View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9610_low_2 (Length: 829)

Name: NF9610_low_2
Description: NF9610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9610_low_2
NF9610_low_2
[»] chr7 (4 HSPs)
chr7 (192-815)||(23382871-23383498)
chr7 (38-200)||(23383879-23384041)
chr7 (704-813)||(23388791-23388901)
chr7 (690-763)||(23392603-23392676)
[»] chr4 (4 HSPs)
chr4 (692-753)||(22304480-22304541)
chr4 (678-762)||(22321820-22321904)
chr4 (678-762)||(22049951-22050035)
chr4 (697-755)||(12100651-12100709)
[»] chr1 (3 HSPs)
chr1 (693-762)||(31917029-31917098)
chr1 (691-762)||(31965121-31965192)
chr1 (693-769)||(31921162-31921239)
[»] scaffold0050 (1 HSPs)
scaffold0050 (697-769)||(33400-33472)
[»] chr2 (1 HSPs)
chr2 (693-762)||(33851551-33851620)
[»] chr3 (1 HSPs)
chr3 (682-757)||(14540319-14540394)
[»] chr6 (1 HSPs)
chr6 (691-744)||(28912937-28912990)


Alignment Details
Target: chr7 (Bit Score: 445; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 192 - 815
Target Start/End: Complemental strand, 23383498 - 23382871
Alignment:
Q  192 ataatcatattggttgagtagaaattttacaattcttatggtgacaaacttataaattatactacacaataacaatttagtacaatttctagatcgataa 291  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||    
T  23383498 ataatcatattggctgagtagaaattttacaattcttatgatgacaaacttataaattatactacacaataacgatttagtacaattgctatatcgataa 23383399  T
Q  292 tcaatacactaacaatatagtgacaggcttctctannnnnnnn-aatgatagttgagaatcctaactcataaacatggtaatgtttaaaagatattattt 390  Q
    |||||||||||||| |||||||| |||||||||||         ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23383398 tcaatacactaacactatagtgataggcttctctatttttttttaataatagttgagaatcctaactcataaacatggtaatgtttaaaagatattattt 23383299  T
Q  391 actaaatttgaaatggtaagaaaataaacattttgtcataaattttatgaaatataagtatattaagaaaataaaattcaagatactgaactctaacaat 490  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||    
T  23383298 actaaatttgaaatggtaagaaaataaacattttgtcataaattttatgaaacataagtatattaagaaaataaacttcaaggtactgaactctaacaat 23383199  T
Q  491 atgtttattgctatctaatgcgtacacaaatattattaatgcatctaaaagttacaaagaaaaccgcctctggacaatcatcgttagtaaaacaagaatt 590  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  23383198 atgtttattgctatctaatgcgtacacaaatatttttaatgcatctaaaagttacaaagaaaaccgcctctggacaatcatcgttagtaacacaagaatt 23383099  T
Q  591 ttctgcattttc-nnnnnnnnnnnnnggaattatacaatt--gtaacataatattgtgtaaaagataaatttgaaaagggtgtnnnnnnngacataccag 687  Q
    ||||||||||||              ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||       ||||||||||    
T  23383098 ttctgcattttcaaaaaagaaaaaaaggaattatacaattacgtaacataatattgtgtaaaagataaatttgaaaagggtgtaaaaaatgacataccag 23382999  T
Q  688 gattggttacaacaagaaatagagaaacaaaaatgatgaaatcataaacaaacatgataatttgagtcatgttttcctccttcacatgtgattaatagaa 787  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23382998 gattggttacaacaagaaatagagaaacaaagatgatgaaatcataaactgacatgataatttgagtcatgttttcctccttcacatgtgattaatagaa 23382899  T
Q  788 gtttttgatctctttataagtaaaatat 815  Q
    |||||| |||||||||||| ||||||||    
T  23382898 gttttttatctctttataaataaaatat 23382871  T

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Target: chr7; HSP #2
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 38 - 200
Target Start/End: Complemental strand, 23384041 - 23383879
Alignment:
Q  38 aactaagtaaacaattgtaggcgttggatccggttactaagttgcaaaagagaaggaagtcaaacatgacctaatctctcttttaattgtttttacttcg 137  Q
    |||||||||||||||||||||| ||||| ||| |||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  23384041 aactaagtaaacaattgtaggccttggacccgattaccaagttgccaaagagaaggaagtcaaacatgacctaatctcccttttaattgtttttacttcg 23383942  T
Q  138 ttaaagtgaaccaatcattgttaagtgcaaccccccaattaaaacatccgaattataatcata 200  Q
    |||||||||||||||||||| ||||||||||| | ||||||||||||| ||||||||||||||    
T  23383941 ttaaagtgaaccaatcattgctaagtgcaaccgcacaattaaaacatctgaattataatcata 23383879  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 704 - 813
Target Start/End: Complemental strand, 23388901 - 23388791
Alignment:
Q  704 aaatagagaaacaaaaatgatgaaatcataaacaaacatgataatttgagtcatgttttcctccttcacatgtgattaatagaa-gtttttgatctcttt 802  Q
    ||||||||||| ||  ||||||||| |||||||||| |||| |||||||| ||| |||||||  ||  | ||| ||||||||||  || |||||| ||||    
T  23388901 aaatagagaaaaaaggatgatgaaagcataaacaaaaatgagaatttgagccatattttccttttttgcttgtaattaatagaatcttattgatcgcttt 23388802  T
Q  803 ataagtaaaat 813  Q
    |||| ||||||    
T  23388801 ataattaaaat 23388791  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 690 - 763
Target Start/End: Complemental strand, 23392676 - 23392603
Alignment:
Q  690 ttggttacaacaagaaatagagaaacaaaaatgatgaaatcataaacaaacatgataatttgagtcatgttttc 763  Q
    |||||| |||||||||||||||||| ||| ||||| |||   |||| |||| ||| |||||||||||| |||||    
T  23392676 ttggtttcaacaagaaatagagaaagaaagatgattaaagtgtaaataaacttgagaatttgagtcatattttc 23392603  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 692 - 753
Target Start/End: Complemental strand, 22304541 - 22304480
Alignment:
Q  692 ggttacaacaagaaatagagaaacaaaaatgatgaaatcataaacaaacatgataatttgag 753  Q
    |||||||||||||| |||||||| ||||| ||| |||||||||||||||||||||| |||||    
T  22304541 ggttacaacaagaattagagaaataaaaaggatcaaatcataaacaaacatgataacttgag 22304480  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 678 - 762
Target Start/End: Complemental strand, 22321904 - 22321820
Alignment:
Q  678 gacataccaggattggttacaacaagaaatagagaaacaaaaatgatgaaatcataaacaaacatgataatttgagtcatgtttt 762  Q
    |||||||||  |||||||||||||||||||| ||||| | | ||||||||| ||||| |||||| || |||||||| ||| ||||    
T  22321904 gacataccaccattggttacaacaagaaataaagaaatagagatgatgaaaacataagcaaacaagagaatttgagccatatttt 22321820  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 678 - 762
Target Start/End: Original strand, 22049951 - 22050035
Alignment:
Q  678 gacataccaggattggttacaacaagaaatagagaaacaaaaatgatgaaatcataaacaaacatgataatttgagtcatgtttt 762  Q
    |||||||||  ||||||||||| || |||||  |||| ||| ||||| |||||||||| |||||||| |||||||| ||| ||||    
T  22049951 gacataccaccattggttacaataataaatatggaaagaaagatgatcaaatcataaataaacatgagaatttgagccatatttt 22050035  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 697 - 755
Target Start/End: Original strand, 12100651 - 12100709
Alignment:
Q  697 caacaagaaatagagaaacaaaaatgatgaaatcataaacaaacatgataatttgagtc 755  Q
    |||||||||||||| ||| |||  |||| ||| |||||| |||||||||||||||||||    
T  12100651 caacaagaaatagaaaaagaaaggtgatcaaagcataaagaaacatgataatttgagtc 12100709  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 693 - 762
Target Start/End: Complemental strand, 31917098 - 31917029
Alignment:
Q  693 gttacaacaagaaatagagaaacaaaaatgatgaaatcataaacaaacatgataatttgagtcatgtttt 762  Q
    |||||||||||||||||||||| ||| ||||| ||| |||||||||| |||| ||||||| |||| ||||    
T  31917098 gttacaacaagaaatagagaaataaagatgatcaaagcataaacaaatatgagaatttgaatcatatttt 31917029  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 691 - 762
Target Start/End: Complemental strand, 31965192 - 31965121
Alignment:
Q  691 tggttacaacaagaaatagagaaacaaaaatgatgaaatcataaacaaacatgataatttgagtcatgtttt 762  Q
    |||||||||||| | ||||||||| |||||| ||||||  ||||||||||| || |||||| ||||| ||||    
T  31965192 tggttacaacaaaagatagagaaagaaaaataatgaaaaaataaacaaacaggagaatttgtgtcatatttt 31965121  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 769
Target Start/End: Complemental strand, 31921239 - 31921162
Alignment:
Q  693 gttacaacaagaaatagagaaacaaaaatgatgaaatcataaacaaacatgataatttgagtcatgttt-tcctcctt 769  Q
    |||||||||||||||||||||||||  ||||  ||| |||||| ||| |||| | |||||||||| ||| ||||||||    
T  31921239 gttacaacaagaaatagagaaacaacgatgaataaagcataaataaatatgagagtttgagtcatatttgtcctcctt 31921162  T

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Target: scaffold0050 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 697 - 769
Target Start/End: Complemental strand, 33472 - 33400
Alignment:
Q  697 caacaagaaatagagaaacaaaaatgatgaaatcataaacaaacatgataatttgagtcatgttttcctcctt 769  Q
    ||||| |||||||||||| ||| ||||| ||| ||||| ||||||||| |||||||| |||||||||| ||||    
T  33472 caacatgaaatagagaaagaaagatgatcaaaacataagcaaacatgaaaatttgagacatgttttccccctt 33400  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 693 - 762
Target Start/End: Complemental strand, 33851620 - 33851551
Alignment:
Q  693 gttacaacaagaaatagagaaacaaaaatgatgaaatcataaacaaacatgataatttgagtcatgtttt 762  Q
    |||||||||||||||||||||| ||| ||||| ||| ||||||  ||||||| |||||||| ||| ||||    
T  33851620 gttacaacaagaaatagagaaagaaagatgatcaaaacataaatgaacatgagaatttgagccatatttt 33851551  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 682 - 757
Target Start/End: Complemental strand, 14540394 - 14540319
Alignment:
Q  682 taccaggattggttacaacaagaaatagagaaacaaaaatgatgaaatcataaacaaacatgataatttgagtcat 757  Q
    |||||| |||||||||||||||||||| ||||| ||| || || ||| ||||||||||| | | ||||||| ||||    
T  14540394 taccagcattggttacaacaagaaataaagaaaaaaagattatcaaagcataaacaaacttaaaaatttgattcat 14540319  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 691 - 744
Target Start/End: Complemental strand, 28912990 - 28912937
Alignment:
Q  691 tggttacaacaagaaatagagaaacaaaaatgatgaaatcataaacaaacatga 744  Q
    ||||||||| ||||||| |||||| ||| ||||| ||| |||||||||||||||    
T  28912990 tggttacaataagaaattgagaaagaaagatgatcaaaacataaacaaacatga 28912937  T

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