View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9610_high_2 (Length: 335)

Name: NF9610_high_2
Description: NF9610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9610_high_2
NF9610_high_2
[»] chr7 (6 HSPs)
chr7 (19-326)||(37580737-37581047)
chr7 (19-182)||(37480686-37480857)
chr7 (19-182)||(6778583-6778754)
chr7 (19-182)||(6774296-6774467)
chr7 (85-182)||(37476241-37476335)
chr7 (268-297)||(37466497-37466526)
[»] chr4 (3 HSPs)
chr4 (88-182)||(55118878-55118972)
chr4 (26-63)||(52791814-52791851)
chr4 (24-64)||(11160852-11160892)
[»] chr5 (1 HSPs)
chr5 (19-72)||(8992555-8992608)
[»] chr1 (1 HSPs)
chr1 (19-182)||(45071640-45071811)


Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 326
Target Start/End: Complemental strand, 37581047 - 37580737
Alignment:
Q  19 taaatgtcttgcgaatctcctccggcgtcttccccttgatcatgtccgccacaggtaagc---aacaggctcttgatgttcaagtaatttgcagcttgaa 115  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||    
T  37581047 taaacgtcttgcgaatctcctccggcgtcttccccttgatcatgtccgccacaggtaagcttcaacaggctcttgatgttcaagtaatttgcagcttgaa 37580948  T
Q  116 tgagttcgaaaagcatagcctgatcaacatgcttcatgaattcagcgtcccaagccttaagatcatccaaactcaccgcagcgtcccagcctgcttccac 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37580947 tgagttcgaaaagcatagcctgatcaacatgcttcatgaattcagcgtcccaagccttaagatcatccaaactcaccgcagcgtcccagcctgcttccac 37580848  T
Q  216 attcttctgaacctcaagatcattggaactcgcagactccaaaagcatagcgttatcaaccttaacgaaatcagcatcccaacaattaagatcatcagaa 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37580847 attcttctgaacctcaagatcattggaactcgcagactccaaaagcatagccttatcaaccttaacgaaatcagcatcccaacaattaagatcatcagaa 37580748  T
Q  316 ctagcctttgc 326  Q
    |||||||||||    
T  37580747 ctagcctttgc 37580737  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 37480686 - 37480857
Alignment:
Q  19 taaatgtcttgcgaatctcctccggcgtcttccccttgatcatgtccgccacag--------gtaag---caacaggctcttgatgttcaagtaatttgc 107  Q
    |||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||        |||||   ||  || |||||||| ||||||||||||||    
T  37480686 taaaagtctttcgaatttcctccggcgtcttccctttgatcatgtccgccacagtctggcaggtaagatccagtagactcttgatattcaagtaatttgc 37480785  T
Q  108 agcttgaatgagttcgaaaagcatagcctgatcaacatgcttcatgaattcagcgtcccaagccttaagatcatc 182  Q
    |||  |||||||  |||||||| |||||||||||||   ||| | ||||||||| ||||||  ||||||||||||    
T  37480786 agcaagaatgagaccgaaaagcttagcctgatcaac---ctttacgaattcagcatcccaattcttaagatcatc 37480857  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 6778754 - 6778583
Alignment:
Q  19 taaatgtcttgcgaatctcctccggcgtcttccccttgatcatgtccgccacag--------gtaag---caacaggctcttgatgttcaagtaatttgc 107  Q
    |||| ||||| ||||| |||||||| |||||||| |||||||||||||||||||        |||||   ||  || |||||||| ||||||||||||||    
T  6778754 taaaagtctttcgaatttcctccggtgtcttccctttgatcatgtccgccacagactggcatgtaagatccagtagactcttgatattcaagtaatttgc 6778655  T
Q  108 agcttgaatgagttcgaaaagcatagcctgatcaacatgcttcatgaattcagcgtcccaagccttaagatcatc 182  Q
    |||  ||||||| ||||||||  || ||||||||||   ||||| ||||||||| ||||||  ||||||||||||    
T  6778654 agcaagaatgagatcgaaaagtgtatcctgatcaac---cttcacgaattcagcatcccaattcttaagatcatc 6778583  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 6774467 - 6774296
Alignment:
Q  19 taaatgtcttgcgaatctcctccggcgtcttccccttgatcatgtccgcca--------caggtaag---caacaggctcttgatgttcaagtaatttgc 107  Q
    |||| ||||| ||||| |||||||| |||||||| ||||||||||||||||        ||||||||   ||| || |||||||| ||||||| ||||||    
T  6774467 taaaagtctttcgaatttcctccggtgtcttccctttgatcatgtccgccacatactggcaggtaagatccaatagactcttgatattcaagtcatttgc 6774368  T
Q  108 agcttgaatgagttcgaaaagcatagcctgatcaacatgcttcatgaattcagcgtcccaagccttaagatcatc 182  Q
    |||  ||||||| ||||||||| ||| ||||| |||   |||||  |||||||| ||||||  ||||||||||||    
T  6774367 agcaagaatgagatcgaaaagcgtagtctgatgaac---cttcacaaattcagcatcccaattcttaagatcatc 6774296  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 182
Target Start/End: Original strand, 37476241 - 37476335
Alignment:
Q  85 ctcttgatgttcaagtaatttgcagcttgaatgagttcgaaaagcatagcctgatcaacatgcttcatgaattcagcgtcccaagccttaagatcatc 182  Q
    |||||||| |||||||||||||||||  ||||||| ||||||||  || ||||||||||   ||| | ||||||||| ||||||  ||||||||||||    
T  37476241 ctcttgatattcaagtaatttgcagcaagaatgagatcgaaaagtttatcctgatcaac---ctttacgaattcagcatcccaattcttaagatcatc 37476335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 297
Target Start/End: Original strand, 37466497 - 37466526
Alignment:
Q  268 ttatcaaccttaacgaaatcagcatcccaa 297  Q
    ||||||||||||||||||||||||||||||    
T  37466497 ttatcaaccttaacgaaatcagcatcccaa 37466526  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 88 - 182
Target Start/End: Complemental strand, 55118972 - 55118878
Alignment:
Q  88 ttgatgttcaagtaatttgcagcttgaatgagttcgaaaagcatagcctgatcaacatgcttcatgaattcagcgtcccaagccttaagatcatc 182  Q
    ||||||||||||||| |||||||| ||| ||| |||  |||  || |||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  55118972 ttgatgttcaagtaaattgcagctagaaggagatcgttaagggtatcctgatcaacctgcttcatgaattcagcgtcccaagccttgagatcatc 55118878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 52791814 - 52791851
Alignment:
Q  26 cttgcgaatctcctccggcgtcttccccttgatcatgt 63  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  52791814 cttgcaaatctcctccggcgtcttacccttgatcatgt 52791851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 11160892 - 11160852
Alignment:
Q  24 gtcttgcgaatctcctccggcgtcttccccttgatcatgtc 64  Q
    ||||| |||||||||||||||||| | ||||||||||||||    
T  11160892 gtcttacgaatctcctccggcgtcctacccttgatcatgtc 11160852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 8992608 - 8992555
Alignment:
Q  19 taaatgtcttgcgaatctcctccggcgtcttccccttgatcatgtccgccacag 72  Q
    |||| ||||||||||||||||| || |||||||||||||||||||| |||||||    
T  8992608 taaaggtcttgcgaatctcctcaggtgtcttccccttgatcatgtctgccacag 8992555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 45071640 - 45071811
Alignment:
Q  19 taaatgtcttgcgaatctcctccggcgtcttccccttgatcatgtccgccaca--------ggtaag---caacaggctcttgatgttcaagtaatttgc 107  Q
    |||| ||||| ||||| |||||||| |||||||| ||||||||||||||||||        ||||||   || || || |||||| | |||||| |||||    
T  45071640 taaaagtctttcgaatttcctccggtgtcttccctttgatcatgtccgccacaatctggcaggtaagatccagcaagcccttgatatccaagtagtttgc 45071739  T
Q  108 agcttgaatgagttcgaaaagcatagcctgatcaacatgcttcatgaattcagcgtcccaagccttaagatcatc 182  Q
    |||  ||||||| || |||||| |||||||||||||   ||||| ||||||||| ||||||  ||||||||||||    
T  45071740 agcaagaatgaggtcaaaaagcgtagcctgatcaac---cttcacgaattcagcatcccaattcttaagatcatc 45071811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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