattgaaataactcatgtggtaactcaccatggaaactattgc |
14427688 |
T |
|
| Q |
264 |
cttgtaaatcaagaacaacaaggaaagaaagatttcccaattgaggggaaattgtaccttcaaggcccatgttactaagattcaatgcatttactcttcc |
363 |
Q |
| |
|
| |||| ||||||||||||||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14427689 |
catgtagatcaagaacaacaaggaaagagagatttcctaattgaggagaaatgttaccttcaaggcccatgttactaagattcaatgcatttactcttcc |
14427788 |
T |
|
| Q |
364 |
atgatgttcatcacaagtaacaccaacccaattgcatgaagagaaagaagaagtagaagaggaaattgaccaattactaagaatgtgataagggtctaag |
463 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
14427789 |
atgatgttcatcacaagtaacaccaacccaattgcatgaagagaaagaagaagcagaagtggaaattgaccaattactaagaatatgataaggatctaag |
14427888 |
T |
|
| Q |
464 |
gtaattgaggatttgaatgcaagaagtgcaaattcatc |
501 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14427889 |
gtaattgaggatttgaatgcaagaagtgaaaattcatc |
14427926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 318 - 502
Target Start/End: Complemental strand, 16872553 - 16872369
Alignment:
| Q |
318 |
taccttcaaggcccatgttactaagattcaatgcatttactcttccatgatgttcatcacaagtaacaccaacccaattgcatgaagagaaagaagaagt |
417 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||| ||||||| |
|
|
| T |
16872553 |
taccttcaagtcccatattactaagattcaatgcctttactcttccatgatgctcatcacaagtgacaccaacccaattacatgatgaga---aagaagt |
16872457 |
T |
|
| Q |
418 |
agaagaggaaattgacca---attactaagaatgtgataagggtctaaggtaattgaggatttgaatgcaagaagtgcaaattcatct |
502 |
Q |
| |
|
||||||||| |||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
16872456 |
agaagaggagattgaccaattattactaagcttgtgataagggtctaaggtaatagaggatttgaatgcaagaagtgaaaattcatct |
16872369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 166 - 326
Target Start/End: Complemental strand, 16873519 - 16873359
Alignment:
| Q |
166 |
aggaatttctccaacaaaattattgtcgctcaaatccaaccatttcaatctcttcaactgaagtaactcatgtggtaactcaccatagaaactattgcct |
265 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||| || || | |||| ||||| || ||||||||||| ||||| |||||||||| ||||||||||||| |
|
|
| T |
16873519 |
aggaatttctccaacaaaatcattgtagctcaagtctaatctcttcagtctctgcagatgaagtaactcttgtggaaactcaccatggaaactattgcct |
16873420 |
T |
|
| Q |
266 |
tgtaaatcaagaacaacaaggaaagaaagatttcccaattgaggggaaattgtaccttcaa |
326 |
Q |
| |
|
|||| ||||||| |||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
16873419 |
tgtaggtcaagaataacaaggaaagagagatttcccaattgagaggaaattgtaccttcaa |
16873359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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