View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9609_low_8 (Length: 415)
Name: NF9609_low_8
Description: NF9609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9609_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 16 - 402
Target Start/End: Complemental strand, 32620827 - 32620443
Alignment:
| Q |
16 |
cataaactcctagaaattagtgactttttatgacagaaatgtccaacaggttgtgaaaaactctctaatcaataatttgggagtccaagcagtttgaggt |
115 |
Q |
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|||||||||| | |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32620827 |
cataaactcccaaaaattagtgactttttatgatagaaatgttcaacaggttgtgaaaaactctctaatcaataatttgggagtccaagcagtttgaggt |
32620728 |
T |
|
| Q |
116 |
gcagataaaatactatggacttccatcaatacttgataaatgcaagatgtct-acttttaattttattaaggaaataaaataactatttctttgatcagt |
214 |
Q |
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||||||||||||| |||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32620727 |
gcagataaaataccatggacttccatcaatacttgataaaagcaagatgtcttatttttaattttattaaggaaataaaa-aactatttctttgatcagt |
32620629 |
T |
|
| Q |
215 |
agcatatatctttctaaaacaggtgatgtagtcattgtaaatccatgttgtaagctatttcatgctatgtataggtacatttctcattccatcatctctt |
314 |
Q |
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||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32620628 |
agcatatgtctttctaaaacaggtgatgtagtcattgtaagtccatgttgtaagctatttcatgctatgtataggtacatttctcattccatcatcactt |
32620529 |
T |
|
| Q |
315 |
agtaatgaaatagaagaaaatgttaannnnnnnnncttctgtgggggatatagttcgagtgacgaagttattggttggcggctcttct |
402 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32620528 |
agtaatgaaatagaagaaaatgttaa--tttttttcttctgtgggggatatagttcgagtaacgaagttattggttggcggctcttct |
32620443 |
T |
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